CSPI05G18540 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTGGTTTCAATTCAGGATCGAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGCATTTATAGGCACTCCAACATCATAAAACCAACGAGAAATTCTTTGAATGGTTTGCTCCCTCTTCTCCTTTTTGTATGCTTCACTCATCATGCTTGTTTTCCCTTTCCTTTGTCATTCTTTCAATTTTGAACCACAACTTCTGGGTTAGGCGTAAAATATACATCTATTGGACCTTTTGTCCTGGCTTCTTTGAACATGGTGCCACTCTTTTATTTGGTTTACTTACATACACTTCTTCATTCTCAATACCATAAGCGTTGTCAATATCATCAATCAAATTTCTTTACTTTTTAATCTCCTTTTTCTTAAGGCCTTAATTTCTTCCTTCATGTGATCAAGGAATTTTCTACAAACAGTGACATTTCTATAACCACCAACTAGGTGTTTTTTCATTCTCCGAACTTCTCATTTAGTTGCTTTTGAACAAAATTCCACACTAATGTATTAACATCTTGCTCATTTTGCAATCAAGCGTATTTCCATGCTGGATCTTTTCTTAAACTGTCCTCAGCCATCTGATTATTTAGAAAATTAAACTCTGTTAGAAATTAACGTAAGAAATTGATCACAAAAGTTAGGAGCTGGGACATACCAAAAATTTGATAAAGATTGAACTTCAAACGCTACTGTTTTGGAGAGTTGTCAACTAGAAGAGATGAAGTTGAAGCCTTAAAGGTTGCTTTATTTTACTCTTTTCTGCTTTTGAAGACAACTCAAAGAATAGACTTCGGAAAAGGAGCCGAGGAGGTGTTCTGTTTTTTTTTTGTTAAGGAGGAGGAGAAGGAGAAGTTGAAGAGCGTTCGGTTTTTCTTAAAGAGCCGAGGAGGTGTTTTGTTTTTTCTTTTCTTGAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAGGAGACGTTCATACCGTTTTTTGAAATAGAGGTTCAGCTTGTACTTTAAATTAATCTTAGCCATCGGTATAAATTGTATAATGATGCTTTATTTCGAATTAGGTTAAGAAAAAAATAAATATATTATATTTTATAATAAACGGTAGCCAAAATTTTGTTTTAAGGGATTTGTAAAAGAAAAAAAAAAAGCTCAAAGATGCGCTTTGCAGAAGGCACGCTCCTTCCTCAATGCCTCACCTATCCAAGGCGAGGCGCCAATGTTGTGCCTTGGGCCTAGGTGTGTGCTAGAGTATGCCTTTCAAAACACTGCAAGGTAGAGAGAGGGACCATAATGAGGAATGGGATTTGATTAGATTTCATGTGTCTATTTGGGCTTCAGTTTCAAAGACCTTTTGAAACTATTCCTTAGGACATTTTAATTAGCTGGAATCCCTTTTTATAGGTGGGGTGCTTTGTTGGGCTGGTTTTTCTTTTTTGTATATCATTGTATTCTTTCATTCTTTCTCAAAGAAAGTTGTTTCTATAAAAAAAAAGCAGAGAATTCTCTCCCAAATTTCCCAATTAGAAAATCCCACATAAAACTCTTTACACACTTCCTCTCAACCCACACCTTTCTATTTATAGCAAAAAACCCTAACAAACTCATTATTGAATTACTATTTTTCCCTTTCTACTAACCAATATTAATATTCTCCTAATAATCCTAATATTTCGTTACTAGGGGCCTTACCGAGATGTTTAGTGATCTAATATTCTATGTTCTTGGTATGCAGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGTGAGGATGGGGAGTGGTGAGTAAAAATAAAAGGAGAAAATTTACCATCTTACTTAAACAGTATCTGTTCCTTAGGTTGTACAAGGGTTGTAAAAAAGGAAGTTTATTCTCCAATAGTAAAAGAGTATCTGTTCGGTAGTTAGAAAAGAGATGCTGAAGATGTGTGCTTAAAGTTTACTAAGGACTCAAGTGCGAAAATAATAAGTTTCTGCATGGAATTTTTTCTTTAATAATTTTTTTAATTAAAAAAACAAATTTCTTAATTTTTTTTTTTTAAAGATTTAGACTTTATCCAATTTAAGAAACTGCGACATTTCTATAAAGTTTGTTTTGCAAAATGGATGTTTATGAAGATCAGGTAATTGTTCTACTATAACAGCAGCTTGGCTGTCTCAAAATTGGCTGGACTTTGTAAATTTATATCTTTAATTTATCTTTAAGAGAAACCTTAGCGTCTTGTTAGAAAGAAAGAAGATGAAAAACCATGTTAAATTAAGAGTTAGTTTAAACCAATTTAATACTGCTACAACTATAATGGCTATTCCCTTTGTGAGTATTATGAACCTAAACTCGTCTTTGTCTCCTCCGTCCAGTTGTTGCCAAGTCTTACTTTTTGGATTAGAGCCCTTTTCTGCTTAGCTAGTTCTTGAGGTTACCTTTCTCAGGCTATTTTCTGTATGCCCCCTCTTGTTCTTTAATGTTTCTTAATATAACCATTTTTTATTGTAAAATGATTTTCTGTTCAGTTATCTTGTTTTTGAGCATTTGAAGTAACATCTTCACTTGGTCGTCTATGGGAGGAATAAGTCTTAGTCCTTTGAAGCTGACTTTAGTTTATAGCCTTCCAAGCATATGCACCAATTTTGTTGATGTACACATTTTTTACTTCTCTCTGCTTCAATGTTTTCTGTTCTCTCTATGAAGCTTTTTTATTTCTCCCTTTTTGTTTAACTACTTTTCCTTCAACTATTTTTTTAATAGAAATTTCTTTTTTTCCCCTTGATTGTGTTCAATTGTTTGAATATTCAGGTACGATGCTACAATTGAAGCTCACACTGTAAATGGTTTCTATGTTAGTTATGATGGCTGGGGAAACAAAGAAGAGGTAAGGTTTCACACTTGCTGTTTGCATGACTTTTGATTATTTTTAAGAGCGTTATCTTTTATCAGAAAAAAATGAGTATTATAGTATTTTTTCAAAATGATCTGGGTCCGACTCTCTAAATTAACTAGAAATGTGAGGAATGGATTCATGGTCTGTATGGGACACATTTCCCTTTAGATGGGTGCAATCTGTAGGCGTTAGGACTAAATGCATATGTAAGAATTCTTGGAAGGCCATCTTGGTTGGTTTTAGTTCCTTCGTTTGTTGGATTAGCTGGTATAAATACCATTGTCTCTCGTTGCAAGACTTGACTGAACATTAATAAAATTTTTGCATTTTGGTTTACTCTAGTTTGCCTGGAACTCATTCTCTCAGATCCTCTCCTATTTATGTTTCCCTAATAATTACTACGCCAACAACTAATAAGGTATTGTTTCTTTTTGAAAAGAAAATGCGTACATTATTGATTGATACATGGGAGAATCAACTGCAAAATACAAGAGTTAGCATGTGGGAGAGCGGCAATGAAGCTTAGGAGTTCAAATCATAATATTTATATTTTTGAAGATTAGGAGTTCTATATATAACTACACAAACATATGTATGTACGGACATACATATACCCATACCTGTTAAATGTAATAATTGACCTTTCAACTAAAATTGGCTGTCAGTAGTGCATCAATTGTCAACACTTATGGTATCTACTAATGTTAGGTGGACCCTGCAAATGTAAGAACAATCCAATTGGAAGTTAATCCTCTGCTTGAAGCAGAAAGAGTGGCTGAAGCTACAAAGCAGGCTATCAAACGCAAGATTGCTCAAGCTGCTTCTGTTGACTTTCAATCCCGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGATGTAGTAAGTAGTTGATAATTGTAATATTTTGTGGTGACTAATTTATTAGTCCAGTAATTAGTTTGTTATTTAGGACAAATGTAGTAGTGCATTTGGTTTGTACCTGTGGTGCTTGAGATTCGGAAATATATATATATAAACTTGCCTGATGTTAGTTTGTTTTGTATAGAAAGCCACCAAACGTAAGAAAATACATGCTTTCAAGTCAAAGATGCGGATAGAACAGCTTGAAGTTACCCAAAACAAACGGCAGAATGCTTGGCAGCAGTTTCAAACCGCAAAAGGGAAATCTAAGAAGGTAAATGTTGTGAAATCTAGCATTTTGGTGTTTTATATTGAGGCCCAACAGGTATAGAAGTCCCAAAGGCAAAAGGTTGTTTTTGAAAAGTATTTCAATTGACATTAATCAAAACAGAATATTAGTAGCTAGAAGATTTTTCCTCCCAACAAGACATCCAAGAAATCGCATGATGAACACCCTTGTGTATATTTACTTCAGGGAAAATCAACAACTCATTACTAGCTATAGAAATAAAGCACCAGCACTTCAGAGCACATTCTAGAGGGCTGAGTATTCTCTCTCACTAGCCAAACGCTCACCAATATCTCCGACATCACACTCACCTAATATCTATAACCCAAAAGATGCGAACTTAATGTCTAATTAATATTTTCCCAACTGGGAGTCTTTTAGTCTAGTGATGATTTATATACATCCAAATTTGCAGATTGGTTTCTTCTCTGGACGGAAGAGGGAGAGCATTTTCAAGTCTCCAGACGATCCGAATGGGAAGGTTGGTGTGACAGGAAGTGGAAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACGGTGGAGATGGACGAGTAAAAGTGAGATTAGAGTTTGTAGGTTGGTGGTTTCTTTGTATGTAACTTCATTTAGTATCCACAATCCATTTGATGCGATCTCTGTGGTTAGATTCATATAAATGTGGTGAAAGTTTAGGCGGGGGGGATTCCCTCCAAGTAACATAGTGTTTTTCTTATGAGAATGGTTACAAAGCCTAGCCATGACAGGCTCTCTTTTCCTGACATTTTTATGTTTACATTTTCTATTTCCTTATAGTTAATGGGATATGCACATTTACATGAAAAACCCAATCAACTGTGTTTAAATTTCCACTCCCACTCCCACTCCCACTCCCACCTTTCTTTAGAGATGATCCTCCTATGTTGTTTGAGGGAGCTTACTTTATAACATAGCATTTATTGATGTTGTATAACACGGGTATGAGTATGACCAACAACCTTACCTGCACAAGACCTGTTCTATAGATTCATTCGTGTTCTTGATTTCTAATAAACCAGGTGTGAC ATGATGTGGTTTCAATTCAGGATCGAATTGTCCTATTGCCTCAATCATAGGGGCAAAGCTATCATAAGTGCAAGCATTTATAGGCACTCCAACATCATAAAACCAACGAGAAATTCTTTGAATGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGTGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCTCACACTGTAAATGGTTTCTATGTTAGTTATGATGGCTGGGGAAACAAAGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAATTGGAAGTTAATCCTCTGCTTGAAGCAGAAAGAGTGGCTGAAGCTACAAAGCAGGCTATCAAACGCAAGATTGCTCAAGCTGCTTCTGTTGACTTTCAATCCCGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGTAAGAAAATACATGCTTTCAAGTCAAAGATGCGGATAGAACAGCTTGAAGTTACCCAAAACAAACGGCAGAATGCTTGGCAGCAGTTTCAAACCGCAAAAGGGAAATCTAAGAAGATTGGTTTCTTCTCTGGACGGAAGAGGGAGAGCATTTTCAAGTCTCCAGACGATCCGAATGGGAAGGTTGGTGTGACAGGAAGTGGAAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACGGTGGAGATGGACGAGTAAAAGTGAGATTAGAGTTTGTAGGTTGGTGGTTTCTTTGTATGTAACTTCATTTAGTATCCACAATCCATTTGATGCGATCTCTGTGGTTAGATTCATATAAATGTGGTGAAAGTTTAGGCGGGGGGGATTCCCTCCAAGTAACATAGTGTTTTTCTTATGAGAATGGTTACAAAGCCTAGCCATGACAGGCTCTCTTTTCCTGACATTTTTATGTTTACATTTTCTATTTCCTTATAGTTAATGGGATATGCACATTTACATGAAAAACCCAATCAACTGTGTTTAAATTTCCACTCCCACTCCCACTCCCACTCCCACCTTTCTTTAGAGATGATCCTCCTATGTTGTTTGAGGGAGCTTACTTTATAACATAGCATTTATTGATGTTGTATAACACGGGTATGAGTATGACCAACAACCTTACCTGCACAAGACCTGTTCTATAGATTCATTCGTGTTCTTGATTTCTAATAAACCAGGTGTGAC ATGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGAACAAAAGTTCAAGCTGTTTGGAGTGAGGATGGGGAGTGGTACGATGCTACAATTGAAGCTCACACTGTAAATGGTTTCTATGTTAGTTATGATGGCTGGGGAAACAAAGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAATTGGAAGTTAATCCTCTGCTTGAAGCAGAAAGAGTGGCTGAAGCTACAAAGCAGGCTATCAAACGCAAGATTGCTCAAGCTGCTTCTGTTGACTTTCAATCCCGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGATGTAAAAGCCACCAAACGTAAGAAAATACATGCTTTCAAGTCAAAGATGCGGATAGAACAGCTTGAAGTTACCCAAAACAAACGGCAGAATGCTTGGCAGCAGTTTCAAACCGCAAAAGGGAAATCTAAGAAGATTGGTTTCTTCTCTGGACGGAAGAGGGAGAGCATTTTCAAGTCTCCAGACGATCCGAATGGGAAGGTTGGTGTGACAGGAAGTGGAAAGGGTTTGACTGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACGGTGGAGATGGACGAGTAA MEAGSMSDYHEKFPIGTKVQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVTQNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHLHLKGATVEMDE* Homology
BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q6DEY1 (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=8364 GN=smndc1 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10 Identity = 62/196 (31.63%), Postives = 91/196 (46.43%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: O75940 (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=SMNDC1 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09 Identity = 62/191 (32.46%), Postives = 88/191 (46.07%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q3T045 (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMNDC1 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09 Identity = 61/191 (31.94%), Postives = 88/191 (46.07%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q5R591 (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=SMNDC1 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.2e-09 Identity = 61/191 (31.94%), Postives = 88/191 (46.07%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy Swiss-Prot
Match: Q8BGT7 (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus OX=10090 GN=Smndc1 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.6e-08 Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A1S3CE07 (survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1) HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112 Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A1S3CD96 (survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1) HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112 Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A5D3CT47 (Survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001400 PE=4 SV=1) HSP 1 Score: 413.3 bits (1061), Expect = 6.1e-112 Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A6J1K7R2 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 GN=LOC111493029 PE=4 SV=1) HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110 Identity = 203/211 (96.21%), Postives = 209/211 (99.05%), Query Frame = 0
BLAST of CSPI05G18540 vs. ExPASy TrEMBL
Match: A0A6J1EY48 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=3662 GN=LOC111439780 PE=4 SV=1) HSP 1 Score: 407.1 bits (1045), Expect = 4.4e-110 Identity = 203/211 (96.21%), Postives = 209/211 (99.05%), Query Frame = 0
BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_004142809.1 (survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis sativus]) HSP 1 Score: 421.0 bits (1081), Expect = 6.0e-114 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_004142808.1 (survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus] >KGN51867.2 hypothetical protein Csa_008126 [Cucumis sativus]) HSP 1 Score: 421.0 bits (1081), Expect = 6.0e-114 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_008460593.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo]) HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112 Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of CSPI05G18540 vs. NCBI nr
Match: XP_008460591.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo]) HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112 Identity = 208/211 (98.58%), Postives = 210/211 (99.53%), Query Frame = 0
BLAST of CSPI05G18540 vs. NCBI nr
Match: KAA0054181.1 (survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo var. makuwa] >TYK15083.1 survival of motor neuron-related-splicing factor 30 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111 Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 0
BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.1 (nucleic acid binding;RNA binding ) HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82 Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.2 (nucleic acid binding;RNA binding ) HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82 Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.4 (nucleic acid binding;RNA binding ) HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82 Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 0
BLAST of CSPI05G18540 vs. TAIR 10
Match: AT2G02570.3 (nucleic acid binding;RNA binding ) HSP 1 Score: 275.8 bits (704), Expect = 2.9e-74 Identity = 138/200 (69.00%), Postives = 164/200 (82.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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