CSPI04G22510 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G22510
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBED-type domain-containing protein
LocationChr4: 20791707 .. 20791976 (-)
RNA-Seq ExpressionCSPI04G22510
SyntenyCSPI04G22510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCATATTCAATCCGCTTTACAATGGGTGATCAAGGTTCAGCTTTGCGTGGAAGCACAGACAGGCAATGACTCTAGGCACAGGCTGAAGACCTTGAAAGAGTCCCTTCATGAAACTTCTCAAGGTCAGAGTGTGATGTCTGACTTGAACAGATATTTAGAAGGATCAGTGTTTCCTCGAAAATTCGATTTCAACTTAAACAAACATATTAAATTGATGAAAGGTCTACATGCAGAGGTAACCAATCTTGTCCATGATGGCTCGTGA

mRNA sequence

ATGATGCATATTCAATCCGCTTTACAATGGGTGATCAAGGTTCAGCTTTGCGTGGAAGCACAGACAGGCAATGACTCTAGGCACAGGCTGAAGACCTTGAAAGAGTCCCTTCATGAAACTTCTCAAGGTCAGAGTGTGATGTCTGACTTGAACAGATATTTAGAAGGATCAGTGTTTCCTCGAAAATTCGATTTCAACTTAAACAAACATATTAAATTGATGAAAGGTCTACATGCAGAGGTAACCAATCTTGTCCATGATGGCTCGTGA

Coding sequence (CDS)

ATGATGCATATTCAATCCGCTTTACAATGGGTGATCAAGGTTCAGCTTTGCGTGGAAGCACAGACAGGCAATGACTCTAGGCACAGGCTGAAGACCTTGAAAGAGTCCCTTCATGAAACTTCTCAAGGTCAGAGTGTGATGTCTGACTTGAACAGATATTTAGAAGGATCAGTGTTTCCTCGAAAATTCGATTTCAACTTAAACAAACATATTAAATTGATGAAAGGTCTACATGCAGAGGTAACCAATCTTGTCCATGATGGCTCGTGA

Protein sequence

MMHIQSALQWVIKVQLCVEAQTGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNLNKHIKLMKGLHAEVTNLVHDGS*
Homology
BLAST of CSPI04G22510 vs. ExPASy TrEMBL
Match: A0A6J1IN11 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477023 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T NDSR RLK   + LHETSQGQ+VMSDL++YLE  VFPR  DFN+
Sbjct: 541 TSNDSRDRLKGFDKFLHETSQGQNVMSDLDKYLEEPVFPRNCDFNI 586

BLAST of CSPI04G22510 vs. ExPASy TrEMBL
Match: A0A6J1FC74 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111442712 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T NDSR RLK   + LHETSQGQ+VMSDL++YLE  VFPR  DFN+
Sbjct: 541 TSNDSRDRLKGFDKFLHETSQGQNVMSDLDKYLEEPVFPRNCDFNI 586

BLAST of CSPI04G22510 vs. ExPASy TrEMBL
Match: A0A0A0L1Z7 (BED-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           TGN+SR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 739 TGNESRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 784

BLAST of CSPI04G22510 vs. ExPASy TrEMBL
Match: A0A1S4E4C0 (zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=3656 GN=LOC107992032 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 23  GNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           GNDSR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 540 GNDSRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 584

BLAST of CSPI04G22510 vs. ExPASy TrEMBL
Match: A0A5A7VEC8 (Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.9e-07
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 23  GNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           GNDSR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 538 GNDSRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 582

BLAST of CSPI04G22510 vs. NCBI nr
Match: KAG7024652.1 (Zinc finger BED domain-containing protein RICESLEEPER 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T NDSR RLK   + LHETSQGQ+VMSDL++YLE  VFPR  DFN+
Sbjct: 541 TSNDSRDRLKGFDKFLHETSQGQNVMSDLDKYLEEPVFPRNCDFNI 586

BLAST of CSPI04G22510 vs. NCBI nr
Match: KAG6591773.1 (Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T NDSR RLK   + LHETSQGQ+VMSDL++YLE  VFPR  DFN+
Sbjct: 541 TSNDSRDRLKGFDKFLHETSQGQNVMSDLDKYLEEPVFPRNCDFNI 586

BLAST of CSPI04G22510 vs. NCBI nr
Match: XP_022935970.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T NDSR RLK   + LHETSQGQ+VMSDL++YLE  VFPR  DFN+
Sbjct: 541 TSNDSRDRLKGFDKFLHETSQGQNVMSDLDKYLEEPVFPRNCDFNI 586

BLAST of CSPI04G22510 vs. NCBI nr
Match: XP_022976722.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima] >XP_022976723.1 zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           T NDSR RLK   + LHETSQGQ+VMSDL++YLE  VFPR  DFN+
Sbjct: 541 TSNDSRDRLKGFDKFLHETSQGQNVMSDLDKYLEEPVFPRNCDFNI 586

BLAST of CSPI04G22510 vs. NCBI nr
Match: XP_011654029.1 (zinc finger BED domain-containing protein RICESLEEPER 1 [Cucumis sativus] >XP_031739904.1 zinc finger BED domain-containing protein RICESLEEPER 1 [Cucumis sativus] >XP_031739905.1 zinc finger BED domain-containing protein RICESLEEPER 1 [Cucumis sativus] >KGN55554.2 hypothetical protein Csa_012163 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-07
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 22  TGNDSRHRLKTLKESLHETSQGQSVMSDLNRYLEGSVFPRKFDFNL 68
           TGN+SR RLK   + LHETSQ QSVMSDL++YLE  VFPR  DFN+
Sbjct: 541 TGNESRDRLKGFDKFLHETSQSQSVMSDLDKYLEEPVFPRNCDFNI 586

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IN112.3e-0767.39zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita maxima... [more]
A0A6J1FC742.3e-0767.39zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucurbita moscha... [more]
A0A0A0L1Z73.0e-0767.39BED-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G624400 PE... [more]
A0A1S4E4C03.9e-0768.89zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo OX=... [more]
A0A5A7VEC83.9e-0768.89Zinc finger BED domain-containing protein RICESLEEPER 1-like OS=Cucumis melo var... [more]
Match NameE-valueIdentityDescription
KAG7024652.14.7e-0767.39Zinc finger BED domain-containing protein RICESLEEPER 1 [Cucurbita argyrosperma ... [more]
KAG6591773.14.7e-0767.39Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argy... [more]
XP_022935970.14.7e-0767.39zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita moschata... [more]
XP_022976722.14.7e-0767.39zinc finger BED domain-containing protein RICESLEEPER 1-like [Cucurbita maxima] ... [more]
XP_011654029.16.1e-0767.39zinc finger BED domain-containing protein RICESLEEPER 1 [Cucumis sativus] >XP_03... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G22510.1CSPI04G22510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding