CSPI06G18430 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI06G18430
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr6: 16798477 .. 16798683 (-)
RNA-Seq ExpressionCSPI06G18430
SyntenyCSPI06G18430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGGGACGGTGGCGGAAGCGTCGAACCCTGCGGTTCAAATGACGATGGGATACAAAGGTGGGTGTAGAAAAATGATTTCTGTGATTCCAAAGCAGAGACAGTTAGTGAAGACAATGATGTATCACTCCATAAAGTGTTTTATTATATCATTCTTTCGTCTATCGTTCTCCACTGCTACCGGTACCGGAGCTCCTCCGTAG

mRNA sequence

ATGGTGGAGGGGACGGTGGCGGAAGCGTCGAACCCTGCGGTTCAAATGACGATGGGATACAAAGGTGGGTGTAGAAAAATGATTTCTGTGATTCCAAAGCAGAGACAGTTAGTGAAGACAATGATGTATCACTCCATAAAGTGTTTTATTATATCATTCTTTCGTCTATCGTTCTCCACTGCTACCGGTACCGGAGCTCCTCCGTAG

Coding sequence (CDS)

ATGGTGGAGGGGACGGTGGCGGAAGCGTCGAACCCTGCGGTTCAAATGACGATGGGATACAAAGGTGGGTGTAGAAAAATGATTTCTGTGATTCCAAAGCAGAGACAGTTAGTGAAGACAATGATGTATCACTCCATAAAGTGTTTTATTATATCATTCTTTCGTCTATCGTTCTCCACTGCTACCGGTACCGGAGCTCCTCCGTAG

Protein sequence

MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRQLVKTMMYHSIKCFIISFFRLSFSTATGTGAPP*
Homology
[Close]
BLAST of CSPI06G18430 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 1  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRQLVKTMMYHSIKCFIISFF 55
          +VE    EAS+  VQM MGYK G  KM SVIP +R+LVK MMY SIK F+IS F
Sbjct: 34 VVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRF 87

[Close]
BLAST of CSPI06G18430 vs. NCBI nr
Match: KAE8647204.1 (hypothetical protein Csa_019006, partial [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 3.3e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRQLVKTMMYHSIKCFIISFFRLSFST 60
          MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQR+LVKTMMYHSIKCFIISFFRLSFST
Sbjct: 3  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRKLVKTMMYHSIKCFIISFFRLSFST 62

Query: 61 ATGTGAPP 69
          ATGTGAPP
Sbjct: 63 ATGTGAPP 70

[Close]
BLAST of CSPI06G18430 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_018325 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-06
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 1  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRQLVKTMMYHSIKCFIISFF 55
          +VE    EAS+  VQM MGYK G  KM SVIP +R+LVK MMY SIK F+IS F
Sbjct: 34 VVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRF 87

The following BLAST results are available for this feature:
BLAST of CSPI06G18430 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI06G18430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH012.5e-0661.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of CSPI06G18430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647204.13.3e-2998.53hypothetical protein Csa_019006, partial [Cucumis sativus][more]
KGN47677.15.2e-0661.11hypothetical protein Csa_018325 [Cucumis sativus][more]
BLAST of CSPI06G18430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G18430.1CSPI06G18430.1mRNA