CSPI04G14470 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G14470
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionATP synthase
LocationChr4: 12162998 .. 12164439 (+)
RNA-Seq ExpressionCSPI04G14470
SyntenyCSPI04G14470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTATAATAAGCGAACTGGTCTGAGCTTAGAAGAAATCCCCTTTTTTTCACTTGCGAAAGAGACGAACAAACGCAAACAGTCGAACGAAGATGAGGAAATTCGATCCATGGCCGGTGTTTTTCAGGCGAGAATGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACCGGCTCCTTAATTACCAAGATGACGGCTGGATTTACTGGTACGATCGTCGATTTAAATTCCTTCTCGATTTCCTCGTTTTCTTTGTTTTTGTTTGTTTTTTTTTTTTTTTTTTTTGGTTTATTTGAATCCTTCTCTTCTGTATGTTACTGATTATCTCGTGGATTAACTTTCAGAGGAAGAGGTGAAGAATTCTCCCTTCGTGCAGAGGCACAATCGGTATTTTCTCGGAACCCTAATCTCCGCACATATTCTTCGATTTGCATAACAATTAGATCTAGTATCTCATATGGTTTCGGTTTGTCTATGGATTTGTGGTTTTAGTCTGAAAAATCCACAAATCATTTGAAGATAATTGTAGATTTTGATATTGGGTTTCTGATTTCTGATTTGGGATTTCTACATTTACTTGCGTCTGGCAGTCACAAGTTGTTTTTATGCTGCTTATTTCTCACTAATGGCCATTCTTTTTAGTATAAATCTTGATTTGGTGGCGATTCAGTGAAGGCTAAAAATCCATCACATAATTTTAGTCATTTCTAGTGAGAATTAAGCTTTTTTACCATAATCTTGTAGTGATTAAGCTTCTTTTTTTCTAGATGTTATTGTAGAATCACATATATTGTTTTTGCATTCGAGCATACTTATATTTCTACAGCGGACAGATAGATTGTTGATTTAGAACATAGGAATGTGCTTGACAAGTTAATGCTGTGCCTGCTGCAGGTAAATCCTATAATGGGGGTATTACTGGCGTTGGAAAATGTGAGATGTTTTTCATTTGTGCAAAATAACAGATGCTGCAGTTAGTTTACCAGCCATTTGAATCAAGTTTTACTGGTACTTCTCAGTATGTATCAAAACTTGGATGGATTTTTTGTGATGTTGTTTACTTATATATGAACATGAATTCTTTTTCGTATCATCGTTGGATTGAAAGCTTTTCCCTTCTTTAATTTGGAATGGTAGAAACTTGTTCATGTACTGATTAGTACTTGTCGTATAAAAGCTTACATGAATATTTAGATTAGGTAACACTCTCATCTGGACTAATTCCTTGAAACAACTGGCTGAGATCGAGGAATTCATAGGACTTTTATTTGTCAGTAAGAGCAAAATGTTAGTAGTTTTGTTATTTCATTTTGGTGATGTTTGAAAAAGTATTCATATTCTTTGCTAGACATTCAAACTTAGAACAGTGGAAGCGTTTTTAAATAATAGATTGAAACAGTTATTTTGTATTGGGAAATCGTCTTGATTTGAAAGGAC

mRNA sequence

TATTTATAATAAGCGAACTGGTCTGAGCTTAGAAGAAATCCCCTTTTTTTCACTTGCGAAAGAGACGAACAAACGCAAACAGTCGAACGAAGATGAGGAAATTCGATCCATGGCCGGTGTTTTTCAGGCGAGAATGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACCGGCTCCTTAATTACCAAGATGACGGCTGGATTTACTGAGGAAGAGGTGAAGAATTCTCCCTTCGTGCAGAGGCACAATCGGTAAATCCTATAATGGGGGTATTACTGGCGTTGGAAAATGTGAGATGTTTTTCATTTGTGCAAAATAACAGATGCTGCAGTTAGTTTACCAGCCATTTGAATCAAGTTTTACTGGTACTTCTCAGTATGTATCAAAACTTGGATGGATTTTTTGTGATGTTGTTTACTTATATATGAACATGAATTCTTTTTCGTATCATCGTTGGATTGAAAGCTTTTCCCTTCTTTAATTTGGAATGGTAGAAACTTGTTCATGTACTGATTAGTACTTGTCGTATAAAAGCTTACATGAATATTTAGATTAGGTAACACTCTCATCTGGACTAATTCCTTGAAACAACTGGCTGAGATCGAGGAATTCATAGGACTTTTATTTGTCAGTAAGAGCAAAATGTTAGTAGTTTTGTTATTTCATTTTGGTGATGTTTGAAAAAGTATTCATATTCTTTGCTAGACATTCAAACTTAGAACAGTGGAAGCGTTTTTAAATAATAGATTGAAACAGTTATTTTGTATTGGGAAATCGTCTTGATTTGAAAGGAC

Coding sequence (CDS)

ATGAGGAAATTCGATCCATGGCCGGTGTTTTTCAGGCGAGAATGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACCGGCTCCTTAATTACCAAGATGACGGCTGGATTTACTGAGGAAGAGGTGAAGAATTCTCCCTTCGTGCAGAGGCACAATCGGTAA

Protein sequence

MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR*
Homology
[Close]
BLAST of CSPI04G14470 vs. ExPASy Swiss-Prot
Match: P80497 (ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.5e-06
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGF 26
          MR+FDPWPVFFRREW RN PFLV F
Sbjct: 1  MRQFDPWPVFFRREWSRNQPFLVXF 25

[Close]
BLAST of CSPI04G14470 vs. ExPASy TrEMBL
Match: A0A0A0KZI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. ExPASy TrEMBL
Match: A0A6J1IMH0 (uncharacterized protein LOC111478752 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478752 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. ExPASy TrEMBL
Match: A0A6J1IUR1 (uncharacterized protein LOC111478752 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478752 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. ExPASy TrEMBL
Match: A0A5A7SNJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00070 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+ ITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. ExPASy TrEMBL
Match: A0A1S3BIW2 (uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-24
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+ ITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. NCBI nr
Match: KAE8649524.1 (hypothetical protein Csa_017989, partial [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 3.1e-25
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR
Sbjct: 11 MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 65

[Close]
BLAST of CSPI04G14470 vs. NCBI nr
Match: XP_022978952.1 (uncharacterized protein LOC111478752 isoform X1 [Cucurbita maxima] >XP_023543215.1 uncharacterized protein LOC111803160 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 5.8e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. NCBI nr
Match: XP_022978953.1 (uncharacterized protein LOC111478752 isoform X2 [Cucurbita maxima] >XP_023543216.1 uncharacterized protein LOC111803160 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 5.8e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR+FDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRQFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. NCBI nr
Match: XP_008447675.1 (PREDICTED: uncharacterized protein LOC103490081 [Cucumis melo] >KAA0032622.1 uncharacterized protein E6C27_scaffold184G00070 [Cucumis melo var. makuwa] >TYK23504.1 uncharacterized protein E5676_scaffold500G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 7.6e-24
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+ ITKMTAGF+EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGAAITKMTAGFSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. NCBI nr
Match: XP_038881285.1 (uncharacterized protein LOC120072840 [Benincasa hispida])

HSP 1 Score: 119.4 bits (298), Expect = 9.9e-24
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MRKFDPWPVFFRREWKRNWPFLVGFAITG+LITKMTAG +EEEVKNSPFVQRHNR
Sbjct: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGTLITKMTAGLSEEEVKNSPFVQRHNR 55

[Close]
BLAST of CSPI04G14470 vs. TAIR 10
Match: AT3G46430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 7.6e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAG TEE+ KNS FVQ+H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

[Close]
BLAST of CSPI04G14470 vs. TAIR 10
Match: AT5G59613.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 7.6e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAG TEE+ KNS FVQ+H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

[Close]
BLAST of CSPI04G14470 vs. TAIR 10
Match: AT5G59613.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). )

HSP 1 Score: 99.8 bits (247), Expect = 7.6e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGSLITKMTAGFTEEEVKNSPFVQRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAG TEE+ KNS FVQ+H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

The following BLAST results are available for this feature:
BLAST of CSPI04G14470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P804971.5e-0684.00ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=411... [more]
BLAST of CSPI04G14470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZI31.5e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G294910 PE=4 SV=1[more]
A0A6J1IMH02.8e-2494.55uncharacterized protein LOC111478752 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IUR12.8e-2494.55uncharacterized protein LOC111478752 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5A7SNJ63.7e-2494.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BIW23.7e-2494.55uncharacterized protein LOC103490081 OS=Cucumis melo OX=3656 GN=LOC103490081 PE=... [more]
BLAST of CSPI04G14470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649524.13.1e-25100.00hypothetical protein Csa_017989, partial [Cucumis sativus][more]
XP_022978952.15.8e-2494.55uncharacterized protein LOC111478752 isoform X1 [Cucurbita maxima] >XP_023543215... [more]
XP_022978953.15.8e-2494.55uncharacterized protein LOC111478752 isoform X2 [Cucurbita maxima] >XP_023543216... [more]
XP_008447675.17.6e-2494.55PREDICTED: uncharacterized protein LOC103490081 [Cucumis melo] >KAA0032622.1 unc... [more]
XP_038881285.19.9e-2494.55uncharacterized protein LOC120072840 [Benincasa hispida][more]
BLAST of CSPI04G14470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G46430.17.6e-2276.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G59613.17.6e-2276.36unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G59613.27.6e-2276.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34565TRANSMEMBRANE PROTEINcoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G14470.1CSPI04G14470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane