CSPI07G12730 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G12730
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUBN2_3 domain-containing protein
LocationChr7: 11014564 .. 11015906 (-)
RNA-Seq ExpressionCSPI07G12730
SyntenyCSPI07G12730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGAATTAAAACTACAGTTGAAAAAGAAATATTGGAGCACATTAGTATTATGGAGACACCAAAGAAAGCATGGGACACATTTGCCTCACTTTTCTCAAAGAAGAATGATGCAAGATTGCAGGTTTTAGAAAACGAGCTCCTGTTAATCGCTCAAAGGGAGATGACTATCAACCATTTCACTAAGGTAAGAACTCTATGCCATGAAATCTCTAAATTAGATCCTACTTAAGCTATTTCAGAATTGAGAATGAGAAGAAATATTATTCATGGTCTTAAACCAGAATATATAAGTTTTATTGATGCTATTGAGGTTGGGCAATCCGACCTTCTTTGATTGACCCAGAAAATATGTTTGTCAGTCAAGAAGCATTGGATAAGCAAATGTCAGAGGTCACAATAAAGAGCAATGAGCAACAATGAAGAAGCGCTCTTTAGTTGCTAAAGAAAAGGTCATTCAAAATTTTAAAAGAAAGTAGGTTGAAAGGGAGATGAAGAGACTCCAAAATGCCCTCAAGTAAGGGGAGCTAACAAAAATGATCGTGAACACGGCCATAGAAAGAAGGGCAAATGCTACAATTATGGAAGGATAGGTCACTATACCAGAGAATGTCGCCAAAAAAAGATGACAGCAGAAAGCAACACAGTCACCTCCTAGGTTGAGAGCATTAGTGGTGAAGAATGGGATGCAGATCCATACTATGCAACAACAGATCCCGACCCCCAATCGGTATCCAATGTGATGGAGAATAAAGTGTTGGCTCTCCATGTAGACGAGGTAAATTATGAAAATGATTGGATTGATGATTCAGAATGTTGTAATCATATGACAAGAGATAAGCAGAAGCTATAAAACACAACAAAGTACAAAGGAAGCCAAGTTGTTGTAACTGCAAACAACTCGAAGTTGCCAATACCCACATTGGCAAAACTCTCATAATGCCTCATTCGAATTCCAATCAAGTAGAACTGGAAAGCATGCGTTATGTGCCTTAATGCAGAAAAATTTGTGCCAATATCTCAATTGACATCAGCAGGCAAATTTTTCGTGTTTGGACCAAATGGTGTTAAGGTTTACCAAGATTTGGAAGCCAGTGGCAAGCTATTGATGGAAAGACAAGAAATGGATTCCATCTATATCATGTTAGCAGAAGACGCCTACATGGATAGGCAAAGGCATTTAGTGACAGAGTGCATTGATTCCATTGATGAACAATGTCATACAATTAATGAAGCATTATCATGAGAGGTCTTTTGAGGAAGGATCCAAAGATGAGATAAGTCGAGTATAACATGATCCAACAGAAGGTGAAGAAGAAAACGACAAAGACGAAAAACAAT

mRNA sequence

ATGTTTGGAATTAAAACTACAGTTGAAAAAGAAATATTGGAGCACATTAGTATTATGGAGACACCAAAGAAAGCATGGGACACATTTGCCTCACTTTTCTCAAAGAAGAATGATGCAAGATTGCAGGTTTTAGAAAACGAGCTCCTGTTAATCGCTCAAAGGGAGATGACTATCAACCATTTCACTAAGGTTGAGAGCATTAGTGGTGAAGAATGGGATGCAGATCCATACTATGCAACAACAGATCCCGACCCCCAATCGGTATCCAATGTGATGGAGAATAAAGTGTTGGCTCTCCATGTAGACGAGAACTGGAAAGCATGCGTTATGTGCCTTAATGCAGAAAAATTTGTGCCAATATCTCAATTGACATCAGCAGGCAAATTTTTCGTGTTTGGACCAAATGGTGTTAAGGTTTACCAAGATTTGGAAGCCAGTGGCAAGCTATTGATGGAAAGACAAGAAATGGATTCCATCTATATCATGTTAGCAGAAGACGCCTACATGGATAGGCAAAGGCATTTAGTGACAGAGTGCATTGATTCCATTGATGAACAATGTCATACAATTAATGAAGCATTATCATGAGAGGTCTTTTGAGGAAGGATCCAAAGATGAGATAAGTCGAGTATAACATGATCCAACAGAAGGTGAAGAAGAAAACGACAAAGACGAAAAACAAT

Coding sequence (CDS)

ATGTTTGGAATTAAAACTACAGTTGAAAAAGAAATATTGGAGCACATTAGTATTATGGAGACACCAAAGAAAGCATGGGACACATTTGCCTCACTTTTCTCAAAGAAGAATGATGCAAGATTGCAGGTTTTAGAAAACGAGCTCCTGTTAATCGCTCAAAGGGAGATGACTATCAACCATTTCACTAAGGTTGAGAGCATTAGTGGTGAAGAATGGGATGCAGATCCATACTATGCAACAACAGATCCCGACCCCCAATCGGTATCCAATGTGATGGAGAATAAAGTGTTGGCTCTCCATGTAGACGAGAACTGGAAAGCATGCGTTATGTGCCTTAATGCAGAAAAATTTGTGCCAATATCTCAATTGACATCAGCAGGCAAATTTTTCGTGTTTGGACCAAATGGTGTTAAGGTTTACCAAGATTTGGAAGCCAGTGGCAAGCTATTGATGGAAAGACAAGAAATGGATTCCATCTATATCATGTTAGCAGAAGACGCCTACATGGATAGGCAAAGGCATTTAGTGACAGAGTGCATTGATTCCATTGATGAACAATGTCATACAATTAATGAAGCATTATCATGA

Protein sequence

MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTINHFTKVESISGEEWDADPYYATTDPDPQSVSNVMENKVLALHVDENWKACVMCLNAEKFVPISQLTSAGKFFVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYMDRQRHLVTECIDSIDEQCHTINEALS*
Homology
BLAST of CSPI07G12730 vs. ExPASy TrEMBL
Match: A0A0A0K4U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-38
Identity = 83/86 (96.51%), Postives = 83/86 (96.51%), Query Frame = 0

Query: 110 MCLNAEKFVPISQLTSAGKFFVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYM 169
           MCLNAEKFVPISQLTSAGKF VFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYM
Sbjct: 1   MCLNAEKFVPISQLTSAGKFVVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYM 60

Query: 170 DRQRHLVTECIDSIDEQCHTINEALS 196
           D QRHLVTECIDS DEQCHTINEALS
Sbjct: 61  DMQRHLVTECIDSTDEQCHTINEALS 86

BLAST of CSPI07G12730 vs. ExPASy TrEMBL
Match: A0A5A7TNQ2 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00830 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 97/175 (55.43%), Postives = 109/175 (62.29%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN- 60
           MF IKTT++KE+LEHISIMETPKKAWDTFASLFSKKNDARLQ LENELL I QREMTIN 
Sbjct: 65  MFTIKTTIDKEMLEHISIMETPKKAWDTFASLFSKKNDARLQFLENELLSITQREMTINQ 124

Query: 61  HFTKVESISGEEWDADPYYATTDPDPQSVSNVMENKVLALHVDENWKACVMCLNAEK-FV 120
           +FTK+            Y+                               MC   +K  V
Sbjct: 125 YFTKI-----------MYF-------------------------------MCPRMKKNLV 184

Query: 121 PISQLTSAGKFFVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYMDRQR 174
           PISQLTSAG F VFGP  VKVY +L+ SG  LME Q MDSIY+MLAE  YM++ R
Sbjct: 185 PISQLTSAGNFVVFGPKDVKVYHNLKVSGTPLMEGQMMDSIYVMLAETTYMNKTR 197

BLAST of CSPI07G12730 vs. ExPASy TrEMBL
Match: A0A5A7T6Z1 (Glutamate receptor 2.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001370 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.6e-32
Identity = 100/240 (41.67%), Postives = 127/240 (52.92%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN- 60
           MF IKTT+ +E+LEHISIMETPKKAWDTF SLFSKKNDARLQ LE +LL I QREMTIN 
Sbjct: 66  MFAIKTTIGEEMLEHISIMETPKKAWDTFTSLFSKKNDARLQFLEKKLLTITQREMTINQ 125

Query: 61  HFTKVE--------SISGEEWDADPYYATT---------------DPDPQSVSNVMENKV 120
           +FTKV+         ++ +E  A+     T               DP+PQ  SNV+EN+V
Sbjct: 126 YFTKVQPSLIDLEIMLANQEALANQMSEVTIKSNNEEALFSGQRRDPNPQLTSNVVENEV 185

Query: 121 LALHVDE-------------------NWKACVMCLNAEKFVP------------------ 174
           LA H +E                   N K  +  +     VP                  
Sbjct: 186 LAFHAEERKLQNTIEYKRSRVVITANNLKLPIAHVGKTMIVPRSNSNQVELDNVFYVPRM 245

BLAST of CSPI07G12730 vs. ExPASy TrEMBL
Match: A0A2N9FTF3 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18390 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 88/209 (42.11%), Postives = 121/209 (57.89%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTI-N 60
           MF IKT++E+E+LEHI   +TPK AWDTFA+LFSKKN+ RLQ+LENEL+ IAQR MTI  
Sbjct: 205 MFAIKTSIEEEMLEHIRRTDTPKVAWDTFATLFSKKNNVRLQLLENELMSIAQRNMTITQ 264

Query: 61  HFTK-------------VESISGEEWDADPYYATTDPDPQ----SVSNVMENKVLALHV- 120
           +FTK              E  S EEWDA+  ++  +P  +    + S V E++ +AL V 
Sbjct: 265 YFTKENSSRKTRWHSQTKEGDSEEEWDAEASFSMIEPTEEEEMAATSIVEEDEEMALAVA 324

Query: 121 -------DENWKACVMCLN-----AEKF-----VPISQLTSAGKFFVFGPNGVKVYQDLE 174
                   E+W     C N      EK        ++QL  +G + +FGP  VKVY+++ 
Sbjct: 325 NPEQVNYREDWIVDSGCSNHMTGDKEKLQNMSKYKVAQLVDSGNWVLFGPKDVKVYKEIV 384

BLAST of CSPI07G12730 vs. ExPASy TrEMBL
Match: A0A5A7V002 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001020 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.3e-27
Identity = 77/154 (50.00%), Postives = 91/154 (59.09%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN- 60
           MF IKTT+++E+LEH+SI++TPKKAWDTFASLFSKKNDARLQ LEN+LL I QREMTIN 
Sbjct: 35  MFAIKTTIDEEMLEHVSIVKTPKKAWDTFASLFSKKNDARLQFLENKLLSITQREMTINQ 94

Query: 61  HFTK--------------------------------------------------VESISG 104
           +FTK                                                  VES S 
Sbjct: 95  YFTKGSQVREASKNNRPHGHRKKGECYNCGKISHYAKECCRKKKIAESNAVTSQVESSSK 154

BLAST of CSPI07G12730 vs. NCBI nr
Match: KAA0045163.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-35
Identity = 97/175 (55.43%), Postives = 109/175 (62.29%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN- 60
           MF IKTT++KE+LEHISIMETPKKAWDTFASLFSKKNDARLQ LENELL I QREMTIN 
Sbjct: 65  MFTIKTTIDKEMLEHISIMETPKKAWDTFASLFSKKNDARLQFLENELLSITQREMTINQ 124

Query: 61  HFTKVESISGEEWDADPYYATTDPDPQSVSNVMENKVLALHVDENWKACVMCLNAEK-FV 120
           +FTK+            Y+                               MC   +K  V
Sbjct: 125 YFTKI-----------MYF-------------------------------MCPRMKKNLV 184

Query: 121 PISQLTSAGKFFVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYMDRQR 174
           PISQLTSAG F VFGP  VKVY +L+ SG  LME Q MDSIY+MLAE  YM++ R
Sbjct: 185 PISQLTSAGNFVVFGPKDVKVYHNLKVSGTPLMEGQMMDSIYVMLAETTYMNKTR 197

BLAST of CSPI07G12730 vs. NCBI nr
Match: KAA0037956.1 (glutamate receptor 2.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-32
Identity = 100/240 (41.67%), Postives = 127/240 (52.92%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN- 60
           MF IKTT+ +E+LEHISIMETPKKAWDTF SLFSKKNDARLQ LE +LL I QREMTIN 
Sbjct: 66  MFAIKTTIGEEMLEHISIMETPKKAWDTFTSLFSKKNDARLQFLEKKLLTITQREMTINQ 125

Query: 61  HFTKVE--------SISGEEWDADPYYATT---------------DPDPQSVSNVMENKV 120
           +FTKV+         ++ +E  A+     T               DP+PQ  SNV+EN+V
Sbjct: 126 YFTKVQPSLIDLEIMLANQEALANQMSEVTIKSNNEEALFSGQRRDPNPQLTSNVVENEV 185

Query: 121 LALHVDE-------------------NWKACVMCLNAEKFVP------------------ 174
           LA H +E                   N K  +  +     VP                  
Sbjct: 186 LAFHAEERKLQNTIEYKRSRVVITANNLKLPIAHVGKTMIVPRSNSNQVELDNVFYVPRM 245

BLAST of CSPI07G12730 vs. NCBI nr
Match: KAA0059175.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 6.8e-27
Identity = 77/154 (50.00%), Postives = 91/154 (59.09%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN- 60
           MF IKTT+++E+LEH+SI++TPKKAWDTFASLFSKKNDARLQ LEN+LL I QREMTIN 
Sbjct: 35  MFAIKTTIDEEMLEHVSIVKTPKKAWDTFASLFSKKNDARLQFLENKLLSITQREMTINQ 94

Query: 61  HFTK--------------------------------------------------VESISG 104
           +FTK                                                  VES S 
Sbjct: 95  YFTKGSQVREASKNNRPHGHRKKGECYNCGKISHYAKECCRKKKIAESNAVTSQVESSSK 154

BLAST of CSPI07G12730 vs. NCBI nr
Match: KAA0037350.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 5.7e-26
Identity = 109/345 (31.59%), Postives = 134/345 (38.84%), Query Frame = 0

Query: 2   FGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTIN-H 61
           F IKTT+++E+LEHISIMETPKK WDTF SLFSKKNDARLQ LENELL I QRE TIN +
Sbjct: 65  FAIKTTIDEEMLEHISIMETPKKVWDTFTSLFSKKNDARLQFLENELLSITQREKTINQY 124

Query: 62  FTKV-------------------------------------------------------- 121
           FTKV                                                        
Sbjct: 125 FTKVKFLCCEISELDPTSAISESRMRRIIIHGLKSEYRSFIAAIQGWAVQPSLIDLESML 184

Query: 122 ----------------------------------------------------ESISGEEW 174
                                                               +SIS EE 
Sbjct: 185 ASQEALAKQISEVTIKSNNGEALFSGQRRGHYARECRCKKKIAESNAVTSQAKSISEEEG 244

BLAST of CSPI07G12730 vs. NCBI nr
Match: KAG6498151.1 (hypothetical protein ZIOFF_046060 [Zingiber officinale])

HSP 1 Score: 119.8 bits (299), Expect = 2.7e-23
Identity = 85/245 (34.69%), Postives = 117/245 (47.76%), Query Frame = 0

Query: 1   MFGIKTTVEKEILEHISIMETPKKAWDTFASLFSKKNDARLQVLENELLLIAQREMTI-N 60
           MF +K T+E+E+LEHI   +TPK+ WDTFA+LFSKKNDARLQ+LENELL I QR+ TI  
Sbjct: 41  MFALKITIEEEMLEHIRDAKTPKEVWDTFATLFSKKNDARLQLLENELLAIGQRDKTIAQ 100

Query: 61  HFTKVESISGEEWDADP-----------------------YYATTDPDPQSVSNVMENKV 120
           +F KV+SI  E  + DP                       + A     P   S +    +
Sbjct: 101 YFHKVKSICREISELDPEAPIGETRKKRIIIHGLKPEYRGFVAAIQGWPTQPSLLEFENL 160

Query: 121 LALHVDENWKACVMCLNAEK---------------------------------------- 180
           LA       +   + L  E+                                        
Sbjct: 161 LAGQEAMTKQMGEVSLKGEEEALYTNKSKGSFKRHASDGSKKDGDKVSLQDVYHVPGMKK 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4U22.4e-3896.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1[more]
A0A5A7TNQ26.6e-3655.43UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7T6Z12.6e-3241.67Glutamate receptor 2.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A2N9FTF32.1e-2942.11CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1839... [more]
A0A5A7V0023.3e-2750.00Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4... [more]
Match NameE-valueIdentityDescription
KAA0045163.11.4e-3555.43UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 d... [more]
KAA0037956.15.4e-3241.67glutamate receptor 2.8-like [Cucumis melo var. makuwa][more]
KAA0059175.16.8e-2750.00Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0037350.15.7e-2631.59Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, cata... [more]
KAG6498151.12.7e-2334.69hypothetical protein ZIOFF_046060 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G12730.1CSPI07G12730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding