CSPI04G26000 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G26000
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transmembrane protein
Location	Chr4: 23252654 .. 23253637 (+)
RNA-Seq Expression	CSPI04G26000
Synteny	CSPI04G26000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGAGCATCCAGGTCCATGATTTCATTGGAGCTTCTTCGACCGTGGATAATCGTACAAATCACAATATAGCTATTGCTCGGGCCGATCGGACGCCATTAACGATGGTCCATTACCTTGCATCTTCTTCACTACGGTATGTTTACTACAGTTCTAATTTTCATTGTTCACTACTTTTACTTTCTCATCCGAGCTAGCAAATCAGGTGAATATGAACTTTTCGTTTACAAGCCAGGAGGTACCGTAATCCCGATCTATCTCCATCTGCAATGGCGAACAAACACAATGTTGACTCAAGACCGTGGATTCTCGATGTCGTCCCTTTTATCGTTGTTATTCTAATTACGGCGCATGTTCTCGCTTTGGTACTTAAATCTCAATTTCAACCTCCATTTTTTCATTCTATTACACAGCCGTTTCATGTGCGAAATTCATCATTTGATATCGGAGTGTTTGTGTTAGGTCTACTGGATTTACAGATTAGTGACGGATAACAGGCCTCAAAGGAGGAAAGCACATTGAAGAACAGTTTGATTTACTTGACGGAAGATAAGAAGGTTAGTGGAACCCTAATTCGTTGAATGTTTTTGAAGTTCATAGCTGCAATGCTAACAGAAAAACGTGTTTGGTACCATTTTTATTACTGGCTACTGTACCTAACAGTCGTGAATGATATATAACAGATCCTTTCTTTAATGTCGATTGAATTAGGTTGCCTCCTCTGTTCAAGTGTTCATCATTTGATCTGATTGATCTGTTTATTTGTAGCCGATTCTCTAGTTTTCCGCTACGTTTTGTAGAGATATCAAACCGTTTCTTCAATTTTTAGTTGTCAAGGCCTACAGTAAAGTAAAAGTGAACATAGTGTACATCTGTAGGAGCAATGTTAGAAACTTATAATGGTCAATAAAGGTTGCGATATTCAATGAATGGTTAAACTTAACCATTCAATTTCGAGGGAATTATGAAAATGAAGATGGATTGT

mRNA sequence

CGAGAGCATCCAGGTCCATGATTTCATTGGAGCTTCTTCGACCGTGGATAATCGTACAAATCACAATATAGCTATTGCTCGGGCCGATCGGACGCCATTAACGATGGTCCATTACCTTGCATCTTCTTCACTACGGTGAATATGAACTTTTCGTTTACAAGCCAGGAGGTACCGTAATCCCGATCTATCTCCATCTGCAATGGCGAACAAACACAATGTTGACTCAAGACCGTGGATTCTCGATGTCGTCCCTTTTATCGTTGTTATTCTAATTACGGCGCATGTTCTCGCTTTGGTCTACTGGATTTACAGATTAGTGACGGATAACAGGCCTCAAAGGAGGAAAGCACATTGAAGAACAGTTTGATTTACTTGACGGAAGATAAGAAGGTTAGTGGAACCCTAATTCGTTGAATGTTTTTGAAGTTCATAGCTGCAATGCTAACAGAAAAACGTGTTTGGTACCATTTTTATTACTGGCTACTGTACCTAACAGTCGTGAATGATATATAACAGATCCTTTCTTTAATGTCGATTGAATTAGGTTGCCTCCTCTGTTCAAGTGTTCATCATTTGATCTGATTGATCTGTTTATTTGTAGCCGATTCTCTAGTTTTCCGCTACGTTTTGTAGAGATATCAAACCGTTTCTTCAATTTTTAGTTGTCAAGGCCTACAGTAAAGTAAAAGTGAACATAGTGTACATCTGTAGGAGCAATGTTAGAAACTTATAATGGTCAATAAAGGTTGCGATATTCAATGAATGGTTAAACTTAACCATTCAATTTCGAGGGAATTATGAAAATGAAGATGGATTGT

Coding sequence (CDS)

ATGGCGAACAAACACAATGTTGACTCAAGACCGTGGATTCTCGATGTCGTCCCTTTTATCGTTGTTATTCTAATTACGGCGCATGTTCTCGCTTTGGTCTACTGGATTTACAGATTAGTGACGGATAACAGGCCTCAAAGGAGGAAAGCACATTGA

Protein sequence

MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH*

Homology

[Close]

BLAST of CSPI04G26000 vs. ExPASy TrEMBL
Match: A0A0A0L5I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH
Sbjct: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. ExPASy TrEMBL
Match: A0A1S3BWH4 (uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-19
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
           MAN+ NVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 144

[Close]

BLAST of CSPI04G26000 vs. ExPASy TrEMBL
Match: A0A6J1F6U7 (uncharacterized protein LOC111442654 OS=Cucurbita moschata OX=3662 GN=LOC111442654 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MAN+  VDSRPWILDVVPFIVVILI AHVLALVYWIYRL TDNRPQRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. ExPASy TrEMBL
Match: A0A6J1IQM9 (uncharacterized protein LOC111477303 OS=Cucurbita maxima OX=3661 GN=LOC111477303 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MAN+  VDSRPWILDVVPFIV ILI AHVLALVYWIYRL T+NRPQRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVAILIAAHVLALVYWIYRLATENRPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. ExPASy TrEMBL
Match: A0A2P5DIT2 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MAN+    +RPW+LDVVP IVV+LI  HV ALVYWIYRL T+ +PQRRKAH
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. NCBI nr
Match: XP_008453078.1 (PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 8.9e-19
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
           MAN+ NVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH
Sbjct: 94  MANQQNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 144

[Close]

BLAST of CSPI04G26000 vs. NCBI nr
Match: XP_022935881.1 (uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935883.1 uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935884.1 uncharacterized protein LOC111442654 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 4.9e-17
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MAN+  VDSRPWILDVVPFIVVILI AHVLALVYWIYRL TDNRPQRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. NCBI nr
Match: XP_023535177.1 (uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535179.1 uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MAN+  VDSRPWILD VPFIVVILI AHVLALVYWIYRL TDNRPQRRKAH
Sbjct: 1  MANQQQVDSRPWILDAVPFIVVILIAAHVLALVYWIYRLATDNRPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. NCBI nr
Match: XP_022977153.1 (uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977154.1 uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977155.1 uncharacterized protein LOC111477303 [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 1  MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
          MAN+  VDSRPWILDVVPFIV ILI AHVLALVYWIYRL T+NRPQRRKAH
Sbjct: 1  MANQQQVDSRPWILDVVPFIVAILIAAHVLALVYWIYRLATENRPQRRKAH 51

[Close]

BLAST of CSPI04G26000 vs. NCBI nr
Match: KAG7037665.1 (hypothetical protein SDJN02_01295, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 6.0e-15
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1   MANKHNVDSRPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRKAH 52
           MAN+  VDSRPWILD+VPFIVVILI AHVLAL YWIYRL TDNR QRRKAH
Sbjct: 63  MANQQQVDSRPWILDLVPFIVVILIAAHVLALGYWIYRLATDNRAQRRKAH 113

[Close]

BLAST of CSPI04G26000 vs. TAIR 10
Match: AT5G10745.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-08
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 10 RPWILDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRK 50
          RPW LD+VP +VV+L  AHV+AL YWIYRL TD R Q ++
Sbjct: 8  RPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQR 47

[Close]

BLAST of CSPI04G26000 vs. TAIR 10
Match: AT5G24980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10745.1); Has 32 Blast hits to 32 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 1.9e-06
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 0


Query: 14 LDVVPFIVVILITAHVLALVYWIYRLVTDNRPQRRK 50
          +D+VP +VV L   HV+ALVYWIYRL +D  PQR+K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

The following BLAST results are available for this feature:

BLAST of CSPI04G26000 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G26000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5I3	1.8e-20	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G651730 PE=4 SV=1	[more]
A0A1S3BWH4	4.3e-19	96.08	uncharacterized protein LOC103493902 OS=Cucumis melo OX=3656 GN=LOC103493902 PE=...	[more]
A0A6J1F6U7	2.4e-17	90.20	uncharacterized protein LOC111442654 OS=Cucurbita moschata OX=3662 GN=LOC1114426...	[more]
A0A6J1IQM9	2.0e-16	86.27	uncharacterized protein LOC111477303 OS=Cucurbita maxima OX=3661 GN=LOC111477303...	[more]
A0A2P5DIT2	1.9e-11	68.63	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4...	[more]

BLAST of CSPI04G26000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453078.1	8.9e-19	96.08	PREDICTED: uncharacterized protein LOC103493902 [Cucumis melo]	[more]
XP_022935881.1	4.9e-17	90.20	uncharacterized protein LOC111442654 [Cucurbita moschata] >XP_022935882.1 unchar...	[more]
XP_023535177.1	1.4e-16	88.24	uncharacterized protein LOC111796681 [Cucurbita pepo subsp. pepo] >XP_023535178....	[more]
XP_022977153.1	4.2e-16	86.27	uncharacterized protein LOC111477303 [Cucurbita maxima] >XP_022977154.1 uncharac...	[more]
KAG7037665.1	6.0e-15	84.31	hypothetical protein SDJN02_01295, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI04G26000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10745.1	1.2e-08	62.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G24980.1	1.9e-06	61.11	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35755:SF3	EXPRESSED PROTEIN	coord: 1..51
None	No IPR available	PANTHER	PTHR35755	PROTEIN, PUTATIVE-RELATED	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G26000.1	CSPI04G26000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane