CSPI04G27610 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G27610
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	At4g19430
Location	Chr4: 24213680 .. 24214399 (-)
RNA-Seq Expression	CSPI04G27610
Synteny	CSPI04G27610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAATAAAACTTCACCTTCTTAAGTAGACTTCATAAAGAAAAAGGGAAAAAAATCTTCTTCTTCTCAAAGCCTTCTCTTCCTATCATCCATTAATGTCCGTTTCCACCCAACTTCTAGAGCTCGGAAGGCTTGAGAAGAAGGGAAAAAAGAGGATCAAAAGAGAGAGTTTAAAGAGAGAAAACAATGGCTATTATTCATACAAGGATGTGAGTGACAATGAAGAGCATGGAGAGAGTAAGGGAAGAAGAAGAAGAAAAAGAAGAAAGAAGGGTCAATTTGGGACTACAAGAGATGTTCTTCACATGAATTTTTGGTATTTTACTTCAACAATCAGTCATATACTAAGGAAGGCAAAAGCCTTTTATAATGAGTGTTGCTGTGATGCCTTTGAAGATGAGAGGATGAAGAAGAATGAAGTGATTTCTATTGATCCTTATTTCTCAATGCCTGTTTTGCCTTATACTACTATGGCTAATTGTATGTAAAATGATATAAAGGCATAAGAATGAGTGATTTAACTACTAGTAAGTAGTAAGTGTGTTTGTAATTGAACCAACTTATTTGCGTGTCTATGCTTAGAACAATATTTGGGGTCCATTTTGGAACTCTTTTGAAACAAAAGGAAGAGCCTTTTTCCTTTTGTTTTCAACATTGTTTGTAAGAATTATGATTTGGTGGCTAGTAATAAGTTAATAAGTTCTAAAAATTATTATGTGC

mRNA sequence

CTCAAATAAAACTTCACCTTCTTAAGTAGACTTCATAAAGAAAAAGGGAAAAAAATCTTCTTCTTCTCAAAGCCTTCTCTTCCTATCATCCATTAATGTCCGTTTCCACCCAACTTCTAGAGCTCGGAAGGCTTGAGAAGAAGGGAAAAAAGAGGATCAAAAGAGAGAGTTTAAAGAGAGAAAACAATGGCTATTATTCATACAAGGATGTGAGTGACAATGAAGAGCATGGAGAGAGTAAGGGAAGAAGAAGAAGAAAAAGAAGAAAGAAGGGTCAATTTGGGACTACAAGAGATGTTCTTCACATGAATTTTTGGTATTTTACTTCAACAATCAGTCATATACTAAGGAAGGCAAAAGCCTTTTATAATGAGTGTTGCTGTGATGCCTTTGAAGATGAGAGGATGAAGAAGAATGAAGTGATTTCTATTGATCCTTATTTCTCAATGCCTGTTTTGCCTTATACTACTATGGCTAATTGTATGTAAAATGATATAAAGGCATAAGAATGAGTGATTTAACTACTAGTAAGTAGTAAGTGTGTTTGTAATTGAACCAACTTATTTGCGTGTCTATGCTTAGAACAATATTTGGGGTCCATTTTGGAACTCTTTTGAAACAAAAGGAAGAGCCTTTTTCCTTTTGTTTTCAACATTGTTTGTAAGAATTATGATTTGGTGGCTAGTAATAAGTTAATAAGTTCTAAAAATTATTATGTGC

Coding sequence (CDS)

ATGTCCGTTTCCACCCAACTTCTAGAGCTCGGAAGGCTTGAGAAGAAGGGAAAAAAGAGGATCAAAAGAGAGAGTTTAAAGAGAGAAAACAATGGCTATTATTCATACAAGGATGTGAGTGACAATGAAGAGCATGGAGAGAGTAAGGGAAGAAGAAGAAGAAAAAGAAGAAAGAAGGGTCAATTTGGGACTACAAGAGATGTTCTTCACATGAATTTTTGGTATTTTACTTCAACAATCAGTCATATACTAAGGAAGGCAAAAGCCTTTTATAATGAGTGTTGCTGTGATGCCTTTGAAGATGAGAGGATGAAGAAGAATGAAGTGATTTCTATTGATCCTTATTTCTCAATGCCTGTTTTGCCTTATACTACTATGGCTAATTGTATGTAA

Protein sequence

MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPVLPYTTMANCM*

Homology

[Close]

BLAST of CSPI04G27610 vs. ExPASy TrEMBL
Match: A0A0A0L609 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.7e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANCM
Sbjct: 121 LPYTTMANCM 130

[Close]

BLAST of CSPI04G27610 vs. ExPASy TrEMBL
Match: A0A5D3BSQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00900 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MS+STQLL LGRLEKKG+KRIKRES KRE NGYYSYK+VSDN EHG+SKGRRRR+RRKKG
Sbjct: 1   MSLSTQLLGLGRLEKKGRKRIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDA+EDERM +    SIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERMFQ----SIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANC+
Sbjct: 121 LPYTTMANCL 126

[Close]

BLAST of CSPI04G27610 vs. ExPASy TrEMBL
Match: A0A5A7UDK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001040 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.5e-56
Identity = 112/130 (86.15%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MS+STQLL LGRLEKKG+K+IKRES KRE NGYYSYK+VSDN EHG+SKGRRRR+RRKKG
Sbjct: 1   MSLSTQLLGLGRLEKKGRKKIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDA+EDERM +    SIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERMFQ----SIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANC+
Sbjct: 121 LPYTTMANCL 126

[Close]

BLAST of CSPI04G27610 vs. ExPASy TrEMBL
Match: A0A6J1FKP2 (uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC111446301 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60
           MSVS Q+L L  L+KK KK  +RE L+RE  G++S       ++E+ G+ KGRRR K   
Sbjct: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQG 60

Query: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120

Query: 121 YFSMPVLPYTTMANCM 131
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVFPYTTMANCM 136

[Close]

BLAST of CSPI04G27610 vs. ExPASy TrEMBL
Match: A0A1Q3D8H6 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32173 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.8e-13
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 43  EEHGESKGRRRRKRRKK-GQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFED 102
           EEH E+ G +   R+KK G +        +  WY TS+IS+ILRKAKAFYNECCCDAFED
Sbjct: 31  EEHEENMGEKYMPRKKKPGHWAL--QFPRLGIWYMTSSISYILRKAKAFYNECCCDAFED 90

Query: 103 ERMKKNEVISIDPYFSMPVLPYTTMANCM 131
             +   +V  +D YFS PV+P  T++  M
Sbjct: 91  PVLMGKQVTLVDSYFSTPVVPPPTISPYM 117

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: KGN55571.1 (hypothetical protein Csa_012627 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 7.6e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG
Sbjct: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANCM
Sbjct: 121 LPYTTMANCM 130

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: TYK01842.1 (hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 227.6 bits (579), Expect = 6.1e-56
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MS+STQLL LGRLEKKG+KRIKRES KRE NGYYSYK+VSDN EHG+SKGRRRR+RRKKG
Sbjct: 1   MSLSTQLLGLGRLEKKGRKRIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDA+EDERM +    SIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERMFQ----SIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANC+
Sbjct: 121 LPYTTMANCL 126

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: KAA0052276.1 (hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 112/130 (86.15%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVSDNEEHGESKGRRRRKRRKKG 60
           MS+STQLL LGRLEKKG+K+IKRES KRE NGYYSYK+VSDN EHG+SKGRRRR+RRKKG
Sbjct: 1   MSLSTQLLGLGRLEKKGRKKIKRESSKRERNGYYSYKEVSDNAEHGDSKGRRRRRRRKKG 60

Query: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDPYFSMPV 120
           QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDA+EDERM +    SIDPYFSMPV
Sbjct: 61  QFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAYEDERMFQ----SIDPYFSMPV 120

Query: 121 LPYTTMANCM 131
           LPYTTMANC+
Sbjct: 121 LPYTTMANCL 126

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: KAG6608012.1 (hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60
           MSVS Q+L L  L+KK KK  +RE L+RE  G++S       ++E+ G+ KGRRR K   
Sbjct: 1   MSVSIQVLGLTSLQKKEKKCHRREILERERTGHFSTSQHGHHESEQPGDGKGRRREKKQG 60

Query: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120

Query: 121 YFSMPVLPYTTMANCM 131
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVFPYTTMANCM 136

[Close]

BLAST of CSPI04G27610 vs. NCBI nr
Match: XP_022940822.1 (uncharacterized protein LOC111446301 [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 2.6e-35
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 0


Query: 1   MSVSTQLLELGRLEKKGKKRIKRESLKRENNGYYSYKDVS--DNEEHGESKGRRRRK--- 60
           MSVS Q+L L  L+KK KK  +RE L+RE  G++S       ++E+ G+ KGRRR K   
Sbjct: 1   MSVSIQVLGLKSLQKKEKKCHRRELLERERTGHFSTSQHGHHESEQPGDGKGRRRVKKQG 60

Query: 61  -RRKKGQFGTTRDVLHMNFWYFTSTISHILRKAKAFYNECCCDAFEDERMKKNEVISIDP 120
            RRK  QFG  R VL  N WYFTSTIS+ILRKAKAFYNECCCDA+EDERMK+ EV  +DP
Sbjct: 61  RRRKTTQFGAARQVLQWNMWYFTSTISYILRKAKAFYNECCCDAYEDERMKRVEVAMVDP 120

Query: 121 YFSMPVLPYTTMANCM 131
           YFSMPV PYTTMANCM
Sbjct: 121 YFSMPVFPYTTMANCM 136

[Close]

BLAST of CSPI04G27610 vs. TAIR 10
Match: AT4G19430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 37  KDVSDNEEHGESKGRRRRKRRKKGQFGTTRDVLHMN-FWYFTSTISHILRKAKAFYNECC 96
           ++ ++ +EHG+   +  +           RDV  ++  WY   +ISHILRKA+AFYNE C
Sbjct: 78  EEETNQQEHGKVSNKDGKSITATKYGDLRRDVARLSLLWYMKCSISHILRKARAFYNEFC 137

Query: 97  CDAFEDERMKKNEVISIDPYFSMPVL 122
           CD + +     N +  ++PYFS+PV+
Sbjct: 138 CDTYAE----SNTMAVVEPYFSIPVI 159

The following BLAST results are available for this feature:

BLAST of CSPI04G27610 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G27610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L609	3.7e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G669230 PE=4 SV=1	[more]
A0A5D3BSQ8	2.9e-56	86.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UDK1	6.5e-56	86.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1FKP2	1.3e-35	63.24	uncharacterized protein LOC111446301 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A1Q3D8H6	6.8e-13	49.44	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]

BLAST of CSPI04G27610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55571.1	7.6e-67	100.00	hypothetical protein Csa_012627 [Cucumis sativus]	[more]
TYK01842.1	6.1e-56	86.92	hypothetical protein E5676_scaffold113G00900 [Cucumis melo var. makuwa]	[more]
KAA0052276.1	1.4e-55	86.15	hypothetical protein E6C27_scaffold207G001040 [Cucumis melo var. makuwa]	[more]
KAG6608012.1	1.2e-35	63.24	hypothetical protein SDJN03_01354, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940822.1	2.6e-35	63.24	uncharacterized protein LOC111446301 [Cucurbita moschata]	[more]

BLAST of CSPI04G27610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19430.1	2.7e-09	36.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G27610.1	CSPI04G27610.1	mRNA