CSPI07G11500 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI07G11500
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr7: 9743087 .. 9743433 (+)
RNA-Seq ExpressionCSPI07G11500
SyntenyCSPI07G11500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGACTAAGGGAACCTCACGCGAACAACCTAGATTCGTCGGAGACTCTTCACGTGGCTTGGTCAGATCAGAGAAAAACGTCGCAGACGAGGAAGGAGCTCCAGCACGGACTGGATGGAGAACACTCTACAATGTTTGGCTTGCTCAAATCGTGAACGACAGTCAGACATCAGCTCTTGCAGTGGCGAGGACATGGTAGATGGAGATGGTGAAGCGACGCTGGACGAAAGCACCCGGAGGGTTGGTGGTGAACGAAAAAATGGGCGGGGGCTAGGGTTTGACGAGGGAGAAGATGAAAAAGTAAGGTTGAAGATGATGAATAGTAAAACGCACGCTTCATGA

mRNA sequence

ATGGATCAGACTAAGGGAACCTCACGCGAACAACCTAGATTCGTCGGAGACTCTTCACGTGGCTTGGTCAGATCAGAGAAAAACGTCGCAGACGAGGAAGGAGCTCCAGCACGGACTGGATGGAGAACACTCTACAATTCAGACATCAGCTCTTGCAGTGGCGAGGACATGGTAGATGGAGATGGTGAAGCGACGCTGGACGAAAGCACCCGGAGGGTTGGTGGTGAACGAAAAAATGGGCGGGGGCTAGGGTTTGACGAGGGAGAAGATGAAAAAGTAAGGTTGAAGATGATGAATAGTAAAACGCACGCTTCATGA

Coding sequence (CDS)

ATGGATCAGACTAAGGGAACCTCACGCGAACAACCTAGATTCGTCGGAGACTCTTCACGTGGCTTGGTCAGATCAGAGAAAAACGTCGCAGACGAGGAAGGAGCTCCAGCACGGACTGGATGGAGAACACTCTACAATTCAGACATCAGCTCTTGCAGTGGCGAGGACATGGTAGATGGAGATGGTGAAGCGACGCTGGACGAAAGCACCCGGAGGGTTGGTGGTGAACGAAAAAATGGGCGGGGGCTAGGGTTTGACGAGGGAGAAGATGAAAAAGTAAGGTTGAAGATGATGAATAGTAAAACGCACGCTTCATGA

Protein sequence

MDQTKGTSREQPRFVGDSSRGLVRSEKNVADEEGAPARTGWRTLYNSDISSCSGEDMVDGDGEATLDESTRRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS*
Homology
[Close]
BLAST of CSPI07G11500 vs. ExPASy TrEMBL
Match: A0A0A0K4A6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259380 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 17  DSSRGLVRSEKNVADEEGAPARTGWRTLYN------SDISSCSGEDMVDGDGEATLDEST 76
           ++SRGLVRSEKNVADEEGAPARTGWRTLYN      SDISSCSGEDMVDGDGEATLDEST
Sbjct: 38  ETSRGLVRSEKNVADEEGAPARTGWRTLYNVWLAQISDISSCSGEDMVDGDGEATLDEST 97

Query: 77  RRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS 106
           RRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS
Sbjct: 98  RRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS 132

[Close]
BLAST of CSPI07G11500 vs. NCBI nr
Match: KGN44338.1 (hypothetical protein Csa_015525 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 17  DSSRGLVRSEKNVADEEGAPARTGWRTLYN------SDISSCSGEDMVDGDGEATLDEST 76
           ++SRGLVRSEKNVADEEGAPARTGWRTLYN      SDISSCSGEDMVDGDGEATLDEST
Sbjct: 38  ETSRGLVRSEKNVADEEGAPARTGWRTLYNVWLAQISDISSCSGEDMVDGDGEATLDEST 97

Query: 77  RRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS 106
           RRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS
Sbjct: 98  RRVGGERKNGRGLGFDEGEDEKVRLKMMNSKTHAS 132

The following BLAST results are available for this feature:
BLAST of CSPI07G11500 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI07G11500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4A65.9e-3991.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259380 PE=4 SV=1[more]
BLAST of CSPI07G11500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44338.11.2e-3891.58hypothetical protein Csa_015525 [Cucumis sativus][more]
BLAST of CSPI07G11500 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G11500.1CSPI07G11500.1mRNA