Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACTGTTTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAACCTGTTTGTAAGAAATTGAAGAGGTCATTTCACTGCTGCTCAAAGTTCCACAAACCCAAGCTTCGCACCTCACATTGAGGAAGCTAATGGTTTAGTTGTTGAAAGGAATATCTGTGACTTTTTCGAGTTCTCACCCGGGTTTAAGCAGTAGGGCTTCCTGTGAATATCAATTACCGGAAATGTAGCTGATGTGAAGCAGCAGGAAGAATTGCGAGAGAAAAAACAGAGTTCTTGTTTGGTCCATCCTAAAAGAATGGAGAAGCATACACTTGTTTGGTTGCCTAGACGCCGATGCAAATCCTTATGCGTTGAAGGTTACGTATAGGTTCGGAATGTCCAAACAAAAAGACAACAAACCCCAAAAGTAAACGAATTACAGACAGATTTCAGTTGGGTCAAACCCAAAACCATTGAGTTTTGAACCAATTTTAGTTTCGACGACTTTGCGAGGAAATTGGAAGTTCTCAGGTCAGTCTAGTAAGTCAATGTTTCTATACCTAATATTCAAGTGGGGCTGGGAAGAAGAAGAACAGATGTTTTCCTGTTTTCTTTTTCCCTCATTTGATTATGATTTCTAGATAAAAAAAGGGGACACCCTAGTATTTTACTTGGTTGCGTATGAACAAATTTGTTTCTTCTAACCGCTGATTATTAGATTATTTAGAAATCCAATTATTTCTACTGTTTATTTGATTGCTATTCAAAGGATAAAACCATCCTATTCTATGAATCCTATTAAATTTCTATATTCAACTGCTTGAAAGAACAGGAACCATGACCTTCGGGTGGAATTGGTCATATCTTCGTGTAATCTAACAGTCTTTGGAATTTCAATAATTTTGCCAACAACCCTTAAATCTTTTTCTGTAAATTATTGAACCGGTCAACTAACCCATCTGTTCATCTTATGAAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGCTGTGGGTCTCCACGGTTAGATTTCACTACTTGCCCTGTGTTCTTAAATGATATTATCATCTTGATTCTTTGATATTTTTCAAGTTTCTGCTGTATCTTTATGAACAAATGTCAAAATGTTTTGGTAATAAAGAAGAATAAAGCAATAATAATTCTTTTTGGTAGTCAAATAAAACTCTGTATCATATTTCAACTTTTACTTTTCTCCTACTCCTCCTATCTATCTATCTACCCTTTGGGTTTATTTTACATAAGTATAACATGGAGTAAACCGTGTCATATTCATTAAGGCAAAACCTGTAAGTTTCTTATTATCTCTAATATTTAAACGAAACTTGTCTTCTATTTCATCTCCAGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCCTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAA
mRNA sequence
ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACTGTTTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAACCTGTTTGTAAGAAATTGAAGAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGCTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCCTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAA
Coding sequence (CDS)
ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACTGTTTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAACCTGTTTGTAAGAAATTGAAGAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAGGCGAAGAGACTTGTGCTGGGACCAAGGGGACTAGGATTCTCCAATTTTGGGTGCTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCATATCCTGTGAAAATTCGTTAGCCTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTATTGCTATTTAA
Protein sequence
MLRLTIHGRLENWHCFRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCENSLASERKPHLCSFLLPIAI*
Homology
BLAST of CSPI06G14480 vs. ExPASy TrEMBL
Match:
A0A0A0KCA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40
Identity = 81/108 (75.00%), Postives = 83/108 (76.85%), Query Frame = 0
Query: 1 MLRLTIHGRLENWHCFRQTCGCEQLLNFPAMENCLVGSHGMAVQPVC------------- 60
MLRLTIHGRLENWHC RQTCGCEQLLNFPAMENCLVGSHGMAVQPV
Sbjct: 22 MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVYADANPYALKVTYR 81
Query: 61 --------KKLKRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 88
K ++PFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 82 FGMSKQKDNKPQKPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 129
BLAST of CSPI06G14480 vs. NCBI nr
Match:
KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])
HSP 1 Score: 188.0 bits (476), Expect = 4.9e-44
Identity = 86/99 (86.87%), Postives = 86/99 (86.87%), Query Frame = 0
Query: 1 MLRLTIHGRLENWHCFRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLK--------- 60
MLRLTIHGRLENWHC RQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLK
Sbjct: 1 MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL 60
Query: 61 ---RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 88
RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 61 EVLRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 99
BLAST of CSPI06G14480 vs. NCBI nr
Match:
KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 0
Query: 52 RPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCENSLASERKPHLC 111
+ +PEVE MEFGPG+ET +GTK TRI WVLWVSTEPPPSEP+I+CE SLA+E KPHL
Sbjct: 2 KTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSLAAEGKPHLF 61
Query: 112 SFL 115
FL
Sbjct: 62 PFL 64
BLAST of CSPI06G14480 vs. NCBI nr
Match:
KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0
Query: 54 FPEVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCENS 102
+PEVE MEFGPG+ET +GTK TRI WVLWVSTEPPPSEP+I+CE S
Sbjct: 30 YPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETS 77
BLAST of CSPI06G14480 vs. NCBI nr
Match:
XP_031743531.1 (uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.1 uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus])
HSP 1 Score: 67.0 bits (162), Expect = 1.3e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0
Query: 60 MEFGPGEETCAGTKGTRILQFWVLWVST 88
MEFGPGEETCAGTKGTRILQFWVLWVST
Sbjct: 1 MEFGPGEETCAGTKGTRILQFWVLWVST 28
BLAST of CSPI06G14480 vs. NCBI nr
Match:
KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])
HSP 1 Score: 65.9 bits (159), Expect = 2.8e-07
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 0
Query: 56 EVEDMEFGPGEETCAGTKGTRILQFWVLWVSTEPPPSEPAISCE 100
E+E MEFGPG E + T TRI Q WVLW S EPPPS+PAI+CE
Sbjct: 56 EIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAITCE 99
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KCA1 | 7.9e-40 | 75.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN47177.2 | 4.9e-44 | 86.87 | hypothetical protein Csa_020828 [Cucumis sativus] | [more] |
KAG7010553.1 | 2.3e-17 | 71.43 | hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
KAG6570707.1 | 3.8e-12 | 75.00 | Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_031743531.1 | 1.3e-07 | 100.00 | uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.... | [more] |
KAE8649779.1 | 2.8e-07 | 65.91 | hypothetical protein Csa_012265 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |