CSPI04G21880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G21880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ankyrin repeat and zinc finger domain-containing protein 1
Location	Chr4: 20378869 .. 20379605 (-)
RNA-Seq Expression	CSPI04G21880
Synteny	CSPI04G21880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTCTCTAAATCGTTTTCCTCTTTGAACCTCACTTTGCCGACTAATCCATTAGATTCGAACAGTCACACTCGACCTCTCCAAATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCCAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGTAAACTCCTTCGTTCTCCACACTCATACACATCACCAACTAGTGGCGACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGATACAATATAACTTTTTTTTTTGTTGATTTTGTTATCTGATATTTGAATTTCAGTTTTTTTTTTCTTTTTTGCCCCAATTTAACTAGCTGACTGAGTAGAATGTCTCAGTTATTGAATTATCATGTCAAGCGTCCATTTTTGTTTAAATGTTTATAGACATCAAAGTTGAAATTTAGTTGTTGACATGCTTTTGATGAACTGAATGGTTTCTTAATTTTTATGTTCTATGTGAAAGATGGAGAGAGTTAGACACATTATATGTGGTCTAGGGAAGTGTAATA

mRNA sequence

CCTTTCTCTAAATCGTTTTCCTCTTTGAACCTCACTTTGCCGACTAATCCATTAGATTCGAACAGTCACACTCGACCTCTCCAAATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCCAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGTAAACTCCTTCGTTCTCCACACTCATACACATCACCAACTAGTGGCGACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGATACAATATAACTTTTTTTTTTGTTGATTTTGTTATCTGATATTTGAATTTCAGTTTTTTTTTTCTTTTTTGCCCCAATTTAACTAGCTGACTGAGTAGAATGTCTCAGTTATTGAATTATCATGTCAAGCGTCCATTTTTGTTTAAATGTTTATAGACATCAAAGTTGAAATTTAGTTGTTGACATGCTTTTGATGAACTGAATGGTTTCTTAATTTTTATGTTCTATGTGAAAGATGGAGAGAGTTAGACACATTATATGTGGTCTAGGGAAGTGTAATA

Coding sequence (CDS)

ATGCCAGCGACTACTCCAAATGTTTCTCGAGGAAATCAACCCAAGGCCATGGAGACCAATCCCACCGCCTCCGTCGTCGTTGGCGACAATACTCCAGCCACCCTATCAAAGAAACGTAACCGTTCTATCTTTGACGTTTCAGCTGACTTCTTTGATTTCTGTAAACTCCTTCGTTCTCCACACTCATACACATCACCAACTAGTGGCGACATCAGGGACATCCCAAGCGTTGAAAACACAATCGATTCGGAGCAAAACTCTAGAGATTTCAAAGAAAGTTTCGTCGCCCATCGGTGGATCTACAACATATGCAAGGCTGAATTAAAGTCCCTCCTTGACCAGGGTTCGCATTTCAAATCCGACATTCACTGA

Protein sequence

MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH*

Homology

[Close]

BLAST of CSPI04G21880 vs. ExPASy TrEMBL
Match: A0A0A0L1Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G617360 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSPTSGDIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTS  SG+IRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]

BLAST of CSPI04G21880 vs. ExPASy TrEMBL
Match: A0A5A7U602 (Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G002470 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. ExPASy TrEMBL
Match: A0A5D3D037 (Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004120 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. ExPASy TrEMBL
Match: A0A1S3AW96 (ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103483337 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. ExPASy TrEMBL
Match: A0A0A0L7L2 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G125000 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.4e-37
Identity = 82/107 (76.64%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: KGN54969.1 (hypothetical protein Csa_012656 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.5e-61
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60
           MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP
Sbjct: 1   MPATTPNVSRGNQPKAMETNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSP 60

Query: 61  HSYTSPTSGDIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120
           HSYTS  SG+IRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS
Sbjct: 61  HSYTSQPSGNIRDIPSVENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKS 120

Query: 121 DIH 124
           DIH
Sbjct: 121 DIH 123

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: XP_008438141.1 (PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: KAA0049021.1 (ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: TYK17543.1 (ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-40
Identity = 85/107 (79.44%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           METNP AS V+  NTPA   +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METNPAASAVIVSNTPAIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDSPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
            ENT+DSEQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AENTVDSEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. NCBI nr
Match: XP_011650787.1 (ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >XP_031739200.1 ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >XP_031739201.1 ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >KGN56582.1 hypothetical protein Csa_009543 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 82/107 (76.64%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 17  METNPTASVVVGDNTPATLSKKRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPS 76
           MET P AS VV  NTP    +KRNRSIFDV ADFFD CKLLRSPHSYTSPTSG  RD PS
Sbjct: 1   METIPAASAVVVSNTPPIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSPTSGSNRDGPS 60

Query: 77  VENTIDSEQNSRDFKESFVAHRWIYNICKAELKSLLDQGSHFKSDIH 124
             NT+D EQNSRDFKES VAHRW  NICKAE +SLLDQ SHFKSDIH
Sbjct: 61  AVNTVDLEQNSRDFKESSVAHRWTCNICKAEFESLLDQRSHFKSDIH 107

[Close]

BLAST of CSPI04G21880 vs. TAIR 10
Match: AT1G01930.1 (zinc finger protein-related )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 39/88 (44.32%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 38  KRNRSIFDVSADFFDFCKLLRSPHSYTSPTSGDIRDIPSVENTIDSEQNSRD--FKESFV 97
           K+ RSIFD++ADFFD C+L  S  S T    G          T D E+   D   K+  +
Sbjct: 18  KQPRSIFDLTADFFDSCRL--SNPSETQSAFGP-------PKTFDPEEAEEDKSSKDGVI 77

Query: 98  AHRWIYNICKAELKSLLDQGSHFKSDIH 124
             RW  N CK E  SL DQ  HFKSDIH
Sbjct: 78  LDRWTCNTCKIEFLSLQDQRYHFKSDIH 96

The following BLAST results are available for this feature:

BLAST of CSPI04G21880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G21880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1Q2	1.7e-61	97.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G617360 PE=4 SV=1	[more]
A0A5A7U602	3.6e-40	79.44	Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. ...	[more]
A0A5D3D037	3.6e-40	79.44	Ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo var. ...	[more]
A0A1S3AW96	3.6e-40	79.44	ankyrin repeat and zinc finger domain-containing protein 1 OS=Cucumis melo OX=36...	[more]
A0A0A0L7L2	6.4e-37	76.64	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G125...	[more]

BLAST of CSPI04G21880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54969.1	3.5e-61	97.56	hypothetical protein Csa_012656 [Cucumis sativus]	[more]
XP_008438141.1	7.5e-40	79.44	PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis m...	[more]
KAA0049021.1	7.5e-40	79.44	ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. ma...	[more]
TYK17543.1	7.5e-40	79.44	ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis melo var. ma...	[more]
XP_011650787.1	1.3e-36	76.64	ankyrin repeat and zinc finger domain-containing protein 1 [Cucumis sativus] >XP...	[more]

BLAST of CSPI04G21880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01930.1	1.3e-10	44.32	zinc finger protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21880.1	CSPI04G21880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding