CSPI06G18620 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G18620
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L21
Location	Chr6: 16925751 .. 16931214 (-)
RNA-Seq Expression	CSPI06G18620
Synteny	CSPI06G18620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATATGGAGAATACCAATGAACAGGAGAGAGATAGAAGTAGTACTGAGGGTGAAGAGAGGCGACGACTTCGGCAAGAACAGAAGGGATGAGCGGCGGCAGCAATGCAAGCGGGAGACGGGCGGCGAGGCGTTTAGCGGTTGAAATGGAGGGAGCCGGCGTTCGGAGGTGAAGAGCAGTGAGAAGGGGTGAAGAAGGTGGAGGGGAAATTTTCGTTTTTTTTAGGAGAAGGTGTTAGGGAAATGGAAAATTGCCCCCCAAACCAAAAAACTTAGGAGAATTAGAGAGATGATATGAAAATTAACCCTAAAGTTTAAAAATCAATAAATTAAATTTTGGCATTGATGCTTTTATGAACATAGTAAAAAAAAAATACCACTTGTGATCTTAAATGCACTTCTTCCATATTCACTCTTCCCTGCACAATTATCTTTCTCGCCATTGATATTCCTGAGGGTCAAAGTCGGGACGAGTTACCACCGTAGATTATAAATCTGTTGGATGCTTTTGATTTTAATAAAATTATTTATTACTTAGTGATGAAATTTATGTTTCAGTACCTACCTCTTAAGTATGATTTTCATATATTTAGAATAGGTTTCGAACACTTGTTAGAGTTAAACTCAATTTAAAATGATTTGATATTTTTAGTTTGAATGAAAAATAATTTTGGTACGAGAAAAAAGAGTTTTGACCATTTCAAAATCATTTTTAAATACATCCTTTTTTTTAATCGATGTATTTTACCGATTCATTTTCCTTTCATATTCCATTTTTATGCAATGTGCCTTCTTCGTTCTTATTCGCCATATTTTTCTTGAATGATGAGCAAGAGAAAGAAAATAGAGTGAGACCAACGGAAAAATTATGATTAGCATGAACAAGGGAAAAAATTATGATTAGCATGAACAAGGGAAAAGGAGCGAGAAGTGTGTTTTAATTTTCTGTTTCTTCATAAAAACACTTGCACATACATCATACTATTCAAATACCCAAATCATGTTTAAGATTAGACTATATTTTTAAGAATATATTTATATGCATAGATATTTTATCAACACATTTTTTCTAAATTTATAGATTTATACTAAAACGAATGATATGTTTGTTAGAGAATTTAAATTTTGTTTTATGTTTTCACGTTTCTTAATTCACAAAATTTATATTTTTGAATTTTGTGATTTAAATGGTTGTAAATTGAAAAGTAATTATTCTTTTGTTTTCACATTTCACACAAAAATTTGGTAACAACAAAAATTTTATCTATCAAAACTCTTCTTGAATGATGTGATTCAGACAATGTAAATTCTAAAAACAACCATTTGATTGCATCAGTAATTTGAATTTTAAATTTCAAAAAGTAAAATTATATCCAATACATTATATGCATTATGTAATATCTTATAAATTATATAAGAATACAAAACAATAACTATATAAATGTTTATGTTCATTTACAAACTTGGTTCATGTAGTTTTAAAACAATAAATTTTAGTCTATATTAATTAGAATTTGTCATTTTAGTTTGATAAATTGATAGAAAATAGTTTTCGTATGAACTATTTTTGAAAATTTTATCTAAATATACATTAAACTCTTAACTTTCTCTTACCAATAGAGACTAAAATGGTATGATTTAACTATATAATACGAATCACATTTAAACACAATTATTGGGGTAAATCAGAGAGGGCAGCTCGAAAAGACTAGTTTCCGTTTTATATTTTCAAAACTATTGTTGCTTTTACTCTTTGATTTTTCTAAACCCTACTTCATTTCACGCCGGCCACCCCCTCCACCCCCTCCACCCCCTCTCTCCCTCCATCTCACTGTCACCCACTGCACGCCCGACGTGATCTCACCGTCTACCGTCGCACGCTTCACTCTCAGCTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGGTTATTTCTGTTTTTCTTTTCTAGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGGTTTTGATTTTTCTTCTATCTTTTCATTTTGTTTCGTTCATTATGTTGTTTAATATGTCCACCCACAAAGAAGTAGAGCAAAAGATGTATGGTTTTTATTTTACTCTTTTGTTGATTTCTTATTCAGTCAATGTGTAACCAATCCAAATGAAAACATAAAAAGGACAATGTATGCTTCGCATATTAGGAAAACAGTACGAACTTACTTGAACAGAACTCTAGAATTCTAGAGGTTGCACAACTGTGTCTTTTGAGTTCTAAAGATTAAGAAAATAGTAAATTGAATCAATAAATAATGAATGACAAATGAAAAGAGCGTATTATTCTTATCCGAATAACTAAATAAAATGGAACAGAAAAGTTCAATAAACTTATAAAGCACAAAAGAAAACTGGCCTTCATAATCAGGTACAATAAACTTGTTCAATAAGCTGTCTTGAAAATATTTTTTCTGTTACAAAAGAACAGCAAAATACCATGGAAAAACAGATAGACACACACAAAAAGGATCCACCAGAACAACGAATGGGTAAACCTGGAGTTTGCTTGAGTGTTGAAATAATTATTGATGCATATGAACTGGTGTAGGTTGGGGCAAATAGAAATAAAGGATCTCCTTTATGGTAAATAGAAGCATTAGTTTTTTCAAAATGTGAAATCCTCCAAATTTGGACCTATTTGGAATATAACTTTTTTTTTTTAATTTTTAAAAACAGGATTTCAAATCTCAACAAATTCAAAATTCTTCTCTTCCGTTTCTTTTCCATCCAAACATGTCGATCAAATTCAGGGGTTCCCAACATGTGTTTATGTTTTTATTTTCTTTCTGCTGATTAAGAAGTTTGGAATATTGTGGCAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGGTTAAAACCTGTGGCATGTCTTAACGAGTTTTATGAATTAGTAGTTGGACAGTTATCCACTCTTTTCTTTTGGTTACTCTTGTAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGGTTTGCAACTCCTATTCCATTCTTCTTTGTCAATGCGTTACATATAGTATAGTTTATCCGTTTTTATTAGACTTGCTAGCTTTTGGCCATTTTTCTACACGGTCTCCTGCTTCCACTCTTTTGATATGAGCCATTCAACCAGATTAGTAATGCTATATCTATTAATTTTTTCATAGGTACTTGTAGAGAAAAAGGATTTAGTTACAGTTTTTCTCATAAGTTATTCCGAACACAATATTTCACATGGGAGCAATTTCGGAACCTAGAACTGAATTGTACTCATTTTTTTTCTCTACATTCTGCTGTTGTTTCCAGGTTGCAATTTGGAAAGTTAAAATTTGTGCTATGCTATGTTTTTTTTATTGGTAGGATTCGACTTAAACATTAATTTGACAGACTGTAAGGCAATCTGTAGATGAATAAGTATTGAGGAGCTCCTTTGTTTTCTTGACAGTGTGACAAAACATAGTGGAGCTCCTAAAAAGCAATTGTTTTTTGTACTTGAGAAGTTGCACTTTTCAAATTGTCACAGATGAGGCTAAAATATGTGGTGATGTAAATTCGTCAGACTAACTAAAATACGTGTAAAATATATTATTGTTTGGTAGCTTTTATTCAAGTGCTTATTGTTAGTTGCACATGAGATCATAAGGGGATCTTTTCTGACATTTATATTACCCTTTTGCCTTGTCAGTCTTGAACGCCGTCTGTTGATTTTCTCATGTTTGCTTTTATATCTTGCCTACTTGATTTTGATGATTTGTGTTGAACTTCTGTACTGATATCGACTAAAATTCTTCTATGTATTTCATCCCGAGCAAGCTTGAATGATTATTCTTTTATGGATTTATCTTTTGCAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGTAAGAGTGACAGCTAAACTATTTACTCGTTTTTTGTTGCTAATGCAATATATTGTAAGAATAAATTTTTGCTGGCGTGTATTCTCTTGGACTGGTACTATACATTTTCAATTTTCTACCTCTTTGTGCGATTTAGAATCATTTTAGTAACCATAACGATCCAATTGCCAACTTGAGCACCACCTAATTAGGTAAGGTATAGCTCTCAGCCAAAAAATCAGAGGTTTAAATTCCTATCCGCACATGTTGAACTTAGACTAGGAATGCCAGTTTGTTAGCAAAATTTATTTACTTTCACATATCCAGGCATTAAGTTGGATGAAAATACTAGAATCTGGAAACTTAACACTGTTTGGAAGATGCCTAGAAGACATGTTCTTCTAATAATTGTTTCTTAAAAGGATTATGGAATTACGTGTTCTACTTAATGCTAATTCTGCAGTATTAAGTGTAATATATTTGTTTCTTAGTGATTTATTTGCTACAATATCATCATAACAACTTTGTTGTCCTGTCTGTGGTTGGTTTACTAATGTAAATCTTTCTTTGGTTGTGCTTTTTTATTTTTTTTCCTCTTAATTTCTTTTTGTTTCCAAATCCTGGAAGTCGTTCTCAAATTCGTGTTCAAATTCTAACTTGAATGATTTTTCCTCCTCTTCAAAAGGCATTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCAGAACCAAAGGACATCGCCAGGTATATCTAGACTATCCAAAAAGATCAGAAGAGTTGCTTATTCAAGTTGTCTGATGACCTCTTTCTACTATGTTTTCTATCTCAGGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAA

mRNA sequence

ATGGAAATATGGAGAATACCAATGAACAGGAGAGAGATAGAAGTAGTACTGAGGGTGAAGAGAGGCGACGACTTCGGCAAGAACAGAAGGGATGAGCGGCGGCAGCAATGCAAGCGGGAGACGGGCGGCGAGGCGTTTAGCGACAATGTAAATTCTAAAAACAACCATTTGATTGCATCACTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCATTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCAGAACCAAAGGACATCGCCAGGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAA

Coding sequence (CDS)

ATGGAAATATGGAGAATACCAATGAACAGGAGAGAGATAGAAGTAGTACTGAGGGTGAAGAGAGGCGACGACTTCGGCAAGAACAGAAGGGATGAGCGGCGGCAGCAATGCAAGCGGGAGACGGGCGGCGAGGCGTTTAGCGACAATGTAAATTCTAAAAACAACCATTTGATTGCATCACTTCCGTCATCTCAATCTCCTGACGAAGTCCCCGTCGCTTCCTCCCTCCACACTCGCTCGCCCCTAGACCAATCGGAGTTGAAAGTGGTTCAGTCCCTCACGCCCACTGCCGGTCATTTTTCAGATCCCCGAGCATGTGTAGGAGTTGTATATAGATCAAAGGCCATAAGGATCACCACCATGGCGAACAGACGGTGTTTACAAGTACTAACTCGTCATGCCTCAGCCATTTTTTCCACCAAGCCATATATCCACCCGCTGAAAACTGCACCTTCCTTCCTTTCCCAAAATTTCCGTACACATGCTTCTCTATCAAACTGCCTTTCTGCTAAAACTGATCCTTCTTTGTGTACCTACTGGCCACATACACGTTATCTCTCATCTGATAGTCGGAATGGCAGTGAAGATGATTTTACTGAAGATGAAGATGAAGATGAAGATGATGAAGCATATGATAGTGAGGATGATGGTATTTCCACGTCGAGTAGGGTTATGAAAAAGGAGTATACAAAGGAGGAGATGGAGGCTGAAGCAGCTGCTATTGGATATAAAGTATTAGGGCCACTTGATCAATCTGAAGGGGTTTTCAAGCCTTACGAGCCTGCTTTTGCTGTTGTTCAGATTGGCTCTCACCAATTCAAGGTTAGCAATGGAGACAGTATTTTTACTGAGAGATTAAAATTCTGTGATGTGAATGACAAGTTGATATTGAATAAGGTTCTCTTGGTTGGCTCAAGTAGCCAAACGATTGTAGGTAGGCCAACAGTACCAAGTGCAGTTGTTCAAGCAGTTGTTGAGGAACATGCATTAGATGCAAAAGTAATCATCTTCAAGAAAAAAAGGAGGAAGAATTACCGCAGAACCAAAGGACATCGCCAGGAATTAACAAAGTTGAGGATCGTCGATATTCAAGGTGTCGAAAAACCAGAAAACATTGGAAAGCCTTCAAAAGTAGCGGGTAAGAAGCAAGAACAAGTTGCAGTAGCTGCTTAA

Protein sequence

MEIWRIPMNRREIEVVLRVKRGDDFGKNRRDERRQQCKRETGGEAFSDNVNSKNNHLIASLPSSQSPDEVPVASSLHTRSPLDQSELKVVQSLTPTAGHFSDPRACVGVVYRSKAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA*

Homology

[Close]

BLAST of CSPI06G18620 vs. ExPASy Swiss-Prot
Match: Q8L9A0 (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL21M PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-63
Identity = 144/278 (51.80%), Postives = 192/278 (69.06%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFR----THASLSNCLSAKTDPSL 180
           MA+ RC + L+R A+ +FS    I+  ++  SF    F     +H ++    S   +   
Sbjct: 1   MASLRCFRELSRRATTVFS----INQTRSISSFHGIEFSGTSISHGTVIPNRSLTRNLPW 60

Query: 181 CTYW--PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEM 240
            ++W     R  SS++++  ED+ + + ++D+++E  D ED    ++   +++EY+  E 
Sbjct: 61  YSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFED----SADMEVEREYSPAEK 120

Query: 241 EAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK 300
             EA  IGYKV+GPL  SE +FKPYEP FA+VQIGSHQFKVSNGDSIFTE+LKFCD+NDK
Sbjct: 121 VEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDK 180

Query: 301 LILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQE 360
           L L KVLL+GS+SQTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT+GHRQE
Sbjct: 181 LELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQE 240

Query: 361 LTKLRIVDIQGVEKPEN--IGKPSKVAGKKQEQVAVAA 391
           LTKLRI DIQG+EKPE   + KPSK A  +Q +  + A
Sbjct: 241 LTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of CSPI06G18620 vs. ExPASy Swiss-Prot
Match: P24613 (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.5e-25
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 0


Query: 258 PYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVP 317
           P E  FAVV IGS Q+ V  G  I+T+RLK   VNDK++LNKVLLVG+ + T +G P V 
Sbjct: 119 PREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVT 178

Query: 318 SAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGVEKPENIGKPSK 377
           +A V AVVEE  LD KVI+FK K++KNYRR  GHRQ +T+++I  I G E        ++
Sbjct: 179 NAAVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEAE 238

Query: 378 VAGKKQEQVAVAA 391
           V  K++ +    A
Sbjct: 239 VEAKEEAEAEAEA 251

[Close]

BLAST of CSPI06G18620 vs. ExPASy Swiss-Prot
Match: P51412 (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-18
Identity = 74/225 (32.89%), Postives = 113/225 (50.22%), Query Frame = 0


Query: 154 LSQNFRTHASL-----SNCLSAKTDPSLCTYWPHTRYLSSDSRNGSEDDFT-----EDED 213
           L   F  H ++     S  L + + PSL    P T +LS  + + S   FT      +  
Sbjct: 10  LCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAPKFAESV 69

Query: 214 EDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAF 273
            + + E  D E   +S  S V +++  +EE+                            F
Sbjct: 70  VEAEPETTDIEAVVVSDVSEVTEEKAKREEI----------------------------F 129

Query: 274 AVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQA 333
           AV+ +G  Q+ V  G  ++T+RLK  +V+D+++LNKVLLVG+ + T +G+P V +A V A
Sbjct: 130 AVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHA 189

Query: 334 VVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGVEK 369
           VVE   L+ KV++FK K +K YRR  GHRQ  T++RI  I G E+
Sbjct: 190 VVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEE 206

[Close]

BLAST of CSPI06G18620 vs. ExPASy Swiss-Prot
Match: B6IR01 (50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplU PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-17
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 263 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQ 322
           FAV++ G  Q+KV+NGD I  E+L   D    + L+ VL+V  + +T +G P V  A V 
Sbjct: 2   FAVIRTGGKQYKVANGDVIKVEKL-VADAGATVTLDDVLMVSDAGKTTIGTPVVQGAAVT 61

Query: 323 AVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQ 365
           A V   +   K+IIFKKKRR+NYRR  GHRQ+LT LRI  IQ
Sbjct: 62  AEVVAQSRGPKIIIFKKKRRQNYRRKNGHRQDLTVLRITGIQ 102

[Close]

BLAST of CSPI06G18620 vs. ExPASy Swiss-Prot
Match: A8GYB4 (50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rplU PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-16
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 263 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGS-SSQTIVGRPTVPSAVV 322
           FAV++ G  Q+KV     I  E+++  ++  K+ LN+VL++G  S  + +G P V  AVV
Sbjct: 2   FAVIKAGGKQYKVDQNSVIKVEKIE-GELGSKIQLNQVLMMGEYSKPSFIGTPLVKGAVV 61

Query: 323 QAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDI 364
            A +     D K+I+FKKKRRKNYRR  GHRQELT+L+I+DI
Sbjct: 62  TAEITNQLRDNKIIVFKKKRRKNYRRKAGHRQELTELKILDI 102

[Close]

BLAST of CSPI06G18620 vs. ExPASy TrEMBL
Match: A0A0A0KFG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.7e-142
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 180
           MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 181 PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAA 240
           PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAA 120

Query: 241 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 300
           IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 301 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 360
           LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 361 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           VDIQGVEKPENIGKPSKVA KKQEQVAVAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of CSPI06G18620 vs. ExPASy TrEMBL
Match: A0A5A7T510 (50S ribosomal protein L21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold119G00170 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 2.2e-139
Identity = 265/281 (94.31%), Postives = 269/281 (95.73%), Query Frame = 0


Query: 110 VYRSKAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLS 169
           +Y  KAIRITTMANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLS
Sbjct: 37  LYIDKAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLS 96

Query: 170 AKTDPSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEY 229
           AKTDPSLCTYW HTRYLSSDSRNG+EDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEY
Sbjct: 97  AKTDPSLCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEY 156

Query: 230 TKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC 289
           TKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC
Sbjct: 157 TKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC 216

Query: 290 DVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTK 349
           DVNDKLILNKVLLVGSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTK
Sbjct: 217 DVNDKLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTK 276

Query: 350 GHRQELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           GHRQELTKLRIVDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 277 GHRQELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 317

[Close]

BLAST of CSPI06G18620 vs. ExPASy TrEMBL
Match: A0A1S3CMX4 (50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 1.1e-138
Identity = 263/277 (94.95%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 114 KAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTD 173
           KAIRITTMANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTD
Sbjct: 3   KAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTD 62

Query: 174 PSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE 233
           PSLCTYW HTRYLSSDSRNG+EDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE
Sbjct: 63  PSLCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE 122

Query: 234 MEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND 293
           MEAEAAAIGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND
Sbjct: 123 MEAEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND 182

Query: 294 KLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 353
           KLILNKVLLVGSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ
Sbjct: 183 KLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 242

Query: 354 ELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           ELTKLRIVDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 243 ELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CSPI06G18620 vs. ExPASy TrEMBL
Match: E5GBZ0 (50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 1.1e-138
Identity = 263/277 (94.95%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 114 KAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTD 173
           KAIRITTMANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTD
Sbjct: 3   KAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTD 62

Query: 174 PSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE 233
           PSLCTYW HTRYLSSDSRNG+EDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE
Sbjct: 63  PSLCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE 122

Query: 234 MEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND 293
           MEAEAAAIGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND
Sbjct: 123 MEAEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND 182

Query: 294 KLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 353
           KLILNKVLLVGSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ
Sbjct: 183 KLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 242

Query: 354 ELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           ELTKLRIVDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 243 ELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CSPI06G18620 vs. ExPASy TrEMBL
Match: A0A6J1KDZ7 (50S ribosomal protein L21, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111494006 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 1.3e-115
Identity = 226/271 (83.39%), Postives = 245/271 (90.41%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 180
           MANRRCLQVLTRHASAIFSTKPYIH LK +PSFLSQNFRTH S+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKISPSFLSQNFRTHVSVPNCLFAKLDPSLCTNW 60

Query: 181 PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDS-EDDGISTSSRVMKKEYTKEEMEAEAA 240
            H+RYLSSDS+NG+EDD TE ED+DEDDE YDS EDD  S  SR M+KEYTKEE EAEAA
Sbjct: 61  SHSRYLSSDSQNGNEDDDTE-EDDDEDDEDYDSGEDDDSSVPSRGMQKEYTKEEKEAEAA 120

Query: 241 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 300
           +IGYKV+GP+D+S GVFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILN+
Sbjct: 121 SIGYKVVGPIDRSSGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNR 180

Query: 301 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 360
           VLL+GSS QTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 181 VLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240

Query: 361 IVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           I+DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IIDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CSPI06G18620 vs. NCBI nr
Match: XP_004144239.1 (50S ribosomal protein L21, mitochondrial [Cucumis sativus] >KGN47534.1 hypothetical protein Csa_018956 [Cucumis sativus])

HSP 1 Score: 515.0 bits (1325), Expect = 5.7e-142
Identity = 269/270 (99.63%), Postives = 269/270 (99.63%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 180
           MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 60

Query: 181 PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAA 240
           PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAA
Sbjct: 61  PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAA 120

Query: 241 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 300
           IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV
Sbjct: 121 IGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKV 180

Query: 301 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 360
           LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI
Sbjct: 181 LLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRI 240

Query: 361 VDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           VDIQGVEKPENIGKPSKVA KKQEQVAVAA
Sbjct: 241 VDIQGVEKPENIGKPSKVADKKQEQVAVAA 270

[Close]

BLAST of CSPI06G18620 vs. NCBI nr
Match: KAA0038450.1 (50S ribosomal protein L21 [Cucumis melo var. makuwa])

HSP 1 Score: 505.4 bits (1300), Expect = 4.5e-139
Identity = 265/281 (94.31%), Postives = 269/281 (95.73%), Query Frame = 0


Query: 110 VYRSKAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLS 169
           +Y  KAIRITTMANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLS
Sbjct: 37  LYIDKAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLS 96

Query: 170 AKTDPSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEY 229
           AKTDPSLCTYW HTRYLSSDSRNG+EDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEY
Sbjct: 97  AKTDPSLCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEY 156

Query: 230 TKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC 289
           TKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC
Sbjct: 157 TKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFC 216

Query: 290 DVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTK 349
           DVNDKLILNKVLLVGSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTK
Sbjct: 217 DVNDKLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTK 276

Query: 350 GHRQELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           GHRQELTKLRIVDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 277 GHRQELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 317

[Close]

BLAST of CSPI06G18620 vs. NCBI nr
Match: XP_008464840.1 (PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841.1 PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >ADN33989.1 50S ribosomal protein l21 mitochondrial precursor [Cucumis melo subsp. melo])

HSP 1 Score: 503.1 bits (1294), Expect = 2.2e-138
Identity = 263/277 (94.95%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 114 KAIRITTMANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTD 173
           KAIRITTMANRRCLQVLTRHASAI STKPYIH LK APS L +NF THASLSNCLSAKTD
Sbjct: 3   KAIRITTMANRRCLQVLTRHASAILSTKPYIHTLKIAPSLLFENFHTHASLSNCLSAKTD 62

Query: 174 PSLCTYWPHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE 233
           PSLCTYW HTRYLSSDSRNG+EDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE
Sbjct: 63  PSLCTYWSHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEE 122

Query: 234 MEAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND 293
           MEAEAAAIGYKVLGPLDQSEG+FKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND
Sbjct: 123 MEAEAAAIGYKVLGPLDQSEGIFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVND 182

Query: 294 KLILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 353
           KLILNKVLLVGSSSQTIVGRPTVPSA VQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ
Sbjct: 183 KLILNKVLLVGSSSQTIVGRPTVPSAFVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQ 242

Query: 354 ELTKLRIVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           ELTKLRIVDIQG+EKPENIGKPSKV  KKQEQVAVAA
Sbjct: 243 ELTKLRIVDIQGIEKPENIGKPSKVTDKKQEQVAVAA 279

[Close]

BLAST of CSPI06G18620 vs. NCBI nr
Match: XP_038886741.1 (50S ribosomal protein L21, mitochondrial [Benincasa hispida])

HSP 1 Score: 469.2 bits (1206), Expect = 3.6e-128
Identity = 248/271 (91.51%), Postives = 256/271 (94.46%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 180
           MANRRCLQVLTRHAS IF TKPYIHPLK APSFLSQNF THAS+SN LS K DPSLCTY 
Sbjct: 1   MANRRCLQVLTRHASTIFFTKPYIHPLKIAPSFLSQNFHTHASISNYLSTKIDPSLCTYG 60

Query: 181 PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYD-SEDDGISTSSRVMKKEYTKEEMEAEAA 240
            HTRYLSSDSRNG+EDDFTEDEDEDEDDEAYD SEDDGIS SSR M+KEYTKEE EAEAA
Sbjct: 61  SHTRYLSSDSRNGNEDDFTEDEDEDEDDEAYDSSEDDGISVSSRGMQKEYTKEEKEAEAA 120

Query: 241 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 300
           AIGY V+GPLDQS+GVFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK
Sbjct: 121 AIGYTVVGPLDQSKGVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180

Query: 301 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 360
           VLL+GSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 181 VLLLGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240

Query: 361 IVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           I+DIQGV+KPENIGKPSKVAGKKQEQVAVAA
Sbjct: 241 IIDIQGVDKPENIGKPSKVAGKKQEQVAVAA 271

[Close]

BLAST of CSPI06G18620 vs. NCBI nr
Match: KAG7030035.1 (50S ribosomal protein L21, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 430.6 bits (1106), Expect = 1.4e-116
Identity = 230/271 (84.87%), Postives = 246/271 (90.77%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFRTHASLSNCLSAKTDPSLCTYW 180
           MANRRCLQVLTRHASAIFSTKPYIH LK APSFLSQNFRTHAS+ NCL AK DPSLCT W
Sbjct: 1   MANRRCLQVLTRHASAIFSTKPYIHSLKIAPSFLSQNFRTHASVPNCLFAKIDPSLCTNW 60

Query: 181 PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDS-EDDGISTSSRVMKKEYTKEEMEAEAA 240
            H+RYLSSDS+NG+EDD TE ED+DEDDE YDS EDD IS  SR M+KEYTKEE EAEAA
Sbjct: 61  SHSRYLSSDSQNGNEDDDTE-EDDDEDDEDYDSGEDDDISVPSRGMQKEYTKEEKEAEAA 120

Query: 241 AIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 300
           AIGYKV+GP+D+S  VFKPYEP FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK
Sbjct: 121 AIGYKVVGPIDRSSEVFKPYEPVFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNK 180

Query: 301 VLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 360
           VLL+GSS QTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR
Sbjct: 181 VLLLGSSRQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLR 240

Query: 361 IVDIQGVEKPENIGKPSKVAGKKQEQVAVAA 391
           I+DI+G++KPE I K SKVAGK  +QV+VAA
Sbjct: 241 IIDIEGIDKPEIIEKSSKVAGKNPKQVSVAA 270

[Close]

BLAST of CSPI06G18620 vs. TAIR 10
Match: AT4G30930.1 (Ribosomal protein L21 )

HSP 1 Score: 244.2 bits (622), Expect = 1.7e-64
Identity = 144/278 (51.80%), Postives = 192/278 (69.06%), Query Frame = 0


Query: 121 MANRRCLQVLTRHASAIFSTKPYIHPLKTAPSFLSQNFR----THASLSNCLSAKTDPSL 180
           MA+ RC + L+R A+ +FS    I+  ++  SF    F     +H ++    S   +   
Sbjct: 1   MASLRCFRELSRRATTVFS----INQTRSISSFHGIEFSGTSISHGTVIPNRSLTRNLPW 60

Query: 181 CTYW--PHTRYLSSDSRNGSEDDFTEDEDEDEDDEAYDSEDDGISTSSRVMKKEYTKEEM 240
            ++W     R  SS++++  ED+ + + ++D+++E  D ED    ++   +++EY+  E 
Sbjct: 61  YSHWYRSQDRCFSSNTKDTDEDEESSEGEDDDEEEGEDFED----SADMEVEREYSPAEK 120

Query: 241 EAEAAAIGYKVLGPLDQSEGVFKPYEPAFAVVQIGSHQFKVSNGDSIFTERLKFCDVNDK 300
             EA  IGYKV+GPL  SE +FKPYEP FA+VQIGSHQFKVSNGDSIFTE+LKFCD+NDK
Sbjct: 121 VEEAEEIGYKVMGPLKPSERLFKPYEPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDK 180

Query: 301 LILNKVLLVGSSSQTIVGRPTVPSAVVQAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQE 360
           L L KVLL+GS+SQTI+GRP +P A V AVVEEHALD KV+IFKKKRRKNYRRT+GHRQE
Sbjct: 181 LELTKVLLLGSASQTIIGRPILPDATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQE 240

Query: 361 LTKLRIVDIQGVEKPEN--IGKPSKVAGKKQEQVAVAA 391
           LTKLRI DIQG+EKPE   + KPSK A  +Q +  + A
Sbjct: 241 LTKLRITDIQGIEKPEPKIVHKPSKEAVTEQTKAELVA 270

[Close]

BLAST of CSPI06G18620 vs. TAIR 10
Match: AT1G35680.1 (Ribosomal protein L21 )

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-19
Identity = 74/225 (32.89%), Postives = 113/225 (50.22%), Query Frame = 0


Query: 154 LSQNFRTHASL-----SNCLSAKTDPSLCTYWPHTRYLSSDSRNGSEDDFT-----EDED 213
           L   F  H ++     S  L + + PSL    P T +LS  + + S   FT      +  
Sbjct: 10  LCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAPKFAESV 69

Query: 214 EDEDDEAYDSEDDGISTSSRVMKKEYTKEEMEAEAAAIGYKVLGPLDQSEGVFKPYEPAF 273
            + + E  D E   +S  S V +++  +EE+                            F
Sbjct: 70  VEAEPETTDIEAVVVSDVSEVTEEKAKREEI----------------------------F 129

Query: 274 AVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNKVLLVGSSSQTIVGRPTVPSAVVQA 333
           AV+ +G  Q+ V  G  ++T+RLK  +V+D+++LNKVLLVG+ + T +G+P V +A V A
Sbjct: 130 AVIMVGGRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHA 189

Query: 334 VVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRIVDIQGVEK 369
           VVE   L+ KV++FK K +K YRR  GHRQ  T++RI  I G E+
Sbjct: 190 VVESQGLNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEE 206

The following BLAST results are available for this feature:

BLAST of CSPI06G18620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9A0	2.5e-63	51.80	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P24613	3.5e-25	48.87	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL21 P...	[more]
P51412	3.1e-18	32.89	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
B6IR01	5.9e-17	49.02	50S ribosomal protein L21 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
A8GYB4	2.2e-16	47.06	50S ribosomal protein L21 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=...	[more]

BLAST of CSPI06G18620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFG2	2.7e-142	99.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G357000 PE=3 SV=1	[more]
A0A5A7T510	2.2e-139	94.31	50S ribosomal protein L21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3CMX4	1.1e-138	94.95	50S ribosomal protein L21, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502620...	[more]
E5GBZ0	1.1e-138	94.95	50S ribosomal protein l21 mitochondrial OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
A0A6J1KDZ7	1.3e-115	83.39	50S ribosomal protein L21, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CSPI06G18620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144239.1	5.7e-142	99.63	50S ribosomal protein L21, mitochondrial [Cucumis sativus] >KGN47534.1 hypotheti...	[more]
KAA0038450.1	4.5e-139	94.31	50S ribosomal protein L21 [Cucumis melo var. makuwa]	[more]
XP_008464840.1	2.2e-138	94.95	PREDICTED: 50S ribosomal protein L21, mitochondrial [Cucumis melo] >XP_008464841...	[more]
XP_038886741.1	3.6e-128	91.51	50S ribosomal protein L21, mitochondrial [Benincasa hispida]	[more]
KAG7030035.1	1.4e-116	84.87	50S ribosomal protein L21, mitochondrial [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of CSPI06G18620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30930.1	1.7e-64	51.80	Ribosomal protein L21	[more]
AT1G35680.1	2.2e-19	32.89	Ribosomal protein L21	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001787	Ribosomal protein L21	TIGRFAM	TIGR00061	TIGR00061	coord: 263..363 e-value: 2.1E-26 score: 90.2
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 262..365 score: 22.063932
IPR028909	Ribosomal protein L21-like	PFAM	PF00829	Ribosomal_L21p	coord: 263..363 e-value: 1.5E-31 score: 108.6
IPR028909	Ribosomal protein L21-like	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 121..387
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..225
None	No IPR available	PANTHER	PTHR21349:SF5	BNAA08G12830D PROTEIN	coord: 121..387
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 334..356
IPR036164	L21-like superfamily	SUPERFAMILY	141091	L21p-like	coord: 263..363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G18620.1	CSPI06G18620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome