CSPI03G23790 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G23790
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSNF1-related protein kinase regulatory subunit beta-2-like
LocationChr3: 20822537 .. 20822707 (+)
RNA-Seq ExpressionCSPI03G23790
SyntenyCSPI03G23790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACTGTGAACGCAAAGAAGACGGGGAATGTGAACGTCATAGGAGATGAGGAATTTGAGGCTGAAGAAGTCGGTGGCTGTCGAAGTAGTTTGCCAGATGGATTGTCTCCACCGTCCAACGTCCATCTTGGCTATCATGTAGATGATGATCCAACCCTGCGGAGTTGA

mRNA sequence

ATGGTGACTGTGAACGCAAAGAAGACGGGGAATGTGAACGTCATAGGAGATGAGGAATTTGAGGCTGAAGAAGTCGGTGGCTGTCGAAGTAGTTTGCCAGATGGATTGTCTCCACCGTCCAACGTCCATCTTGGCTATCATGTAGATGATGATCCAACCCTGCGGAGTTGA

Coding sequence (CDS)

ATGGTGACTGTGAACGCAAAGAAGACGGGGAATGTGAACGTCATAGGAGATGAGGAATTTGAGGCTGAAGAAGTCGGTGGCTGTCGAAGTAGTTTGCCAGATGGATTGTCTCCACCGTCCAACGTCCATCTTGGCTATCATGTAGATGATGATCCAACCCTGCGGAGTTGA

Protein sequence

MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDPTLRS*
Homology
BLAST of CSPI03G23790 vs. ExPASy TrEMBL
Match: A0A0A0LBM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444550 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDPTLRS 57
          MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPP N+HLGYHVDDDPTL S
Sbjct: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS 56

BLAST of CSPI03G23790 vs. ExPASy TrEMBL
Match: A0A0A0KH57 (AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-05
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGLS P + HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDPP 51

BLAST of CSPI03G23790 vs. ExPASy TrEMBL
Match: A0A5D3CKN6 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00280 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGL+ P + HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDPP 51

BLAST of CSPI03G23790 vs. ExPASy TrEMBL
Match: A0A1S3B352 (SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=3656 GN=LOC103485228 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGL+ P + HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDPP 51

BLAST of CSPI03G23790 vs. NCBI nr
Match: KGN58027.1 (hypothetical protein Csa_010141 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDPTLRS 57
          MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPP N+HLGYHVDDDPTL S
Sbjct: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPPNIHLGYHVDDDPTLWS 56

BLAST of CSPI03G23790 vs. NCBI nr
Match: XP_004134805.1 (SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN49035.1 hypothetical protein Csa_003301 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGLS P + HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLSVPPDAHLGYHAGDPP 51

BLAST of CSPI03G23790 vs. NCBI nr
Match: XP_008440979.1 (PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo] >TYK12453.1 SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-04
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 1  MVTVNAKKTGNVNVIGDEEFEAEEVGGCRSSLPDGLSPPSNVHLGYHVDDDP 53
          M  VN ++  + N  G EE E EEVGG RSSLPDGL+ P + HLGYH  D P
Sbjct: 1  MGNVNGREDEDGNPSGAEE-EDEEVGGRRSSLPDGLAAPPDAHLGYHAGDPP 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBM31.2e-2294.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G444550 PE=4 SV=1[more]
A0A0A0KH576.7e-0557.69AMPKBI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G511020 PE=3... [more]
A0A5D3CKN61.1e-0455.77SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo var. ... [more]
A0A1S3B3521.1e-0455.77SNF1-related protein kinase regulatory subunit beta-2-like OS=Cucumis melo OX=36... [more]
Match NameE-valueIdentityDescription
KGN58027.12.5e-2294.64hypothetical protein Csa_010141 [Cucumis sativus][more]
XP_004134805.11.4e-0457.69SNF1-related protein kinase regulatory subunit beta-2 [Cucumis sativus] >KGN4903... [more]
XP_008440979.12.3e-0455.77PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cucumis m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23790.1CSPI03G23790.1mRNA