CSPI05G17320 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G17320
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	photosynthetic NDH subunit of lumenal location 1, chloroplastic
Location	Chr5: 18544307 .. 18546982 (-)
RNA-Seq Expression	CSPI05G17320
Synteny	CSPI05G17320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAACGAAGAGCAGAAAGAAAGAGTGTGGGATATGACCACAAAAACCCAACCCAATTAGATATACCATTCTCAGCTTCCATTTTCCATTTTCCATTTTCCATTTTATCAGATATGGCCGTTTCAACCTCTTGCCTCAGTTGGGTTCCCGCCACTGCATCCAATTGGAAGGTTAGTCTATTTATTTTCATTCACCAATCTTGCAGGACCCAGTTCTTCCTTCTCATTCTATTTTAATTCCAGCTGAAGTTGCTTCCTTTCAATGAGCCTTCAACAGCTACTTCTTCATTTTCTTCCTCTAGTACCATCAATTGCTCAATTGAGAGAATTTCCCGTGATGAAGGTACGATTTGCAATCTTGAGTTTAATGCTTTGAATCCATGAGCTGTGTTACAGATTTGTAGTTTCAGAATGACTGCCATGCTGATTTTTTAAGAATGTGGTTTTTCCTTGCCTTTGTTACTTGTGGGATGGAAATGTTTATATGGTACTTATTTGGATTGCTTACTCTTGGAATTCGTGAGTAAATTTAGAGTTCTTGTGTGGAGTTATATGAACTTTGTAGCTTGCATGCAAGATATTTGCACCAAAATTGCTTAGAAGAAATGGGTTCAAAATCATTATGGTAACCTTTCTGGGGATTACTTGGCAACCAAATGTAGTACGACTTAGGTAGTTTTTGTTTGAGAAAGCAAAACAATGACTTCAGGTACTACGCCTTTTATACTAGGATTTTGATTCAGTTCTACTTGGAGCTTTTCTTTTCCTTCCTTGTAGTTGTTTCTTGAGCCTGGATATCCTTAATGATCCGTGGTAATATGATGATAATTAACCTTTAGGCATTTACAATAGAAGGCCGCTTTTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTGGGTGCGAGTCCCCTCTTTGCTGAAGGTATAAATTTTCAACTTTCTCCAATGATCTAGTGTTGGATTCTAAACTAATACTGTGATTGTTGTGTGCAGAAATCCCAAAGAATTATCGAGCATTTGTAGACTCTACAGATGGGTATTCCTATTATTACCCCTCTGATTGGAGGGTGAGATAATTTCAATTTGCAGAAACATGAGATGCATGTATAGTAACCCAAAAAATATACTAAAACAAACAGTTTCTAAACGCTCCCTGTCTAGGAATTTGATTTTCGAGCCCATGATTCGGCATTCAAGGATCGATACCTGCAACTACAAAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGACATCCATGAAGAAGGTCCATTAGATGAGGTAAAAGAATCCTCCATTTAGATCACATTTCATAATCTGATAAAAGAAGTATGAACAGTTTAACATGACTGAAGCAGGTTGTCAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGACTACCATATATGACATGAAGGAGGTTTGCGTTTTTCCTGCCTCTCAAATCTTGCGTTTTTCCTGCCTCTCAAATCAACTGGTCTATGTAATATTATCTTGAAATTTGTTTCTGGACATCTTATTTATCTTTTATTCCTCTATTTCAGCGAACGATTGATGGGAAAAATTATTACACCTTTGAGTATAAACTTAGTTCTAGAGCATTCTCCCGCACCTCCTTTGCAACCATAGCCATTGCCAACGGTAAGCTCATATTTTATTAGAATTTTGGACCCTTCCATTTTTTTATTTATCAGCTCTAAATCCCATGTTTTTCTAACCATACGATAGTTTACCTAAAACAGTAATAAAGAATATCAAATTGAGCTATTCAGTTTAGAAAGAGAGAACTGGAAAATTTTCAAACAACAGGATCGAAGTTAACCAAACTTATTTTATCAATTTGTATAATGCAATCCCGAACTAACTCATATCTAACCTATACTTTTTGTTTTTGGATTGAATATAATTTGTTTCATGTCAAGTTCCCAAGTTCTAGCTGATGAATTAAAACCCACATTTGTATATTCAAAGTGCGGATGTTTGTGCTCCGTACTTGCCTTGGGTGGATAGGCCATTTGAAATTTAGTCTGCCATGATAATAGTTAAAGTTTCCCATTATTATAATCCACGCTTGGCTACAATGAAACAATTTGAAAACTCTTCATTGTTTACAATATTTACTATTTTTCATGATCATCCTCTCTCCTGATTTGTAACTCAGATTAAAATCCTATGTACTCAAAAGTCAAAACTCGTGGTATAATAACCAACTTAATATCTCAAAAACCCCTTAATGTCTTTTAAGTACATGACTTTGAATCATCAACCTCAACAGAAAGAGTACATGTCATTATCATTGGTCTATGTTGGCCGATGGTCAGTAACATAACAAGCGTTATAAGCAGCTATATTTGTAATATGCAGGTAGGTACTACACATTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGCGATATGCTTAAAGTGGTTGCCGATTCATTCAGGGTGTTAGATATCTGAACTGTTTATGAAGGGATGTGAATCTCACCCCGTTTCTCCATTTAAAATTTTCCCTCTTCGTTTAATATCTATTGGAAATTGTTGTATATAGTTGGTAATATACCAATGTTCTTGTAAGATAATATAAACATTTGCTATAAATTGCTACAAAAATACCCAAGTTCTATTGGACTTCCCATTTGTCCACAGGTG

mRNA sequence

AGAAAGAACGAAGAGCAGAAAGAAAGAGTGTGGGATATGACCACAAAAACCCAACCCAATTAGATATACCATTCTCAGCTTCCATTTTCCATTTTCCATTTTCCATTTTATCAGATATGGCCGTTTCAACCTCTTGCCTCAGTTGGGTTCCCGCCACTGCATCCAATTGGAAGCTGAAGTTGCTTCCTTTCAATGAGCCTTCAACAGCTACTTCTTCATTTTCTTCCTCTAGTACCATCAATTGCTCAATTGAGAGAATTTCCCGTGATGAAGGCATTTACAATAGAAGGCCGCTTTTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTGGGTGCGAGTCCCCTCTTTGCTGAAGAAATCCCAAAGAATTATCGAGCATTTGTAGACTCTACAGATGGGTATTCCTATTATTACCCCTCTGATTGGAGGGAATTTGATTTTCGAGCCCATGATTCGGCATTCAAGGATCGATACCTGCAACTACAAAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGACATCCATGAAGAAGGTCCATTAGATGAGGTTGTCAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGACTACCATATATGACATGAAGGAGCGAACGATTGATGGGAAAAATTATTACACCTTTGAGTATAAACTTAGTTCTAGAGCATTCTCCCGCACCTCCTTTGCAACCATAGCCATTGCCAACGGTAGGTACTACACATTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGCGATATGCTTAAAGTGGTTGCCGATTCATTCAGGGTGTTAGATATCTGAACTGTTTATGAAGGGATGTGAATCTCACCCCGTTTCTCCATTTAAAATTTTCCCTCTTCGTTTAATATCTATTGGAAATTGTTGTATATAGTTGGTAATATACCAATGTTCTTGTAAGATAATATAAACATTTGCTATAAATTGCTACAAAAATACCCAAGTTCTATTGGACTTCCCATTTGTCCACAGGTG

Coding sequence (CDS)

ATGGCCGTTTCAACCTCTTGCCTCAGTTGGGTTCCCGCCACTGCATCCAATTGGAAGCTGAAGTTGCTTCCTTTCAATGAGCCTTCAACAGCTACTTCTTCATTTTCTTCCTCTAGTACCATCAATTGCTCAATTGAGAGAATTTCCCGTGATGAAGGCATTTACAATAGAAGGCCGCTTTTGTTGGGAGTTGGAGCTCTAGCTACAAGTTTACTGGGTGCGAGTCCCCTCTTTGCTGAAGAAATCCCAAAGAATTATCGAGCATTTGTAGACTCTACAGATGGGTATTCCTATTATTACCCCTCTGATTGGAGGGAATTTGATTTTCGAGCCCATGATTCGGCATTCAAGGATCGATACCTGCAACTACAAAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGACATCCATGAAGAAGGTCCATTAGATGAGGTTGTCAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGACTACCATATATGACATGAAGGAGCGAACGATTGATGGGAAAAATTATTACACCTTTGAGTATAAACTTAGTTCTAGAGCATTCTCCCGCACCTCCTTTGCAACCATAGCCATTGCCAACGGTAGGTACTACACATTGGTAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGCGATATGCTTAAAGTGGTTGCCGATTCATTCAGGGTGTTAGATATCTGA

Protein sequence

MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPLLLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI*

Homology

[Close]

BLAST of CSPI05G17320 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 265.0 bits (676), Expect = 8.1e-70
Identity = 136/236 (57.63%), Postives = 167/236 (70.76%), Query Frame = 0


Query: 2   AVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEG-IYNRRPL 61
           ++S  C  + P  +   K ++L  N    A    SS    + S     +  G  + RR  
Sbjct: 5   SLSIRCGGFSPTISH--KTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQA 64

Query: 62  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 121
           L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 65  LVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRY 124

Query: 122 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 181
           LQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ  TIYDMKER  DGKNYYT
Sbjct: 125 LQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYT 184

Query: 182 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEY L +  ++ TSFAT+A+ N RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 FEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CSPI05G17320 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 0


Query: 34  SFSSSSTINCSIERISRDEGIYNRRPLLLGVGALATSLLGASPL-FAEEIPKNYRAFVDS 93
           S SSSS +    +R         R  +  GV A   SLL  +PL FA E  K + A  D+
Sbjct: 37  SSSSSSHLQDKCQR---------RLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDN 96

Query: 94  TDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLV 153
            D Y++ YP  W+E      D  +KD    L++V V  +PT K+ I E GP  ++   L+
Sbjct: 97  KDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLI 156

Query: 154 KHRYAAPNQKTTIYDMKERTIDGKNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGA 213
           K   A PNQKTT+ D  E  +DGK YY FE+ + +R ++R +  TI + NG +YTL  GA
Sbjct: 157 KKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGA 216

Query: 214 NDRRWRRYRDMLKVVADSFRV 234
           N+RRW + +D L  V DSF++
Sbjct: 217 NERRWEKMKDRLHTVVDSFKI 228

[Close]

BLAST of CSPI05G17320 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.1e-05
Identity = 40/176 (22.73%), Postives = 72/176 (40.91%), Query Frame = 0


Query: 86  YRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKD---IHEEG 145
           +R ++D+ DGYS+ YP +W +      D  F+D  +  +N+ V+F      +   + + G
Sbjct: 109 FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLG 168

Query: 146 PLDEVVNFLVKH--------RYAAPNQKTTIYDMKERTIDGKNYYTFEYKLSSRA----- 205
             +EV   +++         R     Q   +        DGK YY  E  + S A     
Sbjct: 169 SPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNEL 228

Query: 206 ------------FSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRV 234
                       ++R   A + + N R Y++ +   ++ +      L+ V DSFRV
Sbjct: 229 AVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

[Close]

BLAST of CSPI05G17320 vs. ExPASy TrEMBL
Match: A0A0A0KNR7 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505780 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 7.3e-130
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL
Sbjct: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGK YYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKIYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. ExPASy TrEMBL
Match: A0A1S3CKZ3 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501649 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 228/236 (96.61%), Postives = 232/236 (98.31%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVP TASNWKLKLLPFNEP+TATSSFSSSSTINCSIER SRDEGIYNRRPL
Sbjct: 1   MAVSTSCLSWVPTTASNWKLKLLPFNEPTTATSSFSSSSTINCSIERTSRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLLGASPLFA+E+PKNYRAFVD TDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAQEVPKNYRAFVDYTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKVTIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRT+FATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTAFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. ExPASy TrEMBL
Match: A0A1S3CJF3 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501649 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.4e-125
Identity = 227/236 (96.19%), Postives = 231/236 (97.88%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVP TASNWKLKLLPFNEP+TATSSFSSSSTINCSIER SRDEGIYNRRPL
Sbjct: 1   MAVSTSCLSWVPTTASNWKLKLLPFNEPTTATSSFSSSSTINCSIERTSRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLLGASPLFA ++PKNYRAFVD TDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFA-QVPKNYRAFVDYTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKVTIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRT+FATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTAFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CSPI05G17320 vs. ExPASy TrEMBL
Match: A0A6J1GN93 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.2e-117
Identity = 212/236 (89.83%), Postives = 220/236 (93.22%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVP +ASNWK +LLPFNEPSTAT S+SS +TI CS ER SR E   NRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SL  ASPLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. ExPASy TrEMBL
Match: A0A6J1JS28 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.1e-117
Identity = 211/236 (89.41%), Postives = 220/236 (93.22%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVP +ASNWK +LLPFNEPSTAT S+SS +T+ CS ER SR E   NRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSL  A PLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRTSFATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. NCBI nr
Match: XP_004149826.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic [Cucumis sativus] >KGN51268.1 hypothetical protein Csa_009408 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 1.5e-129
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL
Sbjct: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGK YYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKIYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. NCBI nr
Match: XP_008463496.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 464.9 bits (1195), Expect = 4.1e-127
Identity = 228/236 (96.61%), Postives = 232/236 (98.31%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVP TASNWKLKLLPFNEP+TATSSFSSSSTINCSIER SRDEGIYNRRPL
Sbjct: 1   MAVSTSCLSWVPTTASNWKLKLLPFNEPTTATSSFSSSSTINCSIERTSRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLLGASPLFA+E+PKNYRAFVD TDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAQEVPKNYRAFVDYTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKVTIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRT+FATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTAFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. NCBI nr
Match: XP_008463498.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 458.0 bits (1177), Expect = 5.0e-125
Identity = 227/236 (96.19%), Postives = 231/236 (97.88%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSCLSWVP TASNWKLKLLPFNEP+TATSSFSSSSTINCSIER SRDEGIYNRRPL
Sbjct: 1   MAVSTSCLSWVPTTASNWKLKLLPFNEPTTATSSFSSSSTINCSIERTSRDEGIYNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLLGASPLFA ++PKNYRAFVD TDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFA-QVPKNYRAFVDYTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKVTIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRT+FATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTAFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CSPI05G17320 vs. NCBI nr
Match: XP_038889544.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 448.7 bits (1153), Expect = 3.0e-122
Identity = 221/236 (93.64%), Postives = 226/236 (95.76%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSC SWVP TASNWKL+LLPFNEPSTATSSFSS STINCS E+ SR+EG  NRRPL
Sbjct: 1   MAVSTSCFSWVPTTASNWKLRLLPFNEPSTATSSFSSCSTINCSTEKTSREEGHCNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLL ASPLFAEE+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQK TIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CSPI05G17320 vs. NCBI nr
Match: XP_038889545.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-120
Identity = 220/236 (93.22%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MAVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEGIYNRRPL 60
           MAVSTSC SWVP TASNWKL+LLPFNEPSTATSSFSS STINCS E+ SR+EG  NRRPL
Sbjct: 1   MAVSTSCFSWVPTTASNWKLRLLPFNEPSTATSSFSSCSTINCSTEKTSREEGHCNRRPL 60

Query: 61  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLL ASPLFA E+PKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLAASPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQK TIYDMKERTIDG+NYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGRNYYT 180

Query: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CSPI05G17320 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 )

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-71
Identity = 125/182 (68.68%), Postives = 148/182 (81.32%), Query Frame = 0


Query: 55  YNRRPLLLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDS 114
           + RR  L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDS
Sbjct: 49  WKRRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDS 108

Query: 115 AFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTID 174
           AFKDRYLQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ  TIYDMKER  D
Sbjct: 109 AFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVED 168

Query: 175 GKNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVL 234
           GKNYYTFEY L +  ++ TSFAT+A+ N RYYTL+VGAN+RRWR+ +  L+VVADS ++L
Sbjct: 169 GKNYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKIL 228

Query: 235 DI 237
            I
Sbjct: 229 QI 230

[Close]

BLAST of CSPI05G17320 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 )

HSP 1 Score: 265.0 bits (676), Expect = 5.8e-71
Identity = 136/236 (57.63%), Postives = 167/236 (70.76%), Query Frame = 0


Query: 2   AVSTSCLSWVPATASNWKLKLLPFNEPSTATSSFSSSSTINCSIERISRDEG-IYNRRPL 61
           ++S  C  + P  +   K ++L  N    A    SS    + S     +  G  + RR  
Sbjct: 5   SLSIRCGGFSPTISH--KTEILCPNPSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQA 64

Query: 62  LLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 121
           L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 65  LVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRY 124

Query: 122 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKERTIDGKNYYT 181
           LQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ  TIYDMKER  DGKNYYT
Sbjct: 125 LQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYYT 184

Query: 182 FEYKLSSRAFSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEY L +  ++ TSFAT+A+ N RYYTL+VGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 FEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CSPI05G17320 vs. TAIR 10
Match: AT2G39470.3 (PsbP-like protein 2 )

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-45
Identity = 85/116 (73.28%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 55  YNRRPLLLGVGALATSLLGASPLFAEEIPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDS 114
           + RR  L+GVG L  + + A+ L AEEIPK+Y  FVD  DGYSYYYPSDWREFDFRAHDS
Sbjct: 49  WKRRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDS 108

Query: 115 AFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKTTIYDMKE 171
           AFKDRYLQLQNVRV+FIPTEK DIHE GP++EVV  LVKH++AAPNQ  TIYDMKE
Sbjct: 109 AFKDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKE 164

[Close]

BLAST of CSPI05G17320 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 )

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-35
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 0


Query: 34  SFSSSSTINCSIERISRDEGIYNRRPLLLGVGALATSLLGASPL-FAEEIPKNYRAFVDS 93
           S SSSS +    +R         R  +  GV A   SLL  +PL FA E  K + A  D+
Sbjct: 37  SSSSSSHLQDKCQR---------RLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDN 96

Query: 94  TDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLV 153
            D Y++ YP  W+E      D  +KD    L++V V  +PT K+ I E GP  ++   L+
Sbjct: 97  KDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLI 156

Query: 154 KHRYAAPNQKTTIYDMKERTIDGKNYYTFEYKLSSRAFSRTSFATIAIANGRYYTLVVGA 213
           K   A PNQKTT+ D  E  +DGK YY FE+ + +R ++R +  TI + NG +YTL  GA
Sbjct: 157 KKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGA 216

Query: 214 NDRRWRRYRDMLKVVADSFRV 234
           N+RRW + +D L  V DSF++
Sbjct: 217 NERRWEKMKDRLHTVVDSFKI 228

[Close]

BLAST of CSPI05G17320 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.9e-06
Identity = 40/176 (22.73%), Postives = 72/176 (40.91%), Query Frame = 0


Query: 86  YRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKD---IHEEG 145
           +R ++D+ DGYS+ YP +W +      D  F+D  +  +N+ V+F      +   + + G
Sbjct: 109 FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLG 168

Query: 146 PLDEVVNFLVKH--------RYAAPNQKTTIYDMKERTIDGKNYYTFEYKLSSRA----- 205
             +EV   +++         R     Q   +        DGK YY  E  + S A     
Sbjct: 169 SPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNEL 228

Query: 206 ------------FSRTSFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRV 234
                       ++R   A + + N R Y++ +   ++ +      L+ V DSFRV
Sbjct: 229 AVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

The following BLAST results are available for this feature:

BLAST of CSPI05G17320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80634	8.1e-70	57.63	Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t...	[more]
P82538	3.2e-34	39.30	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 ...	[more]
O23403	4.1e-05	22.73	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CSPI05G17320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNR7	7.3e-130	99.58	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G505780 PE=4 S...	[more]
A0A1S3CKZ3	2.0e-127	96.61	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A1S3CJF3	2.4e-125	96.19	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cu...	[more]
A0A6J1GN93	3.2e-117	89.83	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A6J1JS28	4.1e-117	89.41	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]

BLAST of CSPI05G17320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149826.1	1.5e-129	99.58	photosynthetic NDH subunit of lumenal location 1, chloroplastic [Cucumis sativus...	[more]
XP_008463496.1	4.1e-127	96.61	PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isofo...	[more]
XP_008463498.1	5.0e-125	96.19	PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isofo...	[more]
XP_038889544.1	3.0e-122	93.64	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Beni...	[more]
XP_038889545.1	3.7e-120	93.22	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Beni...	[more]

BLAST of CSPI05G17320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39470.2	2.0e-71	68.68	PsbP-like protein 2	[more]
AT2G39470.1	5.8e-71	57.63	PsbP-like protein 2	[more]
AT2G39470.3	2.4e-45	73.28	PsbP-like protein 2	[more]
AT3G55330.1	2.3e-35	39.30	PsbP-like protein 1	[more]
AT4G15510.1	2.9e-06	22.73	Photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 73..233 e-value: 1.2E-37 score: 131.5
None	No IPR available	PANTHER	PTHR31407:SF10	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 1, CHLOROPLASTIC	coord: 1..236
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 1..236
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 85..233 e-value: 7.1E-40 score: 136.7
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 87..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G17320.1	CSPI05G17320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding