CSPI07G12930 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI07G12930
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr7: 11373182 .. 11377558 (-)
RNA-Seq Expression	CSPI07G12930
Synteny	CSPI07G12930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGTTCGAAGGACGCAGGTCAGCGGTTGGAAGCGTCAAGGGAACGACATGAAGGGATTCCATTTTGAAGGGATGTGTATCAGAATGAAGCATCAGACGACAAGATTCCGTTTTTGTTTTTGCAGGACAACATGGAGGGATCTTGTTTTTGTCAAGAAGGGATGCGTATCTTAATGAAGCATCACACAACAGTCGGGGCAGGCAGAAGAGTTAGGGATGACGGTCATACAGAACGGAGGACAGCGGTGAGAATCTCCTTTTTGCTTTCGAAGGGCGGTGTGAAGGATTTGGTTTTCATGAAGAAGGGATGAGTGTGAAGCGTCTACGGCTACCATCTGGCATTTTCGAAGCGATACCATCTGCACTTGAAGTTTAATTGTTTAATATTACTCGATGCTTTCACGAAAAGTATCTCACTTGAAGTTTAAAAGACATCAATAAATTTAAAAAATGACCTTTCCTACCACATTTCATAAAAATTCTTGATGTTTTAAAATATAAAAAATTTAATAGTTCTTACTAGATATTCTTAAAACGTCAAAGAAAAGTACATATCACTTAATGTTTAAAAGCTGTCAAGAAAGTCAAATTTATAATTATTCTTGATGTTTTAAAAACCTCATGAATTTAATAGATATTACTTTACATTTTTAAAACATAAAAAAAAGATGCATATTACTTGACGTTTAAAAACCATCAAGAAAGCTAAAAAAGGTCTACCTCCTTATTTTCATAAAAATTCTTGACGTTTTATCTTTGATATCACCCATTTTTTGACGTCTTTTTCGAAAAACATCAAATAATTAAAACCACAAACGTCAAGAAAGTTCCTTTTTCTAGTAGTGACATCATCCTTGTGTACGAAAGTTGGTGATTGATTTAACTTTGTCTCCAATCAAAATTCAGGATAAGGAAGTAACAGTGGCACATGGCGTTCTGACATTAGACCATTCTCACCACCGATCGAGCAAAATAATCATTATGGCATAGGAGACTACATCAAAGAGACTTATAAACATGTGAAGGTCTGTAATTTTGAAGCTGCTTTTACCTTAAGCTTACTTAAGAAAGAATTGAGAGAGTTACTACTTCTCGATGAAGGAAGCTCATATCCCATAGCAATTCATCGCATAGCTTAGAATATAAAATGCAAGCTACTTTGAAATTTCTTCAGTCGTATAACGGTCTCATCGTATAGGCCAATCTTGCCTCGTGAATCTTATCGCTTAAGGCAAAACATGATTAGGGCCTCAAATTAATCTCAAAGAAGCAAAAGGTTAGATAGGCTTATGATTTATGGTCTATAACAAAAACCTTTGTTCTATTGTTCTAGGGAAAACCATATTAAGTTTCTTATTAGGTTTTTCTTATTAGAAATTTATCTAGCGCAATTTTTTAAAGGGTAATGTGGTTAGTTAAATTGATTAGGATGTTATTTTTTATCTAATTAAATTGGCTAATTTGACATTTAGGATTATTCGTCACCGTGACATTTAGGACCACGATGGTGGGTTCGACAACGACTAGGCACAAGATGAACACGAAGGATCTTCTTCTAGTGGTGGTGGTAGTTGTTCAGAGAAGAAAGGAAAGAAAATGAGATAGAGATGGAGAATGTAGGAAAGAAATTGACAAACAGAGGAGAAAAATCGTGTGGCTTGAGAAAATAGTAAAATAAGAGAGATAAATACTTAACTTTGTACAAAAAAAACAATTAAACATAGCTTTAATATCGCTTTTCAAAAGGAGGATGTTTAATGTCAGTTTTAAACTGACATTAAAGCTCCCTCTTTAATATCGATTTAAAACCGACATAAACATCCGTCATTTGAGAAGCGACATTAAAGCTCCGTTTTCATTTTCCAACCCAACAATAAAAGCCAGATTTCTTCTAGTGAATCAATTGGGCTAGACACAAGTAAGAAGTTATAAATCATAGTTTGATAATTTGATGATCATAATTACAATGGACAAATTTCATTCTTCCAAGCTAGAACGTTATTATTTGATTGCTTTTCTATAATTTACTTAAGCGTCTTTACTTTTATGCACATATGAATCTCAAACCACAAACCCCATCTTTTATCACTTAATTAAATAATTAGCTTTGAGAAACTAATATTTCGTGCTTCTCTATGGATCGATCCAATCTTGCCACTTGTACTACTTAGTATTAAAGGTAATATTGATTGGTATCACTACAAGAAAAACTGTCTACTATGACAGTTGTGTATACCACAAAATGGGGGGAGAAAAAAAAACTGACACAAAATGTAAAATTTCGCGTTTTGGGCGAAAAAAACGGAACTTTTCGGATAAAACATTTTACGACAGTTATTTGATGTCATAGAAAAAAACATAAAATATTTTTTTATTTTTTATTAAAAATAGTAAATAAAGATTAGAAATTTAGAAAATATTTCCCCAAATCGTAAACCCTTATTATTTTTCCCAATTCTCCCACAAAGTATCCATCTCCAATCTGACCGTCTTTCATCTCCAATCTGACCGTCTTCCGACCCTGTCACCATCTGCCACTACTCGTGGCCATCTGTTCACTCCGACATGGCCGTCTATTCACTCTGACGTGCTCATCTGTTCACTCTAGCGCTGCCATTAACGAACGACGAAACCCCTGCAATCCTCTGCAATCTTCAAACCTTTTCAATTCGTTCTCGTCTTCTCCAGTGTTGTCGTTCGTGCCCGTCGTCTCCGGCGCTGCCATTTGTGCCCGTCGTCACCTCCTCTACCGGTAAGCTTCTATTCTTTCTCTCTTTGTCTCTCTCTCTTTGTGACGGTTTGATTCTGTGTTGATAGTGTACATTGAAATTTAATTTTATTTATCGAAAGTCCCCTTGACTGACTCCAATTTCCAATATGGTTGACCCAATCTTATTTCTATTTCAAATCTTGATCTACCCTTTATCCCCAGACCCCAGCTTTTGTTCAATTTCAAATCCATACACACACACACCCAAGTTTCATTTGTTCATGGATGGAGGATGTATTAAATATTATTACAATAACCAACATATCTAGTAGTAGTACTAGTGCTATGTGGAGTTAACATTCAAATCATTGGAAGTTATTAGAAACTAATTATGCCAAGTTTATATATTATTGTAGGATAGATTTGATTTTGAATATAATGAAATGGAATGAGTTGTTGCAATATATTATGGGAGCTTTGCAGATAAAACAACATACTGGATTTTTATAGGAAATACTGCACACCTACAGTTGGATATTCATTACTTATTTTTAGAAAATGGGTATTGTTTAATTGAAAGAACATTTTAAATCCAATAGAATAGAAGAAGTTTAAGATATCAAATCTTGGTTTGGTTTAAGTATGAATAAGAAAGAGAGAGTATTATTTAATTGAAAATGGAAACTAGAATGAGAGAGATTTTAGGGAAAAGTTGTTTTGTTCTAGACACACAAATATGTATGGAAACTCCTAAGTCCTAACATATATGTATACATATATACAGTAAATTCCCAACTTAAAAGTGGGATGTTTAAGCATATAAATGAAGAGAATACTTTTAAAGCTTCAAGCTTCACTAAATTCTCAACTTAAAGGTTTTGTGATATTAAGGATTTGATTGTAAAAAATCCACTGTTATCCAAATTCCAGCTCTAAATGTCCTCCCTTAGTGTGAGGAAGAATGAGAATAGGGATAAGTTGATGGATGGAGACCTATTCAGAAATTTCATCTTCAAGGTTGCTTCTAAAGTTCAGCACCCAAGACGTGTCAATCAAATATTTTTGGAATTTTAGATGGAAGTTATATGCTTGTTTTATCTCGACCTTATGGCATTTACATATCCTAATAATTGAAATCTCTTGTTTCCCACAATAAATAGTTGTGATTTATATTATTTTTGTTTTGTTTTCTTGCTAGCTAAACTGATTCATACTCTTTATAATGAAGATCTCATTTGATGGCACCTTGTTCATTCTCTGTTTGCCTACTTTTGGCTCTTCTGTTTTTTTTTCTTCTTCTTTTATTGAACATTATACTCTAGACTTACCATTTTATGCATTGAAAACATGAGTCTAGGATTCCTTTTCATAGGTGAAGTTCGAACTTGCTGCTTATGAGAAGTTAGTATTTGGAAAATTAGAGGTTTGTTCCTCATTTATCATTGTGATGTAAAATTGATTTTACCTTCCTTCGTTTTTTTCTTTTCTTTTTTTTACTTGAATATTTAACTGTTTTGAATTTTTTCTGCAGATGGTATTCTTGTTGTTACATCACATCCACTTATCAGTCCTATTTTGTTCAATCCGGCTGTGGCCGTAATCTCCAATCTGTCGCATTCTCTTGAACATTCAATTTGCATCTGTGACCTCCTCTACTGGTAA

mRNA sequence

ATGGGTTTGTTCGAAGGACGCAGGTCAGCGGACAACATGGAGGGATCTTGTTTTTGTCAAGAAGGGATGCGTATCTTAATGAAGCATCACACAACAGTCGGGGCAGGCAGAAGAGTTAGGGATGACGGTCATACAGAACGGAGGACAGCGGTGAGAATCTCCTTTTTGCTTTCGAAGGGCGGATTATTCGTCACCGTGACATTTAGGACCACGATGGTGGGTTCGACAACGACTAGGCACAAGATGAACACGAAGGATCTTCTTCTAGTGGTGGTGTGTTGTCGTTCGTGCCCGTCGTCTCCGGCGCTGCCATTTGTGCCCGTCGTCACCTCCTCTACCGATGGTATTCTTGTTGTTACATCACATCCACTTATCAGTCCTATTTTGTTCAATCCGGCTGTGGCCGTAATCTCCAATCTGTCGCATTCTCTTGAACATTCAATTTGCATCTGTGACCTCCTCTACTGGTAA

Coding sequence (CDS)

ATGGGTTTGTTCGAAGGACGCAGGTCAGCGGACAACATGGAGGGATCTTGTTTTTGTCAAGAAGGGATGCGTATCTTAATGAAGCATCACACAACAGTCGGGGCAGGCAGAAGAGTTAGGGATGACGGTCATACAGAACGGAGGACAGCGGTGAGAATCTCCTTTTTGCTTTCGAAGGGCGGATTATTCGTCACCGTGACATTTAGGACCACGATGGTGGGTTCGACAACGACTAGGCACAAGATGAACACGAAGGATCTTCTTCTAGTGGTGGTGTGTTGTCGTTCGTGCCCGTCGTCTCCGGCGCTGCCATTTGTGCCCGTCGTCACCTCCTCTACCGATGGTATTCTTGTTGTTACATCACATCCACTTATCAGTCCTATTTTGTTCAATCCGGCTGTGGCCGTAATCTCCAATCTGTCGCATTCTCTTGAACATTCAATTTGCATCTGTGACCTCCTCTACTGGTAA

Protein sequence

MGLFEGRRSADNMEGSCFCQEGMRILMKHHTTVGAGRRVRDDGHTERRTAVRISFLLSKGGLFVTVTFRTTMVGSTTTRHKMNTKDLLLVVVCCRSCPSSPALPFVPVVTSSTDGILVVTSHPLISPILFNPAVAVISNLSHSLEHSICICDLLYW*

Homology

[Close]

BLAST of CSPI07G12930 vs. NCBI nr
Match: KAE8650532.1 (hypothetical protein Csa_011082, partial [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 114 DGILVVTSHPLISPILFNPAVAVISNLSHSLEHSICICDLLY 156
           DGILVV SH LISPI FNP VAVISNLSHSLE+SICICDLLY
Sbjct: 18  DGILVVASHLLISPIQFNPVVAVISNLSHSLEYSICICDLLY 59

The following BLAST results are available for this feature:

BLAST of CSPI07G12930 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G12930 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI07G12930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650532.1	1.3e-09	88.10	hypothetical protein Csa_011082, partial [Cucumis sativus]	[more]

BLAST of CSPI07G12930 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI07G12930.1	CSPI07G12930.1	mRNA