CaUC02G027620 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G027620
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ubiquitin-like domain-containing protein
Location	Ciama_Chr02: 1930364 .. 1930675 (-)
RNA-Seq Expression	CaUC02G027620
Synteny	CaUC02G027620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATGTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

mRNA sequence

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATGTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

Coding sequence (CDS)

ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATGTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG

Protein sequence

MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF

Homology

[Close]

BLAST of CaUC02G027620 vs. NCBI nr
Match: XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVD G+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103

[Close]

BLAST of CaUC02G027620 vs. NCBI nr
Match: KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.5e-36
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
           DGISLVD G+RDGSHIYIFF PL D+DGDD+EAR+ FFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of CaUC02G027620 vs. NCBI nr
Match: KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 9.3e-36
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVD G+RDGS IY+FFCPLDD   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of CaUC02G027620 vs. NCBI nr
Match: XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 2.7e-35
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVD G+RDGS IY+FFCPLD+   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of CaUC02G027620 vs. NCBI nr
Match: XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 6.1e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
           MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN  LPSDRLIFI D N  R I   DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDVGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
           G SLVD GV+DGSHIYIFF PLD     D+ GDD +    +R  FFTC ++LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match: A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDGI
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60

Query: 61  SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVD G+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103

[Close]

BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match: A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
           MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH   HNLPS RLIFIPDHN +RLI   D
Sbjct: 1   MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60

Query: 61  DGISLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
           DGISLVD G+RDGSHIYIFF PL D+DGDD+EAR+ FFT   DLLLF
Sbjct: 61  DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107

[Close]

BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match: A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
           MKLV +NLTGSLFYVEV+D ATV DLRT+I++  +LPSDRL+F+PDH+R RLI   DDG 
Sbjct: 1   MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60

Query: 61  SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
           SLVD G+RDGS IY+FFCPLD+   DDL+ARQLFF CPDLLLF
Sbjct: 61  SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103

[Close]

BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match: A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
           MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN  LPSDRLIFI D N  R I   DD
Sbjct: 1   MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60

Query: 61  GISLVDVGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
           G SLVD GV+DGSHIYIFF PLD     D+ GDD +    +R  FFTC ++LLF
Sbjct: 61  GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114

[Close]

BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match: A0A2N9FN61 (Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16475 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.5e-20
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
          M++VV+NLTG+LFY+E+ +DAT+ DL+ +I    NLPSDRLI I D NR   + D  DG+
Sbjct: 5  MRVVVENLTGTLFYIELGNDATLADLKKEIEDQQNLPSDRLILILDTNRSHRMNDDGDGV 64

Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDL 89
          SLVD GV+DGSHIY+FF PLDD    D+
Sbjct: 65 SLVDCGVKDGSHIYLFFNPLDDGSTHDV 92

[Close]

BLAST of CaUC02G027620 vs. TAIR 10
Match: AT2G32360.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 1  MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
          MK+ V+ +TG+    +V +DATV  ++ +I     LP  RLI  I D    RL+ + +D 
Sbjct: 1  MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60

Query: 61 ISLVDVGVRDGSHIYIFF 78
          + L D+GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78

The following BLAST results are available for this feature:

BLAST of CaUC02G027620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989504.1	3.8e-37	74.76	uncharacterized protein LOC111486561 [Cucurbita maxima]	[more]
KGN43536.1	2.5e-36	78.50	hypothetical protein Csa_020453 [Cucumis sativus]	[more]
KAG6589175.1	9.3e-36	72.82	hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930696.1	2.7e-35	71.84	uncharacterized protein LOC111437093 [Cucurbita moschata]	[more]
XP_022136124.1	6.1e-27	61.40	uncharacterized protein LOC111007894 [Momordica charantia]	[more]

BLAST of CaUC02G027620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G027620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPI4	1.8e-37	74.76	uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561...	[more]
A0A0A0K6V6	1.2e-36	78.50	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044...	[more]
A0A6J1ERN4	1.3e-35	71.84	uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1C3E5	2.9e-27	61.40	uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A2N9FN61	3.5e-20	57.95	Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU...	[more]

BLAST of CaUC02G027620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32360.1	2.7e-09	39.74	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 1..77 e-value: 6.3E-9 score: 37.5
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..76 e-value: 4.30386E-8 score: 44.1242
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 10.113883
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G027620.1	CaUC02G027620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding