CSPI04G06890 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G06890
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NDR1/HIN1-like protein 12
Location	Chr4: 4814240 .. 4815023 (-)
RNA-Seq Expression	CSPI04G06890
Synteny	CSPI04G06890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTTCATAACTCTAATGCTTTAGAAGCAGGAAAGGTAGAGATACCAAAACCATCTCTTTCAAATTCAAGTTTGTAATTCTTCAAACCAAAAATCTCAATTCAAAAGCCCACTCAAATTAACTCTCAATTTTCAAAACAATATTTCAATCTCCACCGCCGGATGTGGACCGCCCCCGCCCAATGCCACCCAAACTAATCTCCGACGCAAAGCGCCACACTCATCCCCTCGTTTGGCTCGCTGCCTTACTCTGCACCGTTGTTTCAATTGCCGTCATCATCGGAGGCATCGTCGTCTTCATCGGTTACCTAGTCATCCACCCTAGGATTCCCACCATCTCCATTCTCGACGCTCATCTCGACAACTTCCAAATTGACATCGCCGGTCGCCTCGAAGTTCAGTTAACGATCATCATTGAAGCGAAGAATGATAACGCGAAAGCTCATGCCAGTTTCTCGGATTCGAGTTTCTTCCTCCATTTCTTAGGGATCAAGATCGCACAACTTGTGGCGGATCCATTCGAAGTGAGGAAGAACAGTTCAATGAAATTCCCTTACGCTGTTGTTTCGAATTCAATTCCTCTGAATCCAGAGCAAATGGAGAGCGTTGATTCTGATTTGAAGGCAGATCTGAGTCGATTTGATTTGATAGGGAATACGAGAGTTCAATGGCGAGTTGGATTGCTTGGATCTGTGAAGTATGAATGTCATCTTCATTGTGGGCTTAAATTTCATCCTTCTAATGGAACTTATTTGAGTTCTCCATGCAGTTCCAGAGTTAAATGA

mRNA sequence

GAGTTCATAACTCTAATGCTTTAGAAGCAGGAAAGGTAGAGATACCAAAACCATCTCTTTCAAATTCAAGTTTGTAATTCTTCAAACCAAAAATCTCAATTCAAAAGCCCACTCAAATTAACTCTCAATTTTCAAAACAATATTTCAATCTCCACCGCCGGATGTGGACCGCCCCCGCCCAATGCCACCCAAACTAATCTCCGACGCAAAGCGCCACACTCATCCCCTCGTTTGGCTCGCTGCCTTACTCTGCACCGTTGTTTCAATTGCCGTCATCATCGGAGGCATCGTCGTCTTCATCGGTTACCTAGTCATCCACCCTAGGATTCCCACCATCTCCATTCTCGACGCTCATCTCGACAACTTCCAAATTGACATCGCCGGTCGCCTCGAAGTTCAGTTAACGATCATCATTGAAGCGAAGAATGATAACGCGAAAGCTCATGCCAGTTTCTCGGATTCGAGTTTCTTCCTCCATTTCTTAGGGATCAAGATCGCACAACTTGTGGCGGATCCATTCGAAGTGAGGAAGAACAGTTCAATGAAATTCCCTTACGCTGTTGTTTCGAATTCAATTCCTCTGAATCCAGAGCAAATGGAGAGCGTTGATTCTGATTTGAAGGCAGATCTGAGTCGATTTGATTTGATAGGGAATACGAGAGTTCAATGGCGAGTTGGATTGCTTGGATCTGTGAAGTATGAATGTCATCTTCATTGTGGGCTTAAATTTCATCCTTCTAATGGAACTTATTTGAGTTCTCCATGCAGTTCCAGAGTTAAATGA

Coding sequence (CDS)

ATGCCACCCAAACTAATCTCCGACGCAAAGCGCCACACTCATCCCCTCGTTTGGCTCGCTGCCTTACTCTGCACCGTTGTTTCAATTGCCGTCATCATCGGAGGCATCGTCGTCTTCATCGGTTACCTAGTCATCCACCCTAGGATTCCCACCATCTCCATTCTCGACGCTCATCTCGACAACTTCCAAATTGACATCGCCGGTCGCCTCGAAGTTCAGTTAACGATCATCATTGAAGCGAAGAATGATAACGCGAAAGCTCATGCCAGTTTCTCGGATTCGAGTTTCTTCCTCCATTTCTTAGGGATCAAGATCGCACAACTTGTGGCGGATCCATTCGAAGTGAGGAAGAACAGTTCAATGAAATTCCCTTACGCTGTTGTTTCGAATTCAATTCCTCTGAATCCAGAGCAAATGGAGAGCGTTGATTCTGATTTGAAGGCAGATCTGAGTCGATTTGATTTGATAGGGAATACGAGAGTTCAATGGCGAGTTGGATTGCTTGGATCTGTGAAGTATGAATGTCATCTTCATTGTGGGCTTAAATTTCATCCTTCTAATGGAACTTATTTGAGTTCTCCATGCAGTTCCAGAGTTAAATGA

Protein sequence

MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLDNFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSSMKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCGLKFHPSNGTYLSSPCSSRVK*

Homology

[Close]

BLAST of CSPI04G06890 vs. ExPASy TrEMBL
Match: A0A0A0KX91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.7e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYLSSPCSSRVK
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. ExPASy TrEMBL
Match: A0A5A7TFZ2 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00150 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.7e-101
Identity = 188/200 (94.00%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTI++EAKNDNAKAHASFSDSSFFLHFL IKIAQLVADPFEV+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. ExPASy TrEMBL
Match: A0A5D3D1V8 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002470 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 187/200 (93.50%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTI++EAKNDNAKAHASFSDSSFFLHFL IKIAQLVADPFEV+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. ExPASy TrEMBL
Match: A0A1S3BSH0 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 187/200 (93.50%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTI++EAKNDNAKAHASFSDSSFFLHFL IKIAQLVADPFEV+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. ExPASy TrEMBL
Match: A0A6J1ETW1 (uncharacterized protein LOC111437517 OS=Cucurbita moschata OX=3662 GN=LOC111437517 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.3e-91
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQ DIAGRLEVQLT++++A+NDNAKAHASFSD+SFFLHFLGIKIAQLVA  F+VRKNSS
Sbjct: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           +  PY V SNSIPL PEQME VD  LK+D+SRFDLIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTY S PCSSR K
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of CSPI04G06890 vs. NCBI nr
Match: XP_004150550.1 (uncharacterized protein LOC101214190 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 3.6e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG
Sbjct: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYLSSPCSSRVK
Sbjct: 181 LKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. NCBI nr
Match: KAA0040179.1 (NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 377.9 bits (969), Expect = 5.6e-101
Identity = 188/200 (94.00%), Postives = 192/200 (96.00%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTI++EAKNDNAKAHASFSDSSFFLHFL IKIAQLVADPFEV+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. NCBI nr
Match: XP_008451870.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK16449.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 4.7e-100
Identity = 187/200 (93.50%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQIDIAGRLEVQLTI++EAKNDNAKAHASFSDSSFFLHFL IKIAQLVADPFEV+KNSS
Sbjct: 61  NFQIDIAGRLEVQLTIVVEAKNDNAKAHASFSDSSFFLHFLEIKIAQLVADPFEVKKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           MKF YAV SNSIPLNPEQME+VD DLKADLS F LIGNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 MKFHYAVASNSIPLNPEQMETVDYDLKADLSPFTLIGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTYL SPCSSRVK
Sbjct: 181 LKFHPSNGTYLRSPCSSRVK 200

[Close]

BLAST of CSPI04G06890 vs. NCBI nr
Match: XP_038904240.1 (NDR1/HIN1-like protein 12 [Benincasa hispida])

HSP 1 Score: 357.8 bits (917), Expect = 6.0e-95
Identity = 175/200 (87.50%), Postives = 189/200 (94.50%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKR THPLVWLAA+LCTVVSIAVIIGGIV+FIGYLVIHPRIPT+S+LDAHL+
Sbjct: 1   MPPKLISDAKRRTHPLVWLAAVLCTVVSIAVIIGGIVIFIGYLVIHPRIPTVSVLDAHLN 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
            FQ D+AGRLEVQLTIIIEA+NDNAKAHASFSDSSFFL+F+G+KIAQL ADPFEVRKNSS
Sbjct: 61  KFQNDLAGRLEVQLTIIIEAENDNAKAHASFSDSSFFLYFIGMKIAQLKADPFEVRKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           +KF YAVVS+SIPLNPEQME VD+DLKADLS F L GNTRVQWRVGLLGSVKYECHLHC 
Sbjct: 121 LKFHYAVVSDSIPLNPEQMEKVDNDLKADLSGFVLTGNTRVQWRVGLLGSVKYECHLHCE 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTY+SSPCSSR K
Sbjct: 181 LKFHPSNGTYMSSPCSSRAK 200

[Close]

BLAST of CSPI04G06890 vs. NCBI nr
Match: XP_022931289.1 (uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 uncharacterized protein LOC111810341 [Cucurbita pepo subsp. pepo] >KAG6577108.1 hypothetical protein SDJN03_24682, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015110.1 hypothetical protein SDJN02_22743, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.0 bits (881), Expect = 8.9e-91
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = 0


Query: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60
           MPPKLISDAKR THPLVWLAALLCTVVSIAVIIGGIV+FIGYLVIHPR+P I ++DAHLD
Sbjct: 1   MPPKLISDAKRRTHPLVWLAALLCTVVSIAVIIGGIVIFIGYLVIHPRVPMIGVIDAHLD 60

Query: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSS 120
           NFQ DIAGRLEVQLT++++A+NDNAKAHASFSD+SFFLHFLGIKIAQLVA  F+VRKNSS
Sbjct: 61  NFQNDIAGRLEVQLTVVVKAENDNAKAHASFSDTSFFLHFLGIKIAQLVARDFDVRKNSS 120

Query: 121 MKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCG 180
           +  PY V SNSIPL PEQME VD  LK+D+SRFDLIG+TRVQWRVGLLGSVKY CHLHC 
Sbjct: 121 LMLPYVVPSNSIPLTPEQMEEVDYALKSDVSRFDLIGDTRVQWRVGLLGSVKYRCHLHCV 180

Query: 181 LKFHPSNGTYLSSPCSSRVK 201
           LKFHPSNGTY S PCSSR K
Sbjct: 181 LKFHPSNGTYFSPPCSSRAK 200

[Close]

BLAST of CSPI04G06890 vs. TAIR 10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-56
Identity = 106/198 (53.54%), Postives = 139/198 (70.20%), Query Frame = 0


Query: 3   PKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLDNF 62
           P+L S  +  T P +W AA++C ++SI VI+GGI+VF+GYLVIHPR+P IS+ DAHLD  
Sbjct: 2   PRLTS--RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFL 61

Query: 63  QIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSSMK 122
           + DI G L+ QLTI+I  +NDNAKAHA F ++ F L + G  IA L A  FEV K  SM 
Sbjct: 62  KYDIVGVLQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPEFEVVKEKSMF 121

Query: 123 FPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCGLK 182
            PY V S  IPLNP  M++VD  +K D+  F+L G +R +WRVG LGSVK+EC+L C L+
Sbjct: 122 LPYLVQSYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLR 181

Query: 183 FHPSNGTYLSSPCSSRVK 201
           F PS+ +Y+ SPC+S  K
Sbjct: 182 FRPSDHSYIPSPCTSAHK 197

[Close]

BLAST of CSPI04G06890 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 9.7e-19
Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 0


Query: 11  RHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLDNFQIDIAGRL 70
           R T+ + W AA  C +  + +I+GG+++ I YLV  PR P + I  A+L+   +D+   L
Sbjct: 167 RETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAAYLDMGFLL 226

Query: 71  EVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSSMKFPYAVVSN 130
              LTI+    N + K+   FS  +F L++    IA    +PF+V K +SM     +VS+
Sbjct: 227 NGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHLVSS 286

Query: 131 SIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCGLKFH-PSNGT 190
            + L   Q   +   ++      +L G    +  +G L    Y+ H HC +  + P  G 
Sbjct: 287 QVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHCSVSLNGPPLGA 346

Query: 191 YLSSPCSSR 199
             +  C+++
Sbjct: 347 MRARRCNTK 355

[Close]

BLAST of CSPI04G06890 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 9.4e-14
Identity = 48/189 (25.40%), Postives = 85/189 (44.97%), Query Frame = 0


Query: 11  RHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLDNFQIDIAGRL 70
           + T P+   A + C ++ I +I+ G+++ + YL   PR P   I  A L+   +D+   L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSSMKFPYAVVSN 130
              L +++   N + K+   FS   F L+F    IA    +PF V K  SM   + +VS+
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSS 247

Query: 131 SIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCGLKFH-PSNGT 190
            + +   Q + +   L       +L G    +  +G L    Y  H  C +  + P  GT
Sbjct: 248 QVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAGT 307

Query: 191 YLSSPCSSR 199
             +  C+++
Sbjct: 308 MRARRCNTK 316

[Close]

BLAST of CSPI04G06890 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-12
Identity = 46/180 (25.56%), Postives = 81/180 (45.00%), Query Frame = 0


Query: 20  AALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLDNFQIDIAGRLEVQLTIIIE 79
           A + C ++ I +I+ G+++ + YL   PR P   I  A L+   +D+   L   L +++ 
Sbjct: 5   ATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVN 64

Query: 80  AKNDNAKAHASFSDSSFFLHFLGIKIAQLVADPFEVRKNSSMKFPYAVVSNSIPLNPEQM 139
             N + K+   FS   F L+F    IA    +PF V K  SM   + +VS+ + +   Q 
Sbjct: 65  FTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQS 124

Query: 140 ESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHCGLKFH-PSNGTYLSSPCSSR 199
           + +   L       +L G    +  +G L    Y  H  C +  + P  GT  +  C+++
Sbjct: 125 QDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAGTMRARRCNTK 184

The following BLAST results are available for this feature:

BLAST of CSPI04G06890 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G06890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX91	1.7e-108	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056550 PE=4 SV=1	[more]
A0A5A7TFZ2	2.7e-101	94.00	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3D1V8	2.3e-100	93.50	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BSH0	2.3e-100	93.50	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103493029 PE=4 SV=1	[more]
A0A6J1ETW1	4.3e-91	83.00	uncharacterized protein LOC111437517 OS=Cucurbita moschata OX=3662 GN=LOC1114375...	[more]

BLAST of CSPI04G06890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150550.1	3.6e-108	100.00	uncharacterized protein LOC101214190 [Cucumis sativus]	[more]
KAA0040179.1	5.6e-101	94.00	NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008451870.1	4.7e-100	93.50	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >TYK16449.1 NDR1/HIN1-like p...	[more]
XP_038904240.1	6.0e-95	87.50	NDR1/HIN1-like protein 12 [Benincasa hispida]	[more]
XP_022931289.1	8.9e-91	83.00	uncharacterized protein LOC111437517 [Cucurbita moschata] >XP_023552821.1 unchar...	[more]

BLAST of CSPI04G06890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45320.1	5.8e-56	53.54	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G26350.1	9.7e-19	28.04	LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED ...	[more]
AT1G13050.1	9.4e-14	25.40	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13050.2	1.4e-12	25.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 7..200
None	No IPR available	PANTHER	PTHR31852:SF9	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 7..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06890.1	CSPI04G06890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane