CSPI06G17410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI06G17410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr6: 15649187 .. 15653059 (+)
RNA-Seq Expression	CSPI06G17410
Synteny	CSPI06G17410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTGGCCGTACAGTCTGGCGGTTTTGAAAGGCGTGAAAAGGCTGTTTCTTTCTTACAAAAGCGGGGGACGTATCTTTACACGTGGCACCATTTAAATGGTTTTATGGGATGAACGTACGTCGGTATAATTATTTTAATATTTCTTTTAAACAGTTCGTGGGAGGAAGCAAAATGGTATTTTATTTATTTATTTTTGCATATTTTAACCTTTTTCTTTTAGTTAATAATAATTATTAATTAACTAATTAAAGCATATGCATATGTAGTCTTATGAAACCAGACATCTCGTCTACAAAATATAAATTGAACATGAACATGTTAATAATAGTAAGAGATAAAAGTTTGTGTCAAAGAAAATTGGTTTGAATGAAACAATGGACTCATGAACGAAAGTAAAATATTTATTCGTATCGAGTTTGATGTTATAATTAAAATAACACAATTGCTAAAATAGAAAATAGGCATCAGATATAATTGAGTAAGAAGAGGTTGAAGGAAGATGAGAAAAGTGTGGCAGTGGACAACTTGATGAACTCATGACATAATCATATCCTTTGAAACTGTGAAACCAAGAAAATAAGATGATGAGTTGCATTAGCAACAGCTGCCTTTAAGTTTTATTTGTTTGTTTACTATTATTATTATTTGGGAGTATACGAAAGAAAGACAAAAAAGTCACCAATAGAACACTTCGACTATGCTTTCAGAAAGAATGTGTTTGATGTTAATCCATTTATTTTTTATATCTTTACATTATGTTTCATTTTCATATTCTATTATTAAGAACAATTAAATTTTCATTAGGTTAATTTTTAAAGTTTTATAAACTTAAACTTAAAAAATTGTCAAACCTGTTGGGCTTATTTCACCCTTGAAGTCCAGCCCATTAGGTCAACTTTACTATGAAATTAACTAATGTACAATGCAATTAAAAAGAAAAGTAGTAAAGTAGTGACGGTAAGACAGTGAAAAAAGAAAGAAAAATAAAATAAATGTGATTCGTATTTCAGTCTTTTGGGGATCGATTGGTGGTCCGATCAAGCTGAAATTTTGACTGGTGTATTCTTGGCACGAGTGGAGATTTTGTTTGGAGCTATCTACAATTAGATTCTAGTTGATAGTTGACTACCACATATTGTGAGATTTTTCCTTTTTTCTTTCATTGTCATTGTTGTTTGTTGTCGGGATTGTTATTCTCGAGATACTTGCCTCTAGTTGTGACTAGGGAGAACTTTGTTGTACCCATTAAAGATTATAGTGAAGATTTTGACTTCGGTCCGTGGTTTTTTACTCCTCACGTTATACTTTGATTATTATTATTATTATTATTGAGTAGTGTTCTATCAGGTTCACACAAGAGTGTGATAATTGATCCAAGGTGAAGGTGTTTATCCCAACAAAGTGATTAATTGGGATTTAATTGGAATTGTCTTGTGTTGAATATGGATACTAGCTCAGCTAAGATGGTTACCCTTAATGGGTCAAATTATCAAGTATCGAAAAGAAAAATGGAAGACATTGTGTGTAAATGACTTGCACCTTCCTGTTTTTTCTTTCCTGTTTTTTCTGATGAGAAGCCTGACAACAAAACTGATAAAGAATGGGAATTATGTCATAGGAAAGTGTGTGGGTTTATGAGGCTATGGGTAGAAGATAACTTTCTAAACCATATTTGTGAAGAAACTCATGCGCGAACTATGTGGAATAAACTTGAATCGCTATGTGTCCCTAAAACTGATAATAATAAAATGTTTTTGATTAAACAGATGATGAAGTTAAAGTATCAAGATGGAGCACCTATGTTAGATCACTTGAATACATTTCAAGGTATTTTGAATCAGCTATCTAGAATGAATATCAAGTTTGAGGATGAGATACATGGGTTATGGGTGCTTGGTACATTGCCGGACTCGTGGAAAATATTTAGAACTTCCTTATCGAACTCAGCCTCAAATGGTGTACTAAGTATGGACCTAGTAAAAAGTAACGTGTTGAACGAGGAGATGAGAAGAAAGTCTTAAAGTTCTTCTTCACAATCAGATGTTATGGTTACTGAAAAGAGGGGGAGGAGTAAAAGTAAGAGTCCAAGAGGTAATAACAGAAGCAAAAGCAGGAGTGACCAGTTTGCAAATGTTGAGTGTCACTATTGCCATGAAGAAGGCATATAAAGAAGTATTGTCGAAAATTGAAAAGAGACAGTAAAAATCATAAGGGCAAGGAAAAGAAGAATGATGATGATAGCAATGCTGATACAATCACTGTAGCCACTGAAGATTTTTACATCTTGTTTGATGGTGATGTTGTAAATTTGCGACACAACATAGCAGTTGGGTGATTGATAGTGGTGCATCAGTTCGTGCTACTTCGAAAAGGGAATTTTTTGCATCCTATACTCCTGGTGATTTTGGCAGTGTTAGGATGGGTAATGACGGATCAACAAATACAGTTGGCATCGAAGATGTACACTTGAAGAACAGAAATGGTTCTAGGCTGATTTTGAAAAATGTGAAACATATTCTTGATATTCGCATGAACTTGATTTCTACAGGTAAGCTTGATGATGAAGGTTTCTGCAATACCTTCGACAATGACATATGGAAGCACTAAAGGTTCAATGGTTATACCACAGGGACAAAAATTTTCTTCACTGTACTACATGGATGCAAAAATCATGGAGTCTGATATAAATACAGTGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAGAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCCTGATTTAAAGAGTACACCTCTAAAACGATGTCTTCATTGTTTGGCAGGAAAGCATACGAGAGTTACCTTTAAATCATCTCAACATTTAAGGAAGCCAAATTTACTAAAGTTAGTACATTCTGATGTGTGTGGTCCCATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGACATTTACTGATGATCATTCAAGGAAAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAGCGTTTAAACAATTTCATGCTTTTGTTGAGAGAAAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAGTGGATGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAAATCATGACATTCGACATCAAAAGGCACCTCCTAAGACCCCACAGTTAAATGGAATTGCTGAAAGATTGAACAAAACATTGGTTGAGAGAGTGAGATGCTTATTATCTAAATCACAGTTGCCACAATCATTTTGGGGTGAAGCTTTAAATACAGTTGTATATGTTTTCAATCTCACACCATGTGTTCCTTTGGGATCAGAAGTTCCAAACATAATATGGTCAGGTAAGGATATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTACCTAAAGATGAGAGATCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATGGCCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACTAAACAATAGCAGACATTGAGAAAATAGATGAACCAAAGTCTAAGCATAGTGATAATCTAATTGATTTGAGTTCAACCTCTTTGACACAACATTCTACACAGATAGAAGATGAGGTTCAAAATGAACAGTTTTCTGATACATATGAGAGTTTTGAGCACGTTGGGACAGAGGATAGTGTTCAGGAACAGTTAGCTGAAACAGTTGTTCCTACAGATGTTTCGCTCAGGAGATCTATCAGAGATCGACGTCCGTCAACAAGATATTCACCTAATGAATCTTTGCTATTGACTGACGGGTGA

mRNA sequence

ATGACGGTGGCCGTACAGTCTGGCGGTTTTGAAAGGCGTGAAAAGGCTGTTTCTTTCTTACAAAAGCGGGGGACTCTTTTGGGGATCGATTGGTGGTCCGATCAAGCTGAAATTTTGACTGGTGTATTCTTGGCACGAGTGGAGATTTTATACTTGCCTCTAGTTGTGACTAGGGAGAACTTTGTTGTACCCATTAAAGATTATAGTGAAGATTTTGACTTCGGTCCGTGGTTTTTTACTCCTCACAAGCCTGACAACAAAACTGATAAAGAATGGGAATTATGTCATAGGAAAGTGTGTGGGTTTATGAGGCTATGGATGATGAAGTTAAAGTATCAAGATGGAGCACCTATGTTAGATCACTTGAATACATTTCAAGGTATTTTGAATCAGCTATCTAGAATGAATATCAAGTTTGAGGATGAGATACATGGGTTATGGGTGCTTGGTACATTGCCGGACTCGTGGAAAATATTTAGAACTTCCTTATCGAACTCAGCCTCAAATGGTATGTTATGGTTACTGAAAAGAGGGGGAGGAGTAAAAGTAAGAGTCCAAGAGGTAATAACAGAAGCAAAAGCAGGAGTGACCAGTTTGCAAATGTTGAGTGTCACTATTGCCATGAAGAAGGCATATAAAGAAGTATTGTCGAAAATTGAAAAGAGACATTGGGTGATTGATAGTGGTGCATCAGTTCGTGCTACTTCGAAAAGGGAATTTTTTGCATCCTATACTCCTGGTGATTTTGGCAGTGTTAGGATGGGTAATGACGGATCAACAAATACAGTTGGCATCGAAGATGTAAGCTTGATGATGAAGGTTTCTGCAATACCTTCGACAATGACATATGGAAGCACTAAAGGTTCAATGGTTATACCACAGGGACAAAAATTTTCTTCACTGTACTACATGGATGCAAAAATCATGGAGTCTGATATAAATACAGTGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAGAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCCTGATTTAAAGAGTACACCTCTAAAACGATGTCTTCATTGTTTGGCAGGAAAGCATACGAGAGTTACCTTTAAATCATCTCAACATTTAAGGAAGCCAAATTTACTAAAGTTAGTACATTCTGATGTGTGTGGTCCCATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGACATTTACTGATGATCATTCAAGGAAAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAGCGTTTAAACAATTTCATGCTTTTGTTGAGAGAAAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAGTGGATGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAAATCATGACATTCGACATCAAAAGGCACCTCCTAAGACCCCACAGTTAAATGGAATTGCTGAAAGATTGAACAAAACATTGGTTGAGAGAGTGAGATGCTTATTATCTAAATCACAGTTGCCACAATCATTTTGGGGTGAAGCTTTAAATACAGTTGTATATGTTTTCAATCTCACACCATGTGTTCCTTTGGGATCAGAAGTTCCAAACATAATATGGTCAGGTAAGGATATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTACCTAAAGATGAGAGATCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATGGCCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTATAGAAGATGAGGTTCAAAATGAACAGTTTTCTGATACATATGAGAGTTTTGAGCACGTTGGGACAGAGGATAGTGTTCAGGAACAGTTAGCTGAAACAGTTGTTCCTACAGATGTTTCGCTCAGGAGATCTATCAGAGATCGACGTCCGTCAACAAGATATTCACCTAATGAATCTTTGCTATTGACTGACGGGTGA

Coding sequence (CDS)

ATGACGGTGGCCGTACAGTCTGGCGGTTTTGAAAGGCGTGAAAAGGCTGTTTCTTTCTTACAAAAGCGGGGGACTCTTTTGGGGATCGATTGGTGGTCCGATCAAGCTGAAATTTTGACTGGTGTATTCTTGGCACGAGTGGAGATTTTATACTTGCCTCTAGTTGTGACTAGGGAGAACTTTGTTGTACCCATTAAAGATTATAGTGAAGATTTTGACTTCGGTCCGTGGTTTTTTACTCCTCACAAGCCTGACAACAAAACTGATAAAGAATGGGAATTATGTCATAGGAAAGTGTGTGGGTTTATGAGGCTATGGATGATGAAGTTAAAGTATCAAGATGGAGCACCTATGTTAGATCACTTGAATACATTTCAAGGTATTTTGAATCAGCTATCTAGAATGAATATCAAGTTTGAGGATGAGATACATGGGTTATGGGTGCTTGGTACATTGCCGGACTCGTGGAAAATATTTAGAACTTCCTTATCGAACTCAGCCTCAAATGGTATGTTATGGTTACTGAAAAGAGGGGGAGGAGTAAAAGTAAGAGTCCAAGAGGTAATAACAGAAGCAAAAGCAGGAGTGACCAGTTTGCAAATGTTGAGTGTCACTATTGCCATGAAGAAGGCATATAAAGAAGTATTGTCGAAAATTGAAAAGAGACATTGGGTGATTGATAGTGGTGCATCAGTTCGTGCTACTTCGAAAAGGGAATTTTTTGCATCCTATACTCCTGGTGATTTTGGCAGTGTTAGGATGGGTAATGACGGATCAACAAATACAGTTGGCATCGAAGATGTAAGCTTGATGATGAAGGTTTCTGCAATACCTTCGACAATGACATATGGAAGCACTAAAGGTTCAATGGTTATACCACAGGGACAAAAATTTTCTTCACTGTACTACATGGATGCAAAAATCATGGAGTCTGATATAAATACAGTGAATGATGAAGCAAATGTTGAGCTTTGGCATAAGAGACTTAGCCATATAAGTGAGAAGGGTTTAAAGATTTTAACCAAGAAAAATCATCTTCCTGATTTAAAGAGTACACCTCTAAAACGATGTCTTCATTGTTTGGCAGGAAAGCATACGAGAGTTACCTTTAAATCATCTCAACATTTAAGGAAGCCAAATTTACTAAAGTTAGTACATTCTGATGTGTGTGGTCCCATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGACATTTACTGATGATCATTCAAGGAAAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAGCGTTTAAACAATTTCATGCTTTTGTTGAGAGAAAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAGTGGATGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAAATCATGACATTCGACATCAAAAGGCACCTCCTAAGACCCCACAGTTAAATGGAATTGCTGAAAGATTGAACAAAACATTGGTTGAGAGAGTGAGATGCTTATTATCTAAATCACAGTTGCCACAATCATTTTGGGGTGAAGCTTTAAATACAGTTGTATATGTTTTCAATCTCACACCATGTGTTCCTTTGGGATCAGAAGTTCCAAACATAATATGGTCAGGTAAGGATATATCTTACAGTCACCTACGTGTCTTTGGTTGTAAAGCTTTTGTTCATGTACCTAAAGATGAGAGATCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATGGCCAAGATGAGTTTGGTTATAGATTATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTATAGAAGATGAGGTTCAAAATGAACAGTTTTCTGATACATATGAGAGTTTTGAGCACGTTGGGACAGAGGATAGTGTTCAGGAACAGTTAGCTGAAACAGTTGTTCCTACAGATGTTTCGCTCAGGAGATCTATCAGAGATCGACGTCCGTCAACAAGATATTCACCTAATGAATCTTTGCTATTGACTGACGGGTGA

Protein sequence

MTVAVQSGGFERREKAVSFLQKRGTLLGIDWWSDQAEILTGVFLARVEILYLPLVVTRENFVVPIKDYSEDFDFGPWFFTPHKPDNKTDKEWELCHRKVCGFMRLWMMKLKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIHGLWVLGTLPDSWKIFRTSLSNSASNGMLWLLKRGGGVKVRVQEVITEAKAGVTSLQMLSVTIAMKKAYKEVLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGIEDVSLMMKVSAIPSTMTYGSTKGSMVIPQGQKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLKRCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVIEDEVQNEQFSDTYESFEHVGTEDSVQEQLAETVVPTDVSLRRSIRDRRPSTRYSPNESLLLTDG*

Homology

[Close]

BLAST of CSPI06G17410 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.3e-120
Identity = 252/666 (37.84%), Postives = 366/666 (54.95%), Query Frame = 0


Query: 102 FMRLWMMKLKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIHGLWVLGTLPDSWKIFRT 161
           +++  +  L   +G   L HLN F G++ QL+ + +K E+E   + +L +LP S+    T
Sbjct: 102 YLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLAT 161

Query: 162 SLSN--------SASNGMLWLLKRGGGVKVRVQEVITEAKA------------------- 221
           ++ +          ++ +L   K     + + Q +ITE +                    
Sbjct: 162 TILHGKTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKS 221

Query: 222 -------------------------------GVTSLQML-SVTIAMKKAYKEVLSKIEKR 281
                                          G TS Q     T AM +    V+  I + 
Sbjct: 222 KNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEE 281

Query: 282 -----------HWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGIEDV--- 341
                       WV+D+ AS  AT  R+ F  Y  GDFG+V+MGN   +   GI D+   
Sbjct: 282 EECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIK 341

Query: 342 -----SLMMK-VSAIP---------------------STMTYGSTKGSMVIPQGQKFSSL 401
                +L++K V  +P                     +   +  TKGS+VI +G    +L
Sbjct: 342 TNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTL 401

Query: 402 YYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLKRCLHCL 461
           Y  +A+I + ++N   DE +V+LWHKR+ H+SEKGL+IL KK+ +   K T +K C +CL
Sbjct: 402 YRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 461

Query: 462 AGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLK 521
            GK  RV+F++S   RK N+L LV+SDVCGPM+ +S+GG  YFVTF DD SRK+WVY LK
Sbjct: 462 FGKQHRVSFQTSSE-RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 521

Query: 522 TKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCG-PFDEYCRNHDIRHQKAPPKTPQ 581
           TKDQV Q F++FHA VER+TG KLK +R+D+G EY    F+EYC +H IRH+K  P TPQ
Sbjct: 522 TKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQ 581

Query: 582 LNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSG 641
            NG+AER+N+T+VE+VR +L  ++LP+SFWGEA+ T  Y+ N +P VPL  E+P  +W+ 
Sbjct: 582 HNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTN 641

Query: 642 KDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSR 667
           K++SYSHL+VFGC+AF HVPK++R+KLD K+  C+F+GYG +EFGYRL+DP KKK+IRSR
Sbjct: 642 KEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSR 701

[Close]

BLAST of CSPI06G17410 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 183.3 bits (464), Expect = 8.8e-45
Identity = 113/322 (35.09%), Postives = 169/322 (52.48%), Query Frame = 0


Query: 321 NVELWHKRLSHISEKGLKILTKKNHLPD---LKSTPL--KRCLHCLAGKHTRVTF---KS 380
           N  LWH+R  HIS+  L  + +KN   D   L +  L  + C  CL GK  R+ F   K 
Sbjct: 414 NFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKD 473

Query: 381 SQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQAFKQ 440
             H+++P  L +VHSDVCGP+   +L    YFV F D  +     Y +K K  V   F+ 
Sbjct: 474 KTHIKRP--LFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQD 533

Query: 441 FHAFVERKTGEKLKCVRTDSGCEY-CGPFDEYCRNHDIRHQKAPPKTPQLNGIAERLNKT 500
           F A  E     K+  +  D+G EY      ++C    I +    P TPQLNG++ER+ +T
Sbjct: 534 FVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRT 593

Query: 501 LVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPL--GSEVPNIIWSGKDISYSHLR 560
           + E+ R ++S ++L +SFWGEA+ T  Y+ N  P   L   S+ P  +W  K     HLR
Sbjct: 594 ITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLR 653

Query: 561 VFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDVIEDEVQN 620
           VFG   +VH+ K+++ K D K+   +F+GY  +  G++L+D   +K I +RDV+ DE   
Sbjct: 654 VFGATVYVHI-KNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKFIVARDVVVDE--T 713

Query: 621 EQFSDTYESFEHVGTEDSVQEQ 632
              +     FE V  +DS + +
Sbjct: 714 NMVNSRAVKFETVFLKDSKESE 728

[Close]

BLAST of CSPI06G17410 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 7.0e-34
Identity = 118/433 (27.25%), Postives = 183/433 (42.26%), Query Frame = 0


Query: 210 KAYKEVLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGST--------- 269
           +A   V S     +W++DSGA+   TS     + + P   G   M  DGST         
Sbjct: 296 RANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSA 355

Query: 270 ----------------------NTVGIEDVSLMMKVSA--IPSTMTYGSTKGSMVIPQGQ 329
                                 N + +  +    +VS    P++         + + QG+
Sbjct: 356 SLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGK 415

Query: 330 KFSSLYYMDAKIME--SDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLK-STP 389
               LY       +  S   +   +A    WH RL H S   L  +   + LP L  S  
Sbjct: 416 TKDELYEWPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHK 475

Query: 390 LKRCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSR 449
           L  C  C   K  +V F +S  +     L+ ++SDV       S+    Y+V F D  +R
Sbjct: 476 LLSCSDCFINKSHKVPFSNST-ITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTR 535

Query: 450 KIWVYTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQK 509
             W+Y LK K QV   F  F + VE +   ++  + +D+G E+     +Y   H I H  
Sbjct: 536 YTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV-VLRDYLSQHGISHFT 595

Query: 510 APPKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEV 569
           +PP TP+ NG++ER ++ +VE    LLS + +P+++W  A +  VY+ N  P   L  + 
Sbjct: 596 SPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQS 655

Query: 570 PNIIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTK 607
           P     G+  +Y  L+VFGC  +  +    R KL+ K+K C F+GY   +  Y       
Sbjct: 656 PFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPT 715

[Close]

BLAST of CSPI06G17410 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 3.5e-33
Identity = 124/455 (27.25%), Postives = 185/455 (40.66%), Query Frame = 0


Query: 217 SKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVG-IEDVSLMMK-- 276
           S     +W++DSGA+   TS     + + P   G   M  DGST  +      SL  K  
Sbjct: 324 SPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSR 383

Query: 277 ------------------------------VSAIPSTMTYGSTKGSMVIPQGQKFSSLYY 336
                                         V   P++         + + QG+    LY 
Sbjct: 384 PLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYE 443

Query: 337 MDAKIME--SDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLK-STPLKRCLHC 396
                 +  S   + + +A    WH RL H +   L  +     L  L  S     C  C
Sbjct: 444 WPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDC 503

Query: 397 LAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTL 456
           L  K  +V F  S  +     L+ ++SDV       S     Y+V F D  +R  W+Y L
Sbjct: 504 LINKSNKVPFSQST-INSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPL 563

Query: 457 KTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPKTPQ 516
           K K QV + F  F   +E +   ++    +D+G E+   + EY   H I H  +PP TP+
Sbjct: 564 KQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVALW-EYFSQHGISHLTSPPHTPE 623

Query: 517 LNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSG 576
            NG++ER ++ +VE    LLS + +P+++W  A    VY+ N  P   L  E P     G
Sbjct: 624 HNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFG 683

Query: 577 KDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSR 636
              +Y  LRVFGC  +  +    + KLD K++ CVFLGY   +  Y        +L  SR
Sbjct: 684 TSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISR 743

[Close]

BLAST of CSPI06G17410 vs. ExPASy Swiss-Prot
Match: Q12337 (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-20
Identity = 85/332 (25.60%), Postives = 149/332 (44.88%), Query Frame = 0


Query: 299 SSLYYMDAKIMESDINTVNDEANVE-----LWHKRLSHISEKGLKILTKKNHLPDLKSTP 358
           S  Y + + I +  IN VN   +V      L H+ L H + + ++   KKN +  LK + 
Sbjct: 563 SKKYLIPSHISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESD 622

Query: 359 LK-------RCLHCLAGKHTRVTFKSSQHLRKPNL---LKLVHSDVCGPMKTKSLGGALY 418
           ++       +C  CL GK T+        L+        + +H+D+ GP+         Y
Sbjct: 623 IEWSNASTYQCPDCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSY 682

Query: 419 FVTFTDDHSRKIWVYTL--KTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCG-PF 478
           F++FTD+ +R  WVY L  + ++ +L  F    AF++ +   ++  ++ D G EY     
Sbjct: 683 FISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTL 742

Query: 479 DEYCRNHDIRHQKAPPKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYV 538
            ++  N  I          + +G+AERLN+TL+   R LL  S LP   W  A+     +
Sbjct: 743 HKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTII 802

Query: 539 FN-LTPCVPLGSEVPNIIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGY 598
            N L       S   +   +G DI  + +  FG    V+    + SK+  +      L  
Sbjct: 803 RNSLVSPKKRKSARQHAGLAGLDI--TTILPFGQPVIVNNHNPD-SKIHPRGIPGYALHP 862

Query: 599 GQDEFGYRLYDPTKKKLIRSRDVIEDEVQNEQ 612
            ++ +GY +Y P+ KK + + + +   +QN+Q
Sbjct: 863 SRNSYGYIIYLPSLKKTVDTTNYV--ILQNKQ 889

[Close]

BLAST of CSPI06G17410 vs. ExPASy TrEMBL
Match: A0A5D3CVK2 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00140 PE=4 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 7.6e-201
Identity = 391/646 (60.53%), Postives = 426/646 (65.94%), Query Frame = 0


Query: 135 MNIKFEDEIHGLWVLGTLPDSWKIFRTSLSNSASNGML------------WLLKRGGGVK 194
           MNIKFE+EIHGLWVLG L DSW+IFRTSLSNSA NG+L             + ++     
Sbjct: 1   MNIKFEEEIHGLWVLGKLSDSWEIFRTSLSNSAPNGILSMDLVKSSVLNEEMRRKSQSSF 60

Query: 195 VRVQEVITEAKAGVTSLQMLSVTIAMKKA-------------------YKEVLSKIEKRH 254
           V+   ++TE +    S      + +  K+                   Y   L +  K H
Sbjct: 61  VQSDVLVTERRGRSKSKGSRGNSRSKSKSDRFANVECHYCHEKGHIKKYCRKLKRDSKNH 120

Query: 255 ----------------------------------------WVIDSGASVRATSKREFFAS 314
                                                   WVIDSGASV ATSK +FFAS
Sbjct: 121 KGKEKKNDDESDTDTIIVATENFYILSNGDVVNLAIQQSSWVIDSGASVNATSKGQFFAS 180

Query: 315 YTPGDFGSVRMGNDGSTNTVGIEDVSL-----------MMKVSAIPSTM----------- 374
           YTP DFGSVRMGNDGS N VGI DV L           +  +S I   +           
Sbjct: 181 YTPSDFGSVRMGNDGSANVVGIGDVHLNRNGSRLILKNVKHISDIRMNLISTGKLDDEGF 240

Query: 375 -------TYGSTKGSMVIPQGQKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISE 434
                   +  TKGS+VI +G KFSSLYYMDAKI++SDINTVNDE N+ELWHKRLSH+SE
Sbjct: 241 CNTFDNGIWKLTKGSIVIARGHKFSSLYYMDAKIIDSDINTVNDEVNIELWHKRLSHMSE 300

Query: 435 KGLKILTKK-----------NHLPDLKSTPLKRCLHCLAGKHTRVTFKSSQHLRKPNLLK 494
           KGLKILTKK           NHLPDLKSTPLKRC HCLAGK TRVTFKSSQH RKPN+L+
Sbjct: 301 KGLKILTKKNHLPDLKSTPLNHLPDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKPNVLE 360

Query: 495 LVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQAFKQFHAFVERKTGE 554
           LVHS+VCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQ FKQFHA VER+TGE
Sbjct: 361 LVHSNVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQVFKQFHASVERETGE 420

Query: 555 KLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPKTPQLNGIAERLNKTLVERVRCLLSKS 614
           KLKC+RTD+G EYCGPFDEYCRNH IRHQK PPKTPQLNGIAERLN+TLVERVRCLLS+S
Sbjct: 421 KLKCIRTDNGGEYCGPFDEYCRNHGIRHQKTPPKTPQLNGIAERLNRTLVERVRCLLSES 480

Query: 615 QLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSGKDISYSHLRVFGCKAFVHVPKDE 631
           QLPQSFWGEALNTVV+V NLTPCVPLGSEVPN IWSGKDISYSHLRVFGCKAFVHVPKDE
Sbjct: 481 QLPQSFWGEALNTVVHVLNLTPCVPLGSEVPNRIWSGKDISYSHLRVFGCKAFVHVPKDE 540

[Close]

BLAST of CSPI06G17410 vs. ExPASy TrEMBL
Match: A0A5D3BKF7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00180 PE=4 SV=1)

HSP 1 Score: 710.3 bits (1832), Expect = 7.6e-201
Identity = 385/580 (66.38%), Postives = 431/580 (74.31%), Query Frame = 0


Query: 98  KVCGFMRLWMMKLKYQDGAPMLDHL---NTFQGILNQLS-----RMNIKFEDEIHGLWVL 157
           KVCGFMRLW+     +D    L+H+      Q + N+L      +  IKFEDEI GLWVL
Sbjct: 86  KVCGFMRLWV-----EDN--FLNHICEETRVQTMWNKLESLCAPKTVIKFEDEICGLWVL 145

Query: 158 GTLPDSWKIFRTSLSNSASNGMLWLLKRGGGVKVRVQEVITEAKAGVTSLQMLSVTIAMK 217
           GTLPDSW+IFRTSLSNSA NG+L +      VK  V       K+  +S+Q   +    +
Sbjct: 146 GTLPDSWEIFRTSLSNSAPNGILSM----DLVKSSVLNEEMRRKSQSSSVQSDFLVTERR 205

Query: 218 KAYK----EVLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGI 277
              K     V   I++  WVIDSGASV ATSKREFFASYTPGDFGSVRMGNDG TN VGI
Sbjct: 206 GRSKSKGPRVNLAIQQSSWVIDSGASVHATSKREFFASYTPGDFGSVRMGNDGPTNVVGI 265

Query: 278 EDVSL---------MMKVSAIP------------------STMTYG---STKGSMVIPQG 337
            DV L         +  V  IP                  +T   G    TKGSMVI  G
Sbjct: 266 GDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIWKLTKGSMVIASG 325

Query: 338 QKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLK 397
           QKFSSLYYMDAKI++ DINTVNDEANVELWHKRLSH+SEKGLKILTKKNHL DLKSTPLK
Sbjct: 326 QKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKKNHLHDLKSTPLK 385

Query: 398 RCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKI 457
           RC HCLAGK TRVTFKSSQH RK N+L+LVHS+VCG MKTKSLGGALYFVTFTDDHSRKI
Sbjct: 386 RCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALYFVTFTDDHSRKI 445

Query: 458 WVYTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAP 517
           WVYTLKTKDQV   FKQFHA VER+TGEKLKC+RTD+G EYCGPFDEYCRNH IRHQK P
Sbjct: 446 WVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDEYCRNHGIRHQKTP 505

Query: 518 PKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPN 577
           PK+ QLNGIA+RLN+TLVERVRCLL++SQLPQSFWGEALNTV++V NLTPCVPLGSEVPN
Sbjct: 506 PKSSQLNGIAKRLNRTLVERVRCLLTESQLPQSFWGEALNTVIHVLNLTPCVPLGSEVPN 565

Query: 578 IIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKK 632
            IWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTK CVFLGYGQDEFGYR+YD  KKK
Sbjct: 566 RIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKPCVFLGYGQDEFGYRVYDRVKKK 625

[Close]

BLAST of CSPI06G17410 vs. ExPASy TrEMBL
Match: A0A5A7TFU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00580 PE=4 SV=1)

HSP 1 Score: 707.2 bits (1824), Expect = 6.4e-200
Identity = 384/580 (66.21%), Postives = 430/580 (74.14%), Query Frame = 0


Query: 98  KVCGFMRLWMMKLKYQDGAPMLDHL---NTFQGILNQLS-----RMNIKFEDEIHGLWVL 157
           KVCGFMRLW+     +D    L+H+      Q + N+L      +  IKFEDEI GLWVL
Sbjct: 86  KVCGFMRLWV-----EDN--FLNHICEETRVQTMWNKLESLCAPKTVIKFEDEICGLWVL 145

Query: 158 GTLPDSWKIFRTSLSNSASNGMLWLLKRGGGVKVRVQEVITEAKAGVTSLQMLSVTIAMK 217
           GTLPDSW+IFRTSLSNSA NG+L +      VK  V       K+  +S+Q   +    +
Sbjct: 146 GTLPDSWEIFRTSLSNSAPNGILSM----DLVKSSVLNEEMRRKSQSSSVQSDFLVTERR 205

Query: 218 KAYK----EVLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGI 277
              K     V   I++  WVIDSGASV ATSKREFFASYTPGDFGSVRMGNDG TN VGI
Sbjct: 206 GRSKSKGPRVNLVIQQSSWVIDSGASVHATSKREFFASYTPGDFGSVRMGNDGPTNVVGI 265

Query: 278 EDVSL---------MMKVSAIP------------------STMTYG---STKGSMVIPQG 337
            DV L         +  V  IP                  +T   G    TKGSMVI  G
Sbjct: 266 GDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIWKLTKGSMVIASG 325

Query: 338 QKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLK 397
           QKFSSLYYMDAKI++ DINTVNDEANVELWHKRLSH+SEKGLKILTKKNHL DLKSTPLK
Sbjct: 326 QKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKKNHLHDLKSTPLK 385

Query: 398 RCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKI 457
           RC HCLAGK TRVTFKSSQH RK N+L+LVHS+VCG MKTKSLGGALYFVTFTDDHSRKI
Sbjct: 386 RCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALYFVTFTDDHSRKI 445

Query: 458 WVYTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAP 517
           WVYTLKTKDQV   FKQFHA VER+TGEKLKC+RTD+G EYCGPFDEYCRNH IRHQK P
Sbjct: 446 WVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDEYCRNHGIRHQKTP 505

Query: 518 PKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPN 577
           PK+ QLNGIA+RLN+TLVERVRCLL++SQLPQSFWGEALNTV++V NLTPCVPLGSEVPN
Sbjct: 506 PKSSQLNGIAKRLNRTLVERVRCLLTESQLPQSFWGEALNTVIHVLNLTPCVPLGSEVPN 565

Query: 578 IIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKK 632
            IWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTK CVFLGYGQDEFGYR+Y   KKK
Sbjct: 566 RIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKPCVFLGYGQDEFGYRVYHRVKKK 625

[Close]

BLAST of CSPI06G17410 vs. ExPASy TrEMBL
Match: A5C3L0 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_007384 PE=4 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 7.4e-196
Identity = 377/775 (48.65%), Postives = 459/775 (59.23%), Query Frame = 0


Query: 65  IKDYSEDFDFGPWFFTPHKPDNKTDKEWELCHRKVCGFMRLW------------------ 124
           +KDY     + P  F   +P+NK D EW L HR+VCG++R W                  
Sbjct: 7   VKDY-----YXP-VFASERPENKXDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHARSL 66

Query: 125 ----------------------MMKLKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 184
                                 MM LKYQDG PM DHLNTFQGI+NQL  MNIKFE+E+ 
Sbjct: 67  WNKLEQLYARKTGNNKLLLIKKMMSLKYQDGTPMTDHLNTFQGIINQLVGMNIKFEEEVQ 126

Query: 185 GLWVLGTLPDSWKIFRTSLSNSASNGML------------WLLKRGGGVKVRVQEVITEA 244
           GLW+LGTLP+ W+ FRTSLSNSA +G++             + ++  G   +   ++TE 
Sbjct: 127 GLWLLGTLPNLWETFRTSLSNSALDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVTEK 186

Query: 245 KA---------------------------------------------------------G 304
           K                                                          G
Sbjct: 187 KGKSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNG 246

Query: 305 VTSLQMLSVTIAMKKAYKE--VLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVR 364
               Q+ + T      Y    V    ++  WVIDSGAS+ AT +++FF SYT GDFGSVR
Sbjct: 247 GEDDQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVR 306

Query: 365 MGNDGSTNTVGIEDVSLMMKVSAIPSTMTYGST-KGSMVIPQGQKFSSLYYMDAKIMESD 424
           MGNDGS   +G+ D SLMMK SA PS +  GS+ +GSMVI +G K SSLY M A++++S 
Sbjct: 307 MGNDGSAKAIGMGDESLMMKGSATPSVIVSGSSLRGSMVIAKGNKSSSLYLMQARVIDSS 366

Query: 425 INTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLKRCLHCLAGKHTRVTFKS 484
           IN V+D++  ELWH RL H+SEKGL IL K N L  +K   LKRC HCLAGK TRV FK+
Sbjct: 367 INAVDDDSTFELWHNRLGHMSEKGLMILAKNNLLSGMKKGSLKRCAHCLAGKQTRVAFKT 426

Query: 485 SQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQAFKQ 544
            +H RKP +  LV+SDVCGPMKTK+LGG+LYFVTF DDHSRKIWVYTLKTKDQVL  FKQ
Sbjct: 427 LRHTRKPGMFDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQ 486

Query: 545 FHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPKTPQLNGIAERLNKTL 604
           FHA VER++GEKLKC+RTD+G EY GPFDEYCR HDIRHQK PPKTPQLNG+AER+N+TL
Sbjct: 487 FHALVERQSGEKLKCIRTDNGGEYSGPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTL 546

Query: 605 VERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSGKDISYSHLRVFG 664
           VERVRCLLS+SQLP+SFW EALNTVV+V NLTPCVPL  +V + IWS  +ISY HLRVFG
Sbjct: 547 VERVRCLLSQSQLPRSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFG 606

Query: 665 CKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDV---------- 668
           CKAFVH+PKDERSKLD KT+ CVF+GYGQDE GYR YDP +KKL+RSRDV          
Sbjct: 607 CKAFVHIPKDERSKLDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQD 666

[Close]

BLAST of CSPI06G17410 vs. ExPASy TrEMBL
Match: A0A438HN89 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3233 PE=4 SV=1)

HSP 1 Score: 684.9 bits (1766), Expect = 3.4e-193
Identity = 379/790 (47.97%), Postives = 457/790 (57.85%), Query Frame = 0


Query: 79  FTPHKPDNKTDKEWELCHRKVCGFMRLW-------------------------------- 138
           F   +P+NKTD EW L HR+VCGF+R W                                
Sbjct: 15  FASERPENKTDAEWNLLHRQVCGFIRQWVDDNVLNHVSEEKHARSLWNKLEQLYARKTGN 74

Query: 139 --------MMKLKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIHGLWVLGTLPDSWKI 198
                   MM LKYQDG P+ DHLNTFQGI+NQL+ MNIKFE+E+ GLW+LGTLPDSW+ 
Sbjct: 75  NKLFLIKKMMSLKYQDGTPITDHLNTFQGIINQLAGMNIKFEEEVQGLWLLGTLPDSWET 134

Query: 199 FRTSLSNSASNG----------------------------MLWLLKRG------------ 258
           FRTSLSNSA +G                            +L + KRG            
Sbjct: 135 FRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSSVLVIEKRGRSKSRGPKNRDR 194

Query: 259 -------------------GGVKVRVQEVITEAKAGVTSL----------QMLSVTIAMK 318
                              G +K   +++  + K G              Q+ + T    
Sbjct: 195 SKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTTSDFL 254

Query: 319 KAYKE--VLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGIED 378
             Y    V    ++  WVIDSGAS+ AT +++FF SYT GDFGSVRMGNDGS   + + D
Sbjct: 255 IVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAISMRD 314

Query: 379 VSL---------MMKVSAIPS---------------------TMTYGSTKGSMVIPQGQK 438
           V L         +  V  IP                         +  T+GSMVI +G K
Sbjct: 315 VRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNK 374

Query: 439 FSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLKRC 498
            SSLY M A++++S IN V+D++  ELWH RL H+SEKGL IL KKN L  +K   LKRC
Sbjct: 375 SSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSSMKKGSLKRC 434

Query: 499 LHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWV 558
            HCLAGK TRV FK+ +H RKP +L LV+SDVCGPMKTK+LGG+LYFVTF DDHSRKIWV
Sbjct: 435 AHCLAGKQTRVAFKTLRHTRKPGMLDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWV 494

Query: 559 YTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPK 618
           YTLKTKDQVL  FKQFHA VER++GEKLKC+RTD+G EY GPFDEYCR H IRHQK PPK
Sbjct: 495 YTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFDEYCRQHGIRHQKTPPK 554

Query: 619 TPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNII 668
           TPQLNG+AER+N+TLVERVRCLLS+SQLP+SFWGEALNTVV+V NLTPCVPL  +VP+ I
Sbjct: 555 TPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGEALNTVVHVLNLTPCVPLEFDVPDRI 614

[Close]

BLAST of CSPI06G17410 vs. NCBI nr
Match: KAA0047570.1 (putative retrotransposon [Cucumis melo var. makuwa] >TYK14964.1 putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 710.3 bits (1832), Expect = 1.6e-200
Identity = 391/646 (60.53%), Postives = 426/646 (65.94%), Query Frame = 0


Query: 135 MNIKFEDEIHGLWVLGTLPDSWKIFRTSLSNSASNGML------------WLLKRGGGVK 194
           MNIKFE+EIHGLWVLG L DSW+IFRTSLSNSA NG+L             + ++     
Sbjct: 1   MNIKFEEEIHGLWVLGKLSDSWEIFRTSLSNSAPNGILSMDLVKSSVLNEEMRRKSQSSF 60

Query: 195 VRVQEVITEAKAGVTSLQMLSVTIAMKKA-------------------YKEVLSKIEKRH 254
           V+   ++TE +    S      + +  K+                   Y   L +  K H
Sbjct: 61  VQSDVLVTERRGRSKSKGSRGNSRSKSKSDRFANVECHYCHEKGHIKKYCRKLKRDSKNH 120

Query: 255 ----------------------------------------WVIDSGASVRATSKREFFAS 314
                                                   WVIDSGASV ATSK +FFAS
Sbjct: 121 KGKEKKNDDESDTDTIIVATENFYILSNGDVVNLAIQQSSWVIDSGASVNATSKGQFFAS 180

Query: 315 YTPGDFGSVRMGNDGSTNTVGIEDVSL-----------MMKVSAIPSTM----------- 374
           YTP DFGSVRMGNDGS N VGI DV L           +  +S I   +           
Sbjct: 181 YTPSDFGSVRMGNDGSANVVGIGDVHLNRNGSRLILKNVKHISDIRMNLISTGKLDDEGF 240

Query: 375 -------TYGSTKGSMVIPQGQKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISE 434
                   +  TKGS+VI +G KFSSLYYMDAKI++SDINTVNDE N+ELWHKRLSH+SE
Sbjct: 241 CNTFDNGIWKLTKGSIVIARGHKFSSLYYMDAKIIDSDINTVNDEVNIELWHKRLSHMSE 300

Query: 435 KGLKILTKK-----------NHLPDLKSTPLKRCLHCLAGKHTRVTFKSSQHLRKPNLLK 494
           KGLKILTKK           NHLPDLKSTPLKRC HCLAGK TRVTFKSSQH RKPN+L+
Sbjct: 301 KGLKILTKKNHLPDLKSTPLNHLPDLKSTPLKRCPHCLAGKQTRVTFKSSQHSRKPNVLE 360

Query: 495 LVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQAFKQFHAFVERKTGE 554
           LVHS+VCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQ FKQFHA VER+TGE
Sbjct: 361 LVHSNVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQVFKQFHASVERETGE 420

Query: 555 KLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPKTPQLNGIAERLNKTLVERVRCLLSKS 614
           KLKC+RTD+G EYCGPFDEYCRNH IRHQK PPKTPQLNGIAERLN+TLVERVRCLLS+S
Sbjct: 421 KLKCIRTDNGGEYCGPFDEYCRNHGIRHQKTPPKTPQLNGIAERLNRTLVERVRCLLSES 480

Query: 615 QLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSGKDISYSHLRVFGCKAFVHVPKDE 631
           QLPQSFWGEALNTVV+V NLTPCVPLGSEVPN IWSGKDISYSHLRVFGCKAFVHVPKDE
Sbjct: 481 QLPQSFWGEALNTVVHVLNLTPCVPLGSEVPNRIWSGKDISYSHLRVFGCKAFVHVPKDE 540

[Close]

BLAST of CSPI06G17410 vs. NCBI nr
Match: TYJ98688.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 710.3 bits (1832), Expect = 1.6e-200
Identity = 385/580 (66.38%), Postives = 431/580 (74.31%), Query Frame = 0


Query: 98  KVCGFMRLWMMKLKYQDGAPMLDHL---NTFQGILNQLS-----RMNIKFEDEIHGLWVL 157
           KVCGFMRLW+     +D    L+H+      Q + N+L      +  IKFEDEI GLWVL
Sbjct: 86  KVCGFMRLWV-----EDN--FLNHICEETRVQTMWNKLESLCAPKTVIKFEDEICGLWVL 145

Query: 158 GTLPDSWKIFRTSLSNSASNGMLWLLKRGGGVKVRVQEVITEAKAGVTSLQMLSVTIAMK 217
           GTLPDSW+IFRTSLSNSA NG+L +      VK  V       K+  +S+Q   +    +
Sbjct: 146 GTLPDSWEIFRTSLSNSAPNGILSM----DLVKSSVLNEEMRRKSQSSSVQSDFLVTERR 205

Query: 218 KAYK----EVLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGI 277
              K     V   I++  WVIDSGASV ATSKREFFASYTPGDFGSVRMGNDG TN VGI
Sbjct: 206 GRSKSKGPRVNLAIQQSSWVIDSGASVHATSKREFFASYTPGDFGSVRMGNDGPTNVVGI 265

Query: 278 EDVSL---------MMKVSAIP------------------STMTYG---STKGSMVIPQG 337
            DV L         +  V  IP                  +T   G    TKGSMVI  G
Sbjct: 266 GDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIWKLTKGSMVIASG 325

Query: 338 QKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLK 397
           QKFSSLYYMDAKI++ DINTVNDEANVELWHKRLSH+SEKGLKILTKKNHL DLKSTPLK
Sbjct: 326 QKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKKNHLHDLKSTPLK 385

Query: 398 RCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKI 457
           RC HCLAGK TRVTFKSSQH RK N+L+LVHS+VCG MKTKSLGGALYFVTFTDDHSRKI
Sbjct: 386 RCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALYFVTFTDDHSRKI 445

Query: 458 WVYTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAP 517
           WVYTLKTKDQV   FKQFHA VER+TGEKLKC+RTD+G EYCGPFDEYCRNH IRHQK P
Sbjct: 446 WVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDEYCRNHGIRHQKTP 505

Query: 518 PKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPN 577
           PK+ QLNGIA+RLN+TLVERVRCLL++SQLPQSFWGEALNTV++V NLTPCVPLGSEVPN
Sbjct: 506 PKSSQLNGIAKRLNRTLVERVRCLLTESQLPQSFWGEALNTVIHVLNLTPCVPLGSEVPN 565

Query: 578 IIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKK 632
            IWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTK CVFLGYGQDEFGYR+YD  KKK
Sbjct: 566 RIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKPCVFLGYGQDEFGYRVYDRVKKK 625

[Close]

BLAST of CSPI06G17410 vs. NCBI nr
Match: KAA0040427.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 707.2 bits (1824), Expect = 1.3e-199
Identity = 384/580 (66.21%), Postives = 430/580 (74.14%), Query Frame = 0


Query: 98  KVCGFMRLWMMKLKYQDGAPMLDHL---NTFQGILNQLS-----RMNIKFEDEIHGLWVL 157
           KVCGFMRLW+     +D    L+H+      Q + N+L      +  IKFEDEI GLWVL
Sbjct: 86  KVCGFMRLWV-----EDN--FLNHICEETRVQTMWNKLESLCAPKTVIKFEDEICGLWVL 145

Query: 158 GTLPDSWKIFRTSLSNSASNGMLWLLKRGGGVKVRVQEVITEAKAGVTSLQMLSVTIAMK 217
           GTLPDSW+IFRTSLSNSA NG+L +      VK  V       K+  +S+Q   +    +
Sbjct: 146 GTLPDSWEIFRTSLSNSAPNGILSM----DLVKSSVLNEEMRRKSQSSSVQSDFLVTERR 205

Query: 218 KAYK----EVLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGI 277
              K     V   I++  WVIDSGASV ATSKREFFASYTPGDFGSVRMGNDG TN VGI
Sbjct: 206 GRSKSKGPRVNLVIQQSSWVIDSGASVHATSKREFFASYTPGDFGSVRMGNDGPTNVVGI 265

Query: 278 EDVSL---------MMKVSAIP------------------STMTYG---STKGSMVIPQG 337
            DV L         +  V  IP                  +T   G    TKGSMVI  G
Sbjct: 266 GDVHLKNRNGSRLILKNVKHIPDIHMNLISTGKLDDEGFCNTFDNGIWKLTKGSMVIASG 325

Query: 338 QKFSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLK 397
           QKFSSLYYMDAKI++ DINTVNDEANVELWHKRLSH+SEKGLKILTKKNHL DLKSTPLK
Sbjct: 326 QKFSSLYYMDAKIIDYDINTVNDEANVELWHKRLSHMSEKGLKILTKKNHLHDLKSTPLK 385

Query: 398 RCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKI 457
           RC HCLAGK TRVTFKSSQH RK N+L+LVHS+VCG MKTKSLGGALYFVTFTDDHSRKI
Sbjct: 386 RCPHCLAGKQTRVTFKSSQHSRKSNVLELVHSNVCGLMKTKSLGGALYFVTFTDDHSRKI 445

Query: 458 WVYTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAP 517
           WVYTLKTKDQV   FKQFHA VER+TGEKLKC+RTD+G EYCGPFDEYCRNH IRHQK P
Sbjct: 446 WVYTLKTKDQV---FKQFHASVERETGEKLKCIRTDNGGEYCGPFDEYCRNHGIRHQKTP 505

Query: 518 PKTPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPN 577
           PK+ QLNGIA+RLN+TLVERVRCLL++SQLPQSFWGEALNTV++V NLTPCVPLGSEVPN
Sbjct: 506 PKSSQLNGIAKRLNRTLVERVRCLLTESQLPQSFWGEALNTVIHVLNLTPCVPLGSEVPN 565

Query: 578 IIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKK 632
            IWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTK CVFLGYGQDEFGYR+Y   KKK
Sbjct: 566 RIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKPCVFLGYGQDEFGYRVYHRVKKK 625

[Close]

BLAST of CSPI06G17410 vs. NCBI nr
Match: CAN66323.1 (hypothetical protein VITISV_007384 [Vitis vinifera])

HSP 1 Score: 693.7 bits (1789), Expect = 1.5e-195
Identity = 377/775 (48.65%), Postives = 459/775 (59.23%), Query Frame = 0


Query: 65  IKDYSEDFDFGPWFFTPHKPDNKTDKEWELCHRKVCGFMRLW------------------ 124
           +KDY     + P  F   +P+NK D EW L HR+VCG++R W                  
Sbjct: 7   VKDY-----YXP-VFASERPENKXDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHARSL 66

Query: 125 ----------------------MMKLKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIH 184
                                 MM LKYQDG PM DHLNTFQGI+NQL  MNIKFE+E+ 
Sbjct: 67  WNKLEQLYARKTGNNKLLLIKKMMSLKYQDGTPMTDHLNTFQGIINQLVGMNIKFEEEVQ 126

Query: 185 GLWVLGTLPDSWKIFRTSLSNSASNGML------------WLLKRGGGVKVRVQEVITEA 244
           GLW+LGTLP+ W+ FRTSLSNSA +G++             + ++  G   +   ++TE 
Sbjct: 127 GLWLLGTLPNLWETFRTSLSNSALDGIMNMDLVKSCVLNEEMRRKSQGSSSQSNVLVTEK 186

Query: 245 KA---------------------------------------------------------G 304
           K                                                          G
Sbjct: 187 KGKSKSRGPKNRDRSKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNG 246

Query: 305 VTSLQMLSVTIAMKKAYKE--VLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVR 364
               Q+ + T      Y    V    ++  WVIDSGAS+ AT +++FF SYT GDFGSVR
Sbjct: 247 GEDDQVATTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVR 306

Query: 365 MGNDGSTNTVGIEDVSLMMKVSAIPSTMTYGST-KGSMVIPQGQKFSSLYYMDAKIMESD 424
           MGNDGS   +G+ D SLMMK SA PS +  GS+ +GSMVI +G K SSLY M A++++S 
Sbjct: 307 MGNDGSAKAIGMGDESLMMKGSATPSVIVSGSSLRGSMVIAKGNKSSSLYLMQARVIDSS 366

Query: 425 INTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLKRCLHCLAGKHTRVTFKS 484
           IN V+D++  ELWH RL H+SEKGL IL K N L  +K   LKRC HCLAGK TRV FK+
Sbjct: 367 INAVDDDSTFELWHNRLGHMSEKGLMILAKNNLLSGMKKGSLKRCAHCLAGKQTRVAFKT 426

Query: 485 SQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWVYTLKTKDQVLQAFKQ 544
            +H RKP +  LV+SDVCGPMKTK+LGG+LYFVTF DDHSRKIWVYTLKTKDQVL  FKQ
Sbjct: 427 LRHTRKPGMFDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWVYTLKTKDQVLDVFKQ 486

Query: 545 FHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPKTPQLNGIAERLNKTL 604
           FHA VER++GEKLKC+RTD+G EY GPFDEYCR HDIRHQK PPKTPQLNG+AER+N+TL
Sbjct: 487 FHALVERQSGEKLKCIRTDNGGEYSGPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTL 546

Query: 605 VERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSGKDISYSHLRVFG 664
           VERVRCLLS+SQLP+SFW EALNTVV+V NLTPCVPL  +V + IWS  +ISY HLRVFG
Sbjct: 547 VERVRCLLSQSQLPRSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFG 606

Query: 665 CKAFVHVPKDERSKLDAKTKACVFLGYGQDEFGYRLYDPTKKKLIRSRDV---------- 668
           CKAFVH+PKDERSKLD KT+ CVF+GYGQDE GYR YDP +KKL+RSRDV          
Sbjct: 607 CKAFVHIPKDERSKLDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQD 666

[Close]

BLAST of CSPI06G17410 vs. NCBI nr
Match: RVW85908.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 684.9 bits (1766), Expect = 7.1e-193
Identity = 379/790 (47.97%), Postives = 457/790 (57.85%), Query Frame = 0


Query: 79  FTPHKPDNKTDKEWELCHRKVCGFMRLW-------------------------------- 138
           F   +P+NKTD EW L HR+VCGF+R W                                
Sbjct: 15  FASERPENKTDAEWNLLHRQVCGFIRQWVDDNVLNHVSEEKHARSLWNKLEQLYARKTGN 74

Query: 139 --------MMKLKYQDGAPMLDHLNTFQGILNQLSRMNIKFEDEIHGLWVLGTLPDSWKI 198
                   MM LKYQDG P+ DHLNTFQGI+NQL+ MNIKFE+E+ GLW+LGTLPDSW+ 
Sbjct: 75  NKLFLIKKMMSLKYQDGTPITDHLNTFQGIINQLAGMNIKFEEEVQGLWLLGTLPDSWET 134

Query: 199 FRTSLSNSASNG----------------------------MLWLLKRG------------ 258
           FRTSLSNSA +G                            +L + KRG            
Sbjct: 135 FRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQGSSSQSSVLVIEKRGRSKSRGPKNRDR 194

Query: 259 -------------------GGVKVRVQEVITEAKAGVTSL----------QMLSVTIAMK 318
                              G +K   +++  + K G              Q+ + T    
Sbjct: 195 SKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTTSDFL 254

Query: 319 KAYKE--VLSKIEKRHWVIDSGASVRATSKREFFASYTPGDFGSVRMGNDGSTNTVGIED 378
             Y    V    ++  WVIDSGAS+ AT +++FF SYT GDFGSVRMGNDGS   + + D
Sbjct: 255 IVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAISMRD 314

Query: 379 VSL---------MMKVSAIPS---------------------TMTYGSTKGSMVIPQGQK 438
           V L         +  V  IP                         +  T+GSMVI +G K
Sbjct: 315 VRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNK 374

Query: 439 FSSLYYMDAKIMESDINTVNDEANVELWHKRLSHISEKGLKILTKKNHLPDLKSTPLKRC 498
            SSLY M A++++S IN V+D++  ELWH RL H+SEKGL IL KKN L  +K   LKRC
Sbjct: 375 SSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSSMKKGSLKRC 434

Query: 499 LHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCGPMKTKSLGGALYFVTFTDDHSRKIWV 558
            HCLAGK TRV FK+ +H RKP +L LV+SDVCGPMKTK+LGG+LYFVTF DDHSRKIWV
Sbjct: 435 AHCLAGKQTRVAFKTLRHTRKPGMLDLVYSDVCGPMKTKTLGGSLYFVTFIDDHSRKIWV 494

Query: 559 YTLKTKDQVLQAFKQFHAFVERKTGEKLKCVRTDSGCEYCGPFDEYCRNHDIRHQKAPPK 618
           YTLKTKDQVL  FKQFHA VER++GEKLKC+RTD+G EY GPFDEYCR H IRHQK PPK
Sbjct: 495 YTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNGGEYSGPFDEYCRQHGIRHQKTPPK 554

Query: 619 TPQLNGIAERLNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNII 668
           TPQLNG+AER+N+TLVERVRCLLS+SQLP+SFWGEALNTVV+V NLTPCVPL  +VP+ I
Sbjct: 555 TPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGEALNTVVHVLNLTPCVPLEFDVPDRI 614

[Close]

BLAST of CSPI06G17410 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 287 KGSMVIPQGQKFSSLYYMDAKIMESDIN---TVNDEANVELWHKRLSHISEKGLKILTKK 346
           KG   I +G +  SLY +   +   + N   T  DE    LWH RL+H+S++G+++L KK
Sbjct: 33  KGCRTILKGNRHDSLYILQGSVETGESNLAETAKDE--TRLWHSRLAHMSQRGMELLVKK 92

Query: 347 NHLPDLKSTPLKRCLHCLAGKHTRVTFKSSQHLRKPNLLKLVHSDVCG 392
             L   K + LK C  C+ GK  RV F + QH  K N L  VHSD+ G
Sbjct: 93  GFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK-NPLDYVHSDLWG 137

[Close]

BLAST of CSPI06G17410 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-11
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 488 LNKTLVERVRCLLSKSQLPQSFWGEALNTVVYVFNLTPCVPLGSEVPNIIWSGKDISYSH 547
           +N+T++E+VR +L +  LP++F  +A NT V++ N  P   +   VP+ +W     +YS+
Sbjct: 1   MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 548 LRVFGCKAFVHVPKDERSKLDAKTK 573
           LR FGC A++H    +  KL  + K
Sbjct: 61  LRRFGCVAYIHC---DEGKLKPRAK 82

The following BLAST results are available for this feature:

BLAST of CSPI06G17410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.3e-120	37.84	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.8e-45	35.09	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	7.0e-34	27.25	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.5e-33	27.25	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q12337	1.2e-20	25.60	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of CSPI06G17410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVK2	7.6e-201	60.53	Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BKF7	7.6e-201	66.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TFU1	6.4e-200	66.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A5C3L0	7.4e-196	48.65	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438HN89	3.4e-193	47.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of CSPI06G17410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047570.1	1.6e-200	60.53	putative retrotransposon [Cucumis melo var. makuwa] >TYK14964.1 putative retrotr...	[more]
TYJ98688.1	1.6e-200	66.38	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0040427.1	1.3e-199	66.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
CAN66323.1	1.5e-195	48.65	hypothetical protein VITISV_007384 [Vitis vinifera]	[more]
RVW85908.1	7.1e-193	47.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of CSPI06G17410 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00300.1	1.1e-13	39.81	Gag-Pol-related retrotransposon family protein	[more]
ATMG00710.1	1.7e-11	35.29	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 374..561 e-value: 4.7E-35 score: 122.7
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 301..365 e-value: 3.3E-12 score: 46.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 107..168 e-value: 8.4E-10 score: 38.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 647..667
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 326..641
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 383..479 e-value: 1.5E-11 score: 44.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 375..542 score: 21.518564
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 381..534

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G17410.1	CSPI06G17410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding