CSPI04G18780 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G18780
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein 5, chloroplastic
Location	Chr4: 16312687 .. 16314626 (-)
RNA-Seq Expression	CSPI04G18780
Synteny	CSPI04G18780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTGGACAAGAAATAAAGTAAAATTAAATTCTGAATGTATATTCAAAATGTTATACAAAAGCTTATCCGAACGTAAGCGAGGGGCTCCCAGTTCACACCATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTATGTCTCTCTTCCTCAACTTTCCTTTCCCTTCCTCTGCTCGACGGGATCGAATGAACTTTTTTGTCTAATTCTTATTCCTATCTACATTTCTCTTTCTACTTCATTGTTTGTTGTACGATTTATTCAAATGGGTAATTCCTTTTTTCTCCAACTCGGAAAACTATGTGGTGCTTCAGACAATTTTCTTGCTTCCACTCATTTGTCCGTCAGGCATTTTGTCAAACAGTTGGACTCGATTTTTTAAGCTTCTCTTTTGATGTGCACTAGATCTCGCTCTCGCTTGCCTGAATGTGTTTTTGTTCTGTATCTTGTGTTTTATAGGCTGATTGCTCTCTTTCTTGTTGATTGTCCTCAATTTCACATATACTTTACAAGTTTCCTTGTCTTGAAATACGGTTGAATTTCTTTGAAGAGAGATTGCTTTGAGTGAATTTCATGAATATTAATTTGATTCATATAATATCAAATAGGAGAAATTAACATTATCAGGATCCCTAGCCCCCCACGCTGTGATAGATTACATATTAAAAAACGAACTCAATCAAAAGCCTTTTAAATAGATTACAGTCTATTTATTCTTTGGTTACATTACAACTAAACAAGCTATTTAAACTTGGTTTATATTGATAAAAGAAAGTATTACAAGCTTCTTGGCGAAACTTTTAAAGTTTTTTTACTAACTAATGGTCTATTAAGTGTTTAATACGTCTCTAAACTTTTAATATTGTTTACGGTAGATTTCTAAGTTTTAAACAATATCTAGTAGGTCTTTAAAATATTAGTCTTAAACTTTCAACTGTCTTTATTTGGCTCTGAATTTGTATAGAGATCTCATGTATCAGGTTTACAATCTATTAAACACTCTTTTAAATTAAGGGATCTCTTAGACACAATTCGATAAGCTTAGAGACCAAAATAATACATATTCTTGGCTTTCATTGGAATGATTATTTCCTTGCACTTTATGAATCTCAGTCTAATTTCTATTCCTTTATTGTGGTTTCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGATAATCTTGAGCTCCTTGAATTCAATTCTTGCAGTTTTCAGTTCTAGAGGTGCCATTTCTCCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTCTTCTTAGTTTTGAACGACTAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTTATTGGTAATCTTGCTAAAAAAAACCTTGCACAAAGGCATTGTCTTAGAAACTTAGACTAAGATGAAATTGCACGTCGAGATGAATCCCCCCCAGGGAGGAGTTTGAGCTTGACG

mRNA sequence

GTTTTTGGACAAGAAATAAAGTAAAATTAAATTCTGAATGTATATTCAAAATGTTATACAAAAGCTTATCCGAACGTAAGCGAGGGGCTCCCAGTTCACACCATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGATAATCTTGAGCTCCTTGAATTCAATTCTTGCAGTTTTCAGTTCTAGAGGTGCCATTTCTCCTCATCGCTTCCAATTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTCTTAATATACCTGAAAGGATCCAGTGAGTAATGAAATGTGCAAATTCTTCTTAGTTTTGAACGACTAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAGATTTTTATTGGTAATCTTGCTAAAAAAAACCTTGCACAAAGGCATTGTCTTAGAAACTTAGACTAAGATGAAATTGCACGTCGAGATGAATCCCCCCCAGGGAGGAGTTTGAGCTTGACG

Coding sequence (CDS)

ATGGCTTCCTTTCTCCTCAGCTCCAATCCCCTCTCCACCTCTTTCCATTTCTCTACGTCCCCGTCGCCGTCATGTTTTCCTCCGACTTCTGCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACACTTTAATGGAGTCCGGCTACGAAACCACTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGACTGATGCTACGGGAGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAGGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAACGTTTGA

Protein sequence

MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV*

Homology

[Close]

BLAST of CSPI04G18780 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 51  GVRLRNHSFV----ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESK 110
           G RL  H  V      T   +V AA+E  A  + D S+V+ A      ++ V  LPLESK
Sbjct: 42  GQRLVAHGPVIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEA------NISVQNLPLESK 101

Query: 111 LQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           LQ +LEQK +MK+AKKIRLRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 102 LQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of CSPI04G18780 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 72/156 (46.15%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S  
Sbjct: 1   MALLCFNSLPSLSSL---SSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLN 60

Query: 61  ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARM 120
            +   +VVKAA+      E +S E      A    VPVDKLPLESK  +    LE + +M
Sbjct: 61  SSHGRIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 121 KLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of CSPI04G18780 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-14
Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 17  FSTSP---SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASE 76
           F+T+P   S S FP  +A P S +    IG       G R+      +   + +  A++ 
Sbjct: 9   FTTTPVTSSSSLFPHPTANPISRV---RIGLPTNCLKGFRILTPIVQKPRKNSIFIASAA 68

Query: 77  TDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQK 136
             A         +  ++ + + V VDKLPLESKL+ER E+  +MKLAKKIRL+RKRLVQK
Sbjct: 69  AGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQK 128

Query: 137 RHLRKKGRWPPSKMKKLKNV 154
           R LRKKG WPPSKMKKL+ V
Sbjct: 129 RRLRKKGNWPPSKMKKLEGV 145

[Close]

BLAST of CSPI04G18780 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-71
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGETDSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of CSPI04G18780 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.4e-64
Identity = 144/153 (94.12%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of CSPI04G18780 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.5e-56
Identity = 130/156 (83.33%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 3   SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNH 62
           +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  SFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENTASL+VKA SE D TGETDS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CSPI04G18780 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-54
Identity = 128/158 (81.01%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N SFVENT S +VKAASE DATGETDS+E +P AEAKKEDV VDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of CSPI04G18780 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 126/156 (80.77%), Postives = 134/156 (85.90%), Query Frame = 0


Query: 3   SFLLSSNPLSTSFHFST-----SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNH 62
           +FLL SNPLS S H ST     SPSPSCFP   +  +SM LMKP GFQPKHFNGVRLRN 
Sbjct: 2   AFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRNP 61

Query: 63  SFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENT S +VKAASE D TGETDS+E +P+AEAKKEDVPVDKLPLESKLQERLEQKARM
Sbjct: 62  SFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKARM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CSPI04G18780 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 2.1e-71
Identity = 152/153 (99.35%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGETDSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]

BLAST of CSPI04G18780 vs. NCBI nr
Match: XP_008455762.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 254.2 bits (648), Expect = 7.1e-64
Identity = 144/153 (94.12%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MASFLL SNPLSTSFHFST     CFPPTSAIPSSMLLMKPIGFQPK FNGVRLRNH FV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASETDATGE DSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]

BLAST of CSPI04G18780 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-58
Identity = 137/158 (86.71%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFH---FS--TSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 60
           MASFLL SNPLSTS H   FS   SPSPSCFP TSA PS MLLMKPIGFQPKHFNGVRL 
Sbjct: 1   MASFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLG 60

Query: 61  NHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 120
             SFVEN ASL+VKAASE DA G+TDSSE QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 61  KPSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]

BLAST of CSPI04G18780 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 227.3 bits (578), Expect = 9.3e-56
Identity = 130/156 (83.33%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 3   SFLLSSNPLSTS-----FHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNH 62
           +FLL SNPLSTS     F  S SPSPSCFP TSA PSS+LLM+P+GFQPK FNGVRLRN 
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  SFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENTASL+VKA SE D TGETDS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]

BLAST of CSPI04G18780 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-55
Identity = 129/158 (81.65%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 3   SFLLSSNPLSTSFHFST-------SPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLR 62
           +FLL SNPLS S H ST       SPSPSCFP   A  +SMLLMKP GFQPKHFNGVRLR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NHSFVENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N SFVENT S  VKAASE DATGETDS+E +P+AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]

BLAST of CSPI04G18780 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 72/156 (46.15%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60
           MA    +S P  +S    +S S S    + +  S +L +KP   + K  N V L  +S  
Sbjct: 1   MALLCFNSLPSLSSL---SSSSSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLN 60

Query: 61  ENTASLVVKAASETDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARM 120
            +   +VVKAA+      E +S E      A    VPVDKLPLESK  +    LE + +M
Sbjct: 61  SSHGRIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKM 120

Query: 121 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 121 KLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of CSPI04G18780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27684	3.7e-15	54.21	50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
Q9LER7	1.8e-14	46.15	50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ...	[more]
P11891	1.8e-14	44.29	50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV...	[more]

BLAST of CSPI04G18780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3F4	1.0e-71	99.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1	[more]
A0A1S3C2X0	3.4e-64	94.12	50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P...	[more]
A0A6J1DNT9	4.5e-56	83.33	50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GE62	1.9e-54	81.01	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HS41	3.2e-54	80.77	50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CSPI04G18780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144312.1	2.1e-71	99.35	50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot...	[more]
XP_008455762.1	7.1e-64	94.12	PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo]	[more]
XP_038881132.1	4.5e-58	86.71	50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r...	[more]
XP_022154476.1	9.3e-56	83.33	50S ribosomal protein 5, chloroplastic [Momordica charantia]	[more]
XP_023543496.1	7.9e-55	81.65	50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI04G18780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56910.1	1.3e-15	46.15	plastid-specific 50S ribosomal protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..153
None	No IPR available	PANTHER	PTHR34678:SF1	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..153
IPR040307	50S ribosomal protein 5, chloroplastic	PANTHER	PTHR34678	50S RIBOSOMAL PROTEIN 5, CHLOROPLASTIC	coord: 5..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G18780.1	CSPI04G18780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome