Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA
mRNA sequence
ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA
Coding sequence (CDS)
ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA
Protein sequence
MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV*
Homology
BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match:
A0A0A0LAL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0
Query: 1 MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 60
MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ
Sbjct: 82 MKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 141
Query: 61 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 107
FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK
Sbjct: 142 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 187
BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match:
A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 87/132 (65.91%), Postives = 100/132 (75.76%), Query Frame = 0
Query: 44 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
KIRMDVVHKFYD+KF+ DLF+TI+ +K YF+ +VINELY P DAEYLGQ I+TK KG
Sbjct: 2 KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61
Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDY 163
LAKE LKV+AW G EV PM R+QLYPH LT ANVW+FF K KI PT YDSTIS+DY
Sbjct: 62 LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121
Query: 164 AMNYFYYIMTKK 175
+ Y IM KK
Sbjct: 122 TV-ILYCIMIKK 131
BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match:
A0A5D3C3P6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G00010 PE=4 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0
Query: 44 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
KIRMDVVHKFYD+KF+ DLF+TI +K YF+ +VINELY P DAEYLGQ I+TK KG
Sbjct: 2 KIRMDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61
Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN 140
LAKE LKV+AW G EV PM R+QLYPH LT AN
Sbjct: 62 LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKAN 97
BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match:
A0A5A7SQ81 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00070 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 4.4e-22
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0
Query: 36 RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQA 95
RKFF G +KIR++VV KFY +Q + + +D K YF+ + IN+LY P DAE
Sbjct: 77 RKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHV 136
Query: 96 IITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLF 144
+IT +K A E L+ IAWLG ++++ P G++ LYPHQLTI+A+VWLF
Sbjct: 137 LITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLF 184
BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match:
A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)
HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 0
Query: 53 FYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAE-YLGQAIITKLIKGLAKEELKV 112
FY K+H + +V ++ KK F+ + INELYGL D + Y Q++I + KG ++ +++
Sbjct: 6 FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65
Query: 113 IAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIM 172
IAWLG W QLYPHQLT +ANVWL FIKKKI+P YDST+ ++Y M Y M
Sbjct: 66 IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEY-MLLLYCKM 125
Query: 173 TKKRQSTG 180
K+ + G
Sbjct: 126 AKQPFNLG 132
BLAST of CSPI03G23310 vs. NCBI nr
Match:
KGN57984.1 (hypothetical protein Csa_010152 [Cucumis sativus])
HSP 1 Score: 204.9 bits (520), Expect = 6.6e-49
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0
Query: 1 MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 60
MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ
Sbjct: 82 MKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 141
Query: 61 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 107
FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK
Sbjct: 142 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 187
BLAST of CSPI03G23310 vs. NCBI nr
Match:
KAE8650696.1 (hypothetical protein Csa_023718, partial [Cucumis sativus])
HSP 1 Score: 198.0 bits (502), Expect = 8.1e-47
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0
Query: 108 ELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYF 167
ELKVIAWLGTKWEVAPMGRFQLYPHQLTI+ANVWLFFIKKKIVPTRYDSTISVDYAMN F
Sbjct: 1 ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMN-F 60
Query: 168 YYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV 206
YYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV
Sbjct: 61 YYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV 97
BLAST of CSPI03G23310 vs. NCBI nr
Match:
KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 166.4 bits (420), Expect = 2.6e-37
Identity = 87/132 (65.91%), Postives = 100/132 (75.76%), Query Frame = 0
Query: 44 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
KIRMDVVHKFYD+KF+ DLF+TI+ +K YF+ +VINELY P DAEYLGQ I+TK KG
Sbjct: 2 KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61
Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDY 163
LAKE LKV+AW G EV PM R+QLYPH LT ANVW+FF K KI PT YDSTIS+DY
Sbjct: 62 LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121
Query: 164 AMNYFYYIMTKK 175
+ Y IM KK
Sbjct: 122 TV-ILYCIMIKK 131
BLAST of CSPI03G23310 vs. NCBI nr
Match:
TYK05842.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 125.6 bits (314), Expect = 5.1e-25
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0
Query: 44 KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
KIRMDVVHKFYD+KF+ DLF+TI +K YF+ +VINELY P DAEYLGQ I+TK KG
Sbjct: 2 KIRMDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61
Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN 140
LAKE LKV+AW G EV PM R+QLYPH LT AN
Sbjct: 62 LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKAN 97
BLAST of CSPI03G23310 vs. NCBI nr
Match:
KAA0031701.1 (hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK04411.1 hypothetical protein E5676_scaffold409G00070 [Cucumis melo var. makuwa])
HSP 1 Score: 114.8 bits (286), Expect = 9.0e-22
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0
Query: 36 RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQA 95
RKFF G +KIR++VV KFY +Q + + +D K YF+ + IN+LY P DAE
Sbjct: 77 RKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHV 136
Query: 96 IITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLF 144
+IT +K A E L+ IAWLG ++++ P G++ LYPHQLTI+A+VWLF
Sbjct: 137 LITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLF 184
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LAL7 | 3.2e-49 | 97.17 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1 | [more] |
A0A5A7V6M5 | 1.3e-37 | 65.91 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002... | [more] |
A0A5D3C3P6 | 2.5e-25 | 67.01 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G000... | [more] |
A0A5A7SQ81 | 4.4e-22 | 48.15 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DES7 | 1.4e-20 | 44.53 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KGN57984.1 | 6.6e-49 | 97.17 | hypothetical protein Csa_010152 [Cucumis sativus] | [more] |
KAE8650696.1 | 8.1e-47 | 97.96 | hypothetical protein Csa_023718, partial [Cucumis sativus] | [more] |
KAA0062900.1 | 2.6e-37 | 65.91 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
TYK05842.1 | 5.1e-25 | 67.01 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0031701.1 | 9.0e-22 | 48.15 | hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK044... | [more] |
Match Name | E-value | Identity | Description | |