CSPI05G18540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G18540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	survival of motor neuron-related-splicing factor 30
Location	Chr5: 19560405 .. 19565586 (+)
RNA-Seq Expression	CSPI05G18540
Synteny	CSPI05G18540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTGGTTTCAATTCAGGATCGAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGCATTTATAGGCACTCCAACATCATAAAACCAACGAGAAATTCTTTGAATGGTTTGCTCCCTCTTCTCCTTTTTGTATGCTTCACTCATCATGCTTGTTTTCCCTTTCCTTTGTCATTCTTTCAATTTTGAACCACAACTTCTGGGTTAGGCGTAAAATATACATCTATTGGACCTTTTGTCCTGGCTTCTTTGAACATGGTGCCACTCTTTTATTTGGTTTACTTACATACACTTCTTCATTCTCAATACCATAAGCGTTGTCAATATCATCAATCAAATTTCTTTACTTTTTAATCTCCTTTTTCTTAAGGCCTTAATTTCTTCCTTCATGTGATCAAGGAATTTTCTACAAACAGTGACATTTCTATAACCACCAACTAGGTGTTTTTTCATTCTCCGAACTTCTCATTTAGTTGCTTTTGAACAAAATTCCACACTAATGTATTAACATCTTGCTCATTTTGCAATCAAGCGTATTTCCATGCTGGATCTTTTCTTAAACTGTCCTCAGCCATCTGATTATTTAGAAAATTAAACTCTGTTAGAAATTAACGTAAGAAATTGATCACAAAAGTTAGGAGCTGGGACATACCAAAAATTTGATAAAGATTGAACTTCAAACGCTACTGTTTTGGAGAGTTGTCAACTAGAAGAGATGAAGTTGAAGCCTTAAAGGTTGCTTTATTTTACTCTTTTCTGCTTTTGAAGACAACTCAAAGAATAGACTTCGGAAAAGGAGCCGAGGAGGTGTTCTGTTTTTTTTTTGTTAAGGAGGAGGAGAAGGAGAAGTTGAAGAGCGTTCGGTTTTTCTTAAAGAGCCGAGGAGGTGTTTTGTTTTTTCTTTTCTTGAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAGGAGACGTTCATACCGTTTTTTGAAATAGAGGTTCAGCTTGTACTTTAAATTAATCTTAGCCATCGGTATAAATTGTATAATGATGCTTTATTTCGAATTAGGTTAAGAAAAAAATAAATATATTATATTTTATAATAAACGGTAGCCAAAATTTTGTTTTAAGGGATTTGTAAAAGAAAAAAAAAAAGCTCAAAGATGCGCTTTGCAGAAGGCACGCTCCTTCCTCAATGCCTCACCTATCCAAGGCGAGGCGCCAATGTTGTGCCTTGGGCCTAGGTGTGTGCTAGAGTATGCCTTTCAAAACACTGCAAGGTAGAGAGAGGGACCATAATGAGGAATGGGATTTGATTAGATTTCATGTGTCTATTTGGGCTTCAGTTTCAAAGACCTTTTGAAACTATTCCTTAGGACATTTTAATTAGCTGGAATCCCTTTTTATAGGTGGGGTGCTTTGTTGGGCTGGTTTTTCTTTTTTGTATATCATTGTATTCTTTCATTCTTTCTCAAAGAAAGTTGTTTCTATAAAAAAAAAGCAGAGAATTCTCTCCCAAATTTCCCAATTAGAAAATCCCACATAAAACTCTTTACACACTTCCTCTCAACCCACACCTTTCTATTTATAGCAAAAAACCCTAACAAACTCATTATTGAATTACTATTTTTCCCTTTCTACTAACCAATATTAATATTCTCCTAATAATCCTAATATTTCGTTACTAGGGGCCTTACCGAGATGTTTAGTGATCTAATATTCTATGTTCTTGGTATGCAGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGTGAGGATGGGGAGTGGTGAGTAAAAATAAAAGGAGAAAATTTACCATCTTACTTAAACAGTATCTGTTCCTTAGGTTGTACAAGGGTTGTAAAAAAGGAAGTTTATTCTCCAATAGTAAAAGAGTATCTGTTCGGTAGTTAGAAAAGAGATGCTGAAGATGTGTGCTTAAAGTTTACTAAGGACTCAAGTGCGAAAATAATAAGTTTCTGCATGGAATTTTTTCTTTAATAATTTTTTTAATTAAAAAAACAAATTTCTTAATTTTTTTTTTTTAAAGATTTAGACTTTATCCAATTTAAGAAACTGCGACATTTCTATAAAGTTTGTTTTGCAAAATGGATGTTTATGAAGATCAGGTAATTGTTCTACTATAACAGCAGCTTGGCTGTCTCAAAATTGGCTGGACTTTGTAAATTTATATCTTTAATTTATCTTTAAGAGAAACCTTAGCGTCTTGTTAGAAAGAAAGAAGATGAAAAACCATGTTAAATTAAGAGTTAGTTTAAACCAATTTAATACTGCTACAACTATAATGGCTATTCCCTTTGTGAGTATTATGAACCTAAACTCGTCTTTGTCTCCTCCGTCCAGTTGTTGCCAAGTCTTACTTTTTGGATTAGAGCCCTTTTCTGCTTAGCTAGTTCTTGAGGTTACCTTTCTCAGGCTATTTTCTGTATGCCCCCTCTTGTTCTTTAATGTTTCTTAATATAACCATTTTTTATTGTAAAATGATTTTCTGTTCAGTTATCTTGTTTTTGAGCATTTGAAGTAACATCTTCACTTGGTCGTCTATGGGAGGAATAAGTCTTAGTCCTTTGAAGCTGACTTTAGTTTATAGCCTTCCAAGCATATGCACCAATTTTGTTGATGTACACATTTTTTACTTCTCTCTGCTTCAATGTTTTCTGTTCTCTCTATGAAGCTTTTTTATTTCTCCCTTTTTGTTTAACTACTTTTCCTTCAACTATTTTTTTAATAGAAATTTCTTTTTTTCCCCTTGATTGTGTTCAATTGTTTGAATATTCAGGTACGATGCTACAATTGAAGCTCACACTGTAAATGGTTTCTATGTTAGTTATGATGGCTGGGGAAACAAAGAAGAGGTAAGGTTTCACACTTGCTGTTTGCATGACTTTTGATTATTTTTAAGAGCGTTATCTTTTATCAGAAAAAAATGAGTATTATAGTATTTTTTCAAAATGATCTGGGTCCGACTCTCTAAATTAACTAGAAATGTGAGGAATGGATTCATGGTCTGTATGGGACACATTTCCCTTTAGATGGGTGCAATCTGTAGGCGTTAGGACTAAATGCATATGTAAGAATTCTTGGAAGGCCATCTTGGTTGGTTTTAGTTCCTTCGTTTGTTGGATTAGCTGGTATAAATACCATTGTCTCTCGTTGCAAGACTTGACTGAACATTAATAAAATTTTTGCATTTTGGTTTACTCTAGTTTGCCTGGAACTCATTCTCTCAGATCCTCTCCTATTTATGTTTCCCTAATAATTACTACGCCAACAACTAATAAGGTATTGTTTCTTTTTGAAAAGAAAATGCGTACATTATTGATTGATACATGGGAGAATCAACTGCAAAATACAAGAGTTAGCATGTGGGAGAGCGGCAATGAAGCTTAGGAGTTCAAATCATAATATTTATATTTTTGAAGATTAGGAGTTCTATATATAACTACACAAACATATGTATGTACGGACATACATATACCCATACCTGTTAAATGTAATAATTGACCTTTCAACTAAAATTGGCTGTCAGTAGTGCATCAATTGTCAACACTTATGGTATCTACTAATGTTAGGTGGACCCTGCAAATGTAAGAACAATCCAATTGGAAGTTAATCCTCTGCTTGAAGCAGAAAGAGTGGCTGAAGCTACAAAGCAGGCTATCAAACGCAAGATTGCTCAAGCTGCTTCTGTTGACTTTCAATCCCGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGATGTAGTAAGTAGTTGATAATTGTAATATTTTGTGGTGACTAATTTATTAGTCCAGTAATTAGTTTGTTATTTAGGACAAATGTAGTAGTGCATTTGGTTTGTACCTGTGGTGCTTGAGATTCGGAAATATATATATATAAACTTGCCTGATGTTAGTTTGTTTTGTATAGAAAGCCACCAAACGTAAGAAAATACATGCTTTCAAGTCAAAGATGCGGATAGAACAGCTTGAAGTTACCCAAAACAAACGGCAGAATGCTTGGCAGCAGTTTCAAACCGCAAAAGGGAAATCTAAGAAGGTAAATGTTGTGAAATCTAGCATTTTGGTGTTTTATATTGAGGCCCAACAGGTATAGAAGTCCCAAAGGCAAAAGGTTGTTTTTGAAAAGTATTTCAATTGACATTAATCAAAACAGAATATTAGTAGCTAGAAGATTTTTCCTCCCAACAAGACATCCAAGAAATCGCATGATGAACACCCTTGTGTATATTTACTTCAGGGAAAATCAACAACTCATTACTAGCTATAGAAATAAAGCACCAGCACTTCAGAGCACATTCTAGAGGGCTGAGTATTCTCTCTCACTAGCCAAACGCTCACCAATATCTCCGACATCACACTCACCTAATATCTATAACCCAAAAGATGCGAACTTAATGTCTAATTAATATTTTCCCAACTGGGAGTCTTTTAGTCTAGTGATGATTTATATACATCCAAATTTGCAGATTGGTTTCTTCTCTGGACGGAAGAGGGAGAGCATTTTCAAGTCTCCAGACGATCCGAATGGGAAGGTTGGTGTGACAGGAAGTGGAAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACGGTGGAGATGGACGAGTAAAAGTGAGATTAGAGTTTGTAGGTTGGTGGTTTCTTTGTATGTAACTTCATTTAGTATCCACAATCCATTTGATGCGATCTCTGTGGTTAGATTCATATAAATGTGGTGAAAGTTTAGGCGGGGGGGATTCCCTCCAAGTAACATAGTGTTTTTCTTATGAGAATGGTTACAAAGCCTAGCCATGACAGGCTCTCTTTTCCTGACATTTTTATGTTTACATTTTCTATTTCCTTATAGTTAATGGGATATGCACATTTACATGAAAAACCCAATCAACTGTGTTTAAATTTCCACTCCCACTCCCACTCCCACTCCCACCTTTCTTTAGAGATGATCCTCCTATGTTGTTTGAGGGAGCTTACTTTATAACATAGCATTTATTGATGTTGTATAACACGGGTATGAGTATGACCAACAACCTTACCTGCACAAGACCTGTTCTATAGATTCATTCGTGTTCTTGATTTCTAATAAACCAGGTGTGAC

mRNA sequence

ATGATGTGGTTTCAATTCAGGATCGAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGCATTTATAGGCACTCCAACATCATAAAACCAACGAGAAATTCTTTGAATGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGTGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCTCACACTGTAAATGGTTTCTATGTTAGTTATGATGGCTGGGGAAACAAAGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAATTGGAAGTTAATCCTCTGCTTGAAGCAGAAAGAGTGGCTGAAGCTACAAAGCAGGCTATCAAACGCAAGATTGCTCAAGCTGCTTCTGTTGACTTTCAATCCCGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGTAAGAAAATACATGCTTTCAAGTCAAAGATGCGGATAGAACAGCTTGAAGTTACCCAAAACAAACGGCAGAATGCTTGGCAGCAGTTTCAAACCGCAAAAGGGAAATCTAAGAAGATTGGTTTCTTCTCTGGACGGAAGAGGGAGAGCATTTTCAAGTCTCCAGACGATCCGAATGGGAAGGTTGGTGTGACAGGAAGTGGAAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACGGTGGAGATGGACGAGTAAAAGTGAGATTAGAGTTTGTAGGTTGGTGGTTTCTTTGTATGTAACTTCATTTAGTATCCACAATCCATTTGATGCGATCTCTGTGGTTAGATTCATATAAATGTGGTGAAAGTTTAGGCGGGGGGGATTCCCTCCAAGTAACATAGTGTTTTTCTTATGAGAATGGTTACAAAGCCTAGCCATGACAGGCTCTCTTTTCCTGACATTTTTATGTTTACATTTTCTATTTCCTTATAGTTAATGGGATATGCACATTTACATGAAAAACCCAATCAACTGTGTTTAAATTTCCACTCCCACTCCCACTCCCACTCCCACCTTTCTTTAGAGATGATCCTCCTATGTTGTTTGAGGGAGCTTACTTTATAACATAGCATTTATTGATGTTGTATAACACGGGTATGAGTATGACCAACAACCTTACCTGCACAAGACCTGTTCTATAGATTCATTCGTGTTCTTGATTTCTAATAAACCAGGTGTGAC

Coding sequence (CDS)

ATGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGTGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCTCACACTGTAAATGGTTTCTATGTTAGTTATGATGGCTGGGGAAACAAAGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAATTGGAAGTTAATCCTCTGCTTGAAGCAGAAAGAGTGGCTGAAGCTACAAAGCAGGCTATCAAACGCAAGATTGCTCAAGCTGCTTCTGTTGACTTTCAATCCCGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGTAAGAAAATACATGCTTTCAAGTCAAAGATGCGGATAGAACAGCTTGAAGTTACCCAAAACAAACGGCAGAATGCTTGGCAGCAGTTTCAAACCGCAAAAGGGAAATCTAAGAAGATTGGTTTCTTCTCTGGACGGAAGAGGGAGAGCATTTTCAAGTCTCCAGACGATCCGAATGGGAAGGTTGGTGTGACAGGAAGTGGAAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACGGTGGAGATGGACGAGTAA

Protein sequence

MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHLHLKGATVEMDE*

Homology

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BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q6DEY1 (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=8364 GN=smndc1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10
Identity = 62/196 (31.63%), Postives = 91/196 (46.43%), Query Frame = 0


Query: 11  EKFPIGTKVQAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVN 70
           + + +G K  AVWS+DG+WY+A I E    NG   +++ G+GN E     N+R       
Sbjct: 71  QSWKVGEKCMAVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLR------- 130

Query: 71  PLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR-KKIHAFK 130
           P+ E  +  E                   S NLP   +      E + A +  KK  A K
Sbjct: 131 PVEEGRKAKE------------------DSGNLPMSKK------EMIAAQREYKKKKALK 190

Query: 131 SKMRIEQLEVTQNKRQNAWQQFQT-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS 190
              RI++LE  +  ++  WQQF   A  K+KK     G+ + SIF SP+   GKVGV   
Sbjct: 191 KAQRIKELEQEREDQKVKWQQFNNKAYSKNKK-----GQVKRSIFASPESVTGKVGVGTC 230

Query: 191 G---KGLTEFQKREKH 200
           G   K +T++Q   K+
Sbjct: 251 GIADKPMTQYQDTSKY 230

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BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: O75940 (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=SMNDC1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 62/191 (32.46%), Postives = 88/191 (46.07%), Query Frame = 0


Query: 15  IGTKVQAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNPLLE 74
           +G K  AVWSEDG+ Y+A I E    NG   +++ G+GN              EV PLL 
Sbjct: 75  VGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGN-------------AEVTPLLN 134

Query: 75  AERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRI 134
            + V E  K          A  D  ++ +  K  I        +  + KK  A K   RI
Sbjct: 135 LKPVEEGRK----------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRI 194

Query: 135 EQLEVTQNKRQNAWQQFQT-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---K 194
           ++LE  +  ++  WQQF   A  K+KK     G+ + SIF SP+   GKVGV   G   K
Sbjct: 195 KELEQEREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADK 230

Query: 195 GLTEFQKREKH 200
            +T++Q   K+
Sbjct: 255 PMTQYQDTSKY 230

[Close]

BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q3T045 (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 61/191 (31.94%), Postives = 88/191 (46.07%), Query Frame = 0


Query: 15  IGTKVQAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNPLLE 74
           +G K  A+WSEDG+ Y+A I E    NG   +++ G+GN              EV PLL 
Sbjct: 75  VGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGN-------------AEVTPLLN 134

Query: 75  AERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRI 134
            + V E  K          A  D  ++ +  K  I        +  + KK  A K   RI
Sbjct: 135 LKPVEEGRK----------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRI 194

Query: 135 EQLEVTQNKRQNAWQQFQT-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---K 194
           ++LE  +  ++  WQQF   A  K+KK     G+ + SIF SP+   GKVGV   G   K
Sbjct: 195 KELEQEREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADK 230

Query: 195 GLTEFQKREKH 200
            +T++Q   K+
Sbjct: 255 PMTQYQDTSKY 230

[Close]

BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q5R591 (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09
Identity = 61/191 (31.94%), Postives = 88/191 (46.07%), Query Frame = 0


Query: 15  IGTKVQAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNPLLE 74
           +G K  A+WSEDG+ Y+A I E    NG   +++ G+GN              EV PLL 
Sbjct: 75  VGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGN-------------AEVTPLLN 134

Query: 75  AERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRI 134
            + V E  K          A  D  ++ +  K  I        +  + KK  A K   RI
Sbjct: 135 LKPVEEGRK----------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRI 194

Query: 135 EQLEVTQNKRQNAWQQFQT-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---K 194
           ++LE  +  ++  WQQF   A  K+KK     G+ + SIF SP+   GKVGV   G   K
Sbjct: 195 KELEQEREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADK 230

Query: 195 GLTEFQKREKH 200
            +T++Q   K+
Sbjct: 255 PMTQYQDTSKY 230

[Close]

BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q8BGT7 (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus OX=10090 GN=Smndc1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-08
Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 0


Query: 15  IGTKVQAVWSEDGEWYDATI-EAHTVNG-FYVSYDGWGNKEEVDPANVRTIQLEVNPLLE 74
           +G K  AVWSEDG+ Y+A I E    NG   +++  +GN              EV PLL 
Sbjct: 75  VGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGN-------------AEVTPLLN 134

Query: 75  AERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRI 134
            + V E  K          A  D  ++ +  K  I        +  + KK  A K   RI
Sbjct: 135 LKPVEEGRK----------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRI 194

Query: 135 EQLEVTQNKRQNAWQQFQT-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---K 194
           ++LE  +  ++  WQQF   A  K+KK     G+ + SIF SP+   GKVGV   G   K
Sbjct: 195 KELEQEREDQKVKWQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADK 230

Query: 195 GLTEFQKREKH 200
            +T++Q   K+
Sbjct: 255 PMTQYQDTSKY 230

[Close]

BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A1S3CE07 (survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112
Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 59  MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 118

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR
Sbjct: 119 RTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 178

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGK
Sbjct: 179 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGK 238

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 239 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 269

[Close]

BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A1S3CD96 (survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112
Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 64  MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 123

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR
Sbjct: 124 RTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 183

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGK
Sbjct: 184 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGK 243

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 244 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 274

[Close]

BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A5D3CT47 (Survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001400 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.1e-112
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 2   EAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVR 61
           EAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVR
Sbjct: 14  EAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVR 73

Query: 62  TIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRK 121
           TIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRK
Sbjct: 74  TIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRK 133

Query: 122 KIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKV 181
           KIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGKV
Sbjct: 134 KIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKV 193

Query: 182 GVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           GVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 194 GVTGSGKGLTEFQKREKHLHLKGATVEMDE 223

[Close]

BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A6J1K7R2 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 GN=LOC111493029 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110
Identity = 203/211 (96.21%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEA SMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 89  MEAESMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 148

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKR
Sbjct: 149 RTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKR 208

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGK
Sbjct: 209 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGK 268

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGA+VEMD+
Sbjct: 269 VGVTGSGKGLTEFQKREKHLHLKGASVEMDD 299

[Close]

BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A6J1EY48 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=3662 GN=LOC111439780 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110
Identity = 203/211 (96.21%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEA SMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 89  MEAESMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 148

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKR
Sbjct: 149 RTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKR 208

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRK+ESIFKSPDDPNGK
Sbjct: 209 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGK 268

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGA+VEMD+
Sbjct: 269 VGVTGSGKGLTEFQKREKHLHLKGASVEMDD 299

[Close]

BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_004142809.1 (survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 6.0e-114
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 43  MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 102

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR
Sbjct: 103 RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 162

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK
Sbjct: 163 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 222

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 223 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 253

[Close]

BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_004142808.1 (survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus] >KGN51867.2 hypothetical protein Csa_008126 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 6.0e-114
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 89  MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 148

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR
Sbjct: 149 RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 208

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK
Sbjct: 209 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 268

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 269 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 299

[Close]

BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_008460593.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 59  MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 118

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR
Sbjct: 119 RTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 178

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGK
Sbjct: 179 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGK 238

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 239 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 269

[Close]

BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_008460591.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0


Query: 1   MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 60
           MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV
Sbjct: 64  MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANV 123

Query: 61  RTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 120
           RTIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR
Sbjct: 124 RTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKR 183

Query: 121 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGK 180
           KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGK
Sbjct: 184 KKIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGK 243

Query: 181 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           VGVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 244 VGVTGSGKGLTEFQKREKHLHLKGATVEMDE 274

[Close]

BLAST of CSPI05G18540 vs. NCBI nr
Match: KAA0054181.1 (survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo var. makuwa] >TYK15083.1 survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 2   EAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVR 61
           EAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVR
Sbjct: 14  EAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVR 73

Query: 62  TIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRK 121
           TIQLEVN LLEAER+AEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRK
Sbjct: 74  TIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRK 133

Query: 122 KIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKV 181
           KIHAFKSKMRIEQLEVTQNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGKV
Sbjct: 134 KIHAFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKV 193

Query: 182 GVTGSGKGLTEFQKREKHLHLKGATVEMDE 212
           GVTGSGKGLTEFQKREKHLHLKGATVEMDE
Sbjct: 194 GVTGSGKGLTEFQKREKHLHLKGATVEMDE 223

[Close]

BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.1 (nucleic acid binding;RNA binding )

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82
Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 10  HE-KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN 69
           HE KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E N
Sbjct: 99  HEGKFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQN 158

Query: 70  PLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKS 129
            ++EAER+A+ATK A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKS
Sbjct: 159 AIVEAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKS 218

Query: 130 KMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGK 189
           K R EQLEV QNK+QN WQQFQT K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGK
Sbjct: 219 KARFEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGK 278

Query: 190 GLTEFQKREKHLHLKGATVE 209
           GLT+FQKREKHLHLK    E
Sbjct: 279 GLTDFQKREKHLHLKSGNAE 296

[Close]

BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.2 (nucleic acid binding;RNA binding )

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82
Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 10  HE-KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN 69
           HE KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E N
Sbjct: 99  HEGKFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQN 158

Query: 70  PLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKS 129
            ++EAER+A+ATK A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKS
Sbjct: 159 AIVEAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKS 218

Query: 130 KMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGK 189
           K R EQLEV QNK+QN WQQFQT K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGK
Sbjct: 219 KARFEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGK 278

Query: 190 GLTEFQKREKHLHLKGATVE 209
           GLT+FQKREKHLHLK    E
Sbjct: 279 GLTDFQKREKHLHLKSGNAE 296

[Close]

BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.4 (nucleic acid binding;RNA binding )

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82
Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 10  HE-KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN 69
           HE KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E N
Sbjct: 99  HEGKFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQN 158

Query: 70  PLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKS 129
            ++EAER+A+ATK A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKS
Sbjct: 159 AIVEAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKS 218

Query: 130 KMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGK 189
           K R EQLEV QNK+QN WQQFQT K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGK
Sbjct: 219 KARFEQLEVVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGK 278

Query: 190 GLTEFQKREKHLHLKGATVE 209
           GLT+FQKREKHLHLK    E
Sbjct: 279 GLTDFQKREKHLHLKSGNAE 296

[Close]

BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.3 (nucleic acid binding;RNA binding )

HSP 1 Score: 275.8 bits (704), Expect = 2.9e-74
Identity = 138/200 (69.00%), Postives = 164/200 (82.00%), Query Frame = 0


Query: 10  HE-KFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVN 69
           HE KFP+GTKVQAV+S+DGEWYDATIEAHT NG++V+YD WGNKEEVDP NVR I  E N
Sbjct: 99  HEGKFPVGTKVQAVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQN 158

Query: 70  PLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKS 129
            ++EAER+A+ATK A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIH    
Sbjct: 159 AIVEAERLAQATKNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIH---- 218

Query: 130 KMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGK 189
                   V QNK+QN WQQFQT K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGK
Sbjct: 219 --------VVQNKKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGK 278

Query: 190 GLTEFQKREKHLHLKGATVE 209
           GLT+FQKREKHLHLK    E
Sbjct: 279 GLTDFQKREKHLHLKSGNAE 284

The following BLAST results are available for this feature:

BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DEY1	2.2e-10	31.63	Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=836...	[more]
O75940	3.2e-09	32.46	Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=S...	[more]
Q3T045	4.2e-09	31.94	Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMN...	[more]
Q5R591	4.2e-09	31.94	Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=S...	[more]
Q8BGT7	3.6e-08	31.94	Survival of motor neuron-related-splicing factor 30 OS=Mus musculus OX=10090 GN=...	[more]

BLAST of CSPI05G18540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CE07	1.6e-112	98.58	survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo O...	[more]
A0A1S3CD96	1.6e-112	98.58	survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo O...	[more]
A0A5D3CT47	6.1e-112	98.57	Survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo v...	[more]
A0A6J1K7R2	4.4e-110	96.21	survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EY48	4.4e-110	96.21	survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=366...	[more]

BLAST of CSPI05G18540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142809.1	6.0e-114	100.00	survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus]	[more]
XP_004142808.1	6.0e-114	100.00	survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus]...	[more]
XP_008460593.1	3.3e-112	98.58	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucum...	[more]
XP_008460591.1	3.3e-112	98.58	PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucum...	[more]
KAA0054181.1	1.3e-111	98.57	survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo var...	[more]

BLAST of CSPI05G18540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02570.1	5.0e-82	74.00	nucleic acid binding;RNA binding	[more]
AT2G02570.2	5.0e-82	74.00	nucleic acid binding;RNA binding	[more]
AT2G02570.4	5.0e-82	74.00	nucleic acid binding;RNA binding	[more]
AT2G02570.3	2.9e-74	69.00	nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002999	Tudor domain	SMART	SM00333	TUDOR_7	coord: 11..68 e-value: 1.7E-11 score: 54.2
IPR002999	Tudor domain	PROSITE	PS50304	TUDOR	coord: 12..70 score: 13.464428
IPR002999	Tudor domain	CDD	cd04508	TUDOR	coord: 16..61 e-value: 4.00047E-11 score: 54.1411
IPR010304	Survival motor neuron	PFAM	PF06003	SMN	coord: 12..67 e-value: 3.0E-6 score: 26.7
None	No IPR available	GENE3D	2.30.30.140		coord: 8..64 e-value: 3.2E-11 score: 44.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..188
None	No IPR available	PANTHER	PTHR13681	SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED	coord: 9..204
None	No IPR available	PANTHER	PTHR13681:SF32	BNAA06G34090D PROTEIN	coord: 9..204
None	No IPR available	SUPERFAMILY	63748	Tudor/PWWP/MBT	coord: 12..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G18540.1	CSPI05G18540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding