CSPI04G19520 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G19520
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 17312045 .. 17312281 (+)
RNA-Seq Expression	CSPI04G19520
Synteny	CSPI04G19520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAACCGTGTGGAAGTTCACATATGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATTGA

mRNA sequence

ATGTTGAAACCGTGTGGAAGTTCACATATGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATTGA

Coding sequence (CDS)

ATGTTGAAACCGTGTGGAAGTTCACATATGAGTCCGCTGGAGCGTAGACTCGCCAGAAGAGAGGAAGAAGAAGCCACACAGGCTACCATTCAAGGCAAACGCTGGAATTCGCCGGAAATTGAAGTTACCGATGCTCGTGAGTGCGGATACTGTCGTAACGCCGTCGAAGAAGACACGAACCTCTTTCGTGCGTGGGTTACGCGGGCGATGGTGGAGCAGCGGCATCCAGTTCATTGA

Protein sequence

MLKPCGSSHMSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTNLFRAWVTRAMVEQRHPVH*

Homology

[Close]

BLAST of CSPI04G19520 vs. ExPASy TrEMBL
Match: A0A0A0KYI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G439070 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.8e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MLKPCGSSHMSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSH+SPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVH 79
          LFRAWVTRAMVEQRHPVH
Sbjct: 61 LFRAWVTRAMVEQRHPVH 78

[Close]

BLAST of CSPI04G19520 vs. ExPASy TrEMBL
Match: A0A5A7V9C8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00830 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MLKPCGSSHMSPLERRLARREEEEATQATIQGKRWNSPEIEVTDAREC 49
           MLK CGSSH+SPLERRLARR+ EEAT ATIQGKR NSPEIEV DAR C
Sbjct: 65  MLKLCGSSHLSPLERRLARRKGEEATHATIQGKRRNSPEIEVADARGC 112

[Close]

BLAST of CSPI04G19520 vs. NCBI nr
Match: KGN54740.1 (hypothetical protein Csa_012420 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 3.8e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MLKPCGSSHMSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60
          MLKPCGSSH+SPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN
Sbjct: 1  MLKPCGSSHLSPLERRLARREEEEATQATIQGKRWNSPEIEVTDARECGYCRNAVEEDTN 60

Query: 61 LFRAWVTRAMVEQRHPVH 79
          LFRAWVTRAMVEQRHPVH
Sbjct: 61 LFRAWVTRAMVEQRHPVH 78

[Close]

BLAST of CSPI04G19520 vs. NCBI nr
Match: KAA0062485.1 (uncharacterized protein E6C27_scaffold130G00790 [Cucumis melo var. makuwa] >TYK27399.1 uncharacterized protein E5676_scaffold325G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MLKPCGSSHMSPLERRLARREEEEATQATIQGKRWNSPEIEVTDAREC 49
           MLK CGSSH+SPLERRLARR+ EEAT ATIQGKR NSPEIEV DAR C
Sbjct: 65  MLKLCGSSHLSPLERRLARRKGEEATHATIQGKRRNSPEIEVADARGC 112

The following BLAST results are available for this feature:

BLAST of CSPI04G19520 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G19520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYI6	1.8e-37	98.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G439070 PE=4 SV=1	[more]
A0A5A7V9C8	1.3e-11	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI04G19520 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54740.1	3.8e-37	98.72	hypothetical protein Csa_012420 [Cucumis sativus]	[more]
KAA0062485.1	2.7e-11	83.33	uncharacterized protein E6C27_scaffold130G00790 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of CSPI04G19520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G19520.1	CSPI04G19520.1	mRNA