CSPI03G23310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G23310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Gag/pol protein
Location	Chr3: 20151244 .. 20151942 (-)
RNA-Seq Expression	CSPI03G23310
Synteny	CSPI03G23310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGGTCAAAGTGGAAAAAGACCTATTTTCCTTCAACGAAACCCTCTCAAATTGTCTCTTTGCACTAATTAAGTCATTCAACTAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

mRNA sequence

ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

Coding sequence (CDS)

ATGAAAATCGTCGGCACTAGCCATGCAAAGAAACTTAAGACAGGGTCATCCAGACTTGAAGAGACCCAAGCTGACAGTGAAAAGGGAAATTCAATTGACAAAGAGAGGAAGTTTTTCACTGGGGCCACAAAGATCAGAATGGATGTAGTCCACAAGTTTTATGACATGAAGTTTCATCAATTTGATCTATTCGTCACAATTGATGGCAAAAAGACTTACTTCAGTGCAAAGGTCATAAATGAGTTGTATGGCTTGCCTAGAGACGCAGAATACCTGGGGCAAGCCATAATTACAAAACTGATAAAGGGGTTGGCCAAGGAAGAGTTGAAAGTGATAGCATGGCTAGGCACAAAATGGGAAGTGGCCCCAATGGGGAGATTTCAGTTATACCCACATCAACTAACTATTGACGCGAATGTGTGGTTGTTCTTCATAAAGAAAAAGATCGTCCCCACACGATATGACAGTACAATTTCAGTGGACTATGCGATGAATTATTTTTACTACATTATGACAAAAAAAAGGCAATCAACTGGAGCAAATTCATTAAAACTGTCATCCTCACATGAATGGAAACTTCAAAAGGAGCCATGTCCTTCCCTTCAATTAGAGGTGTAA

Protein sequence

MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV*

Homology

[Close]

BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match: A0A0A0LAL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 60
           MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ
Sbjct: 82  MKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 141

Query: 61  FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 107
           FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK
Sbjct: 142 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 187

[Close]

BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 87/132 (65.91%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 44  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
           KIRMDVVHKFYD+KF+  DLF+TI+ +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDY 163
           LAKE LKV+AW G   EV PM  R+QLYPH LT  ANVW+FF K KI PT YDSTIS+DY
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121

Query: 164 AMNYFYYIMTKK 175
            +   Y IM KK
Sbjct: 122 TV-ILYCIMIKK 131

[Close]

BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match: A0A5D3C3P6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G00010 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 44  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
           KIRMDVVHKFYD+KF+  DLF+TI  +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN 140
           LAKE LKV+AW G   EV PM  R+QLYPH LT  AN
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKAN 97

[Close]

BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match: A0A5A7SQ81 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00070 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.4e-22
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 36  RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQA 95
           RKFF G +KIR++VV KFY    +Q + +  +D K  YF+ + IN+LY  P DAE     
Sbjct: 77  RKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHV 136

Query: 96  IITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLF 144
           +IT  +K  A E L+ IAWLG ++++ P G++ LYPHQLTI+A+VWLF
Sbjct: 137 LITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLF 184

[Close]

BLAST of CSPI03G23310 vs. ExPASy TrEMBL
Match: A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 57/128 (44.53%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 53  FYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAE-YLGQAIITKLIKGLAKEELKV 112
           FY  K+H  + +V ++ KK  F+ + INELYGL  D + Y  Q++I +  KG ++  +++
Sbjct: 6   FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65

Query: 113 IAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYFYYIM 172
           IAWLG  W        QLYPHQLT +ANVWL FIKKKI+P  YDST+ ++Y M   Y  M
Sbjct: 66  IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEY-MLLLYCKM 125

Query: 173 TKKRQSTG 180
            K+  + G
Sbjct: 126 AKQPFNLG 132

[Close]

BLAST of CSPI03G23310 vs. NCBI nr
Match: KGN57984.1 (hypothetical protein Csa_010152 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 6.6e-49
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MKIVGTSHAKKLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 60
           MK+VGTSH+K LKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ
Sbjct: 82  MKVVGTSHSKTLKTGSSRLEETQADSEKGNSIDKERKFFTGATKIRMDVVHKFYDMKFHQ 141

Query: 61  FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 107
           FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK
Sbjct: 142 FDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKGLAK 187

[Close]

BLAST of CSPI03G23310 vs. NCBI nr
Match: KAE8650696.1 (hypothetical protein Csa_023718, partial [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 8.1e-47
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 108 ELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDYAMNYF 167
           ELKVIAWLGTKWEVAPMGRFQLYPHQLTI+ANVWLFFIKKKIVPTRYDSTISVDYAMN F
Sbjct: 1   ELKVIAWLGTKWEVAPMGRFQLYPHQLTIEANVWLFFIKKKIVPTRYDSTISVDYAMN-F 60

Query: 168 YYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV 206
           YYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV
Sbjct: 61  YYIMTKKRQSTGANSLKLSSSHEWKLQKEPCPSLQLEV 97

[Close]

BLAST of CSPI03G23310 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-37
Identity = 87/132 (65.91%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 44  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
           KIRMDVVHKFYD+KF+  DLF+TI+ +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDANVWLFFIKKKIVPTRYDSTISVDY 163
           LAKE LKV+AW G   EV PM  R+QLYPH LT  ANVW+FF K KI PT YDSTIS+DY
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDY 121

Query: 164 AMNYFYYIMTKK 175
            +   Y IM KK
Sbjct: 122 TV-ILYCIMIKK 131

[Close]

BLAST of CSPI03G23310 vs. NCBI nr
Match: TYK05842.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 5.1e-25
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 44  KIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQAIITKLIKG 103
           KIRMDVVHKFYD+KF+  DLF+TI  +K YF+ +VINELY  P DAEYLGQ I+TK  KG
Sbjct: 2   KIRMDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKG 61

Query: 104 LAKEELKVIAWLGTKWEVAPMG-RFQLYPHQLTIDAN 140
           LAKE LKV+AW G   EV PM  R+QLYPH LT  AN
Sbjct: 62  LAKEALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKAN 97

[Close]

BLAST of CSPI03G23310 vs. NCBI nr
Match: KAA0031701.1 (hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK04411.1 hypothetical protein E5676_scaffold409G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 9.0e-22
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 36  RKFFTGATKIRMDVVHKFYDMKFHQFDLFVTIDGKKTYFSAKVINELYGLPRDAEYLGQA 95
           RKFF G +KIR++VV KFY    +Q + +  +D K  YF+ + IN+LY  P DAE     
Sbjct: 77  RKFFKGTSKIRLEVVRKFYASDHNQAEYYAIMDEKSAYFNIEAINKLYNFPFDAETPDHV 136

Query: 96  IITKLIKGLAKEELKVIAWLGTKWEVAPMGRFQLYPHQLTIDANVWLF 144
           +IT  +K  A E L+ IAWLG ++++ P G++ LYPHQLTI+A+VWLF
Sbjct: 137 LITATLKRQAMEALETIAWLGAEYDITPTGKYLLYPHQLTIEASVWLF 184

The following BLAST results are available for this feature:

BLAST of CSPI03G23310 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G23310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL7	3.2e-49	97.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G418750 PE=4 SV=1	[more]
A0A5A7V6M5	1.3e-37	65.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5D3C3P6	2.5e-25	67.01	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6952G000...	[more]
A0A5A7SQ81	4.4e-22	48.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DES7	1.4e-20	44.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI03G23310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57984.1	6.6e-49	97.17	hypothetical protein Csa_010152 [Cucumis sativus]	[more]
KAE8650696.1	8.1e-47	97.96	hypothetical protein Csa_023718, partial [Cucumis sativus]	[more]
KAA0062900.1	2.6e-37	65.91	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK05842.1	5.1e-25	67.01	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0031701.1	9.0e-22	48.15	hypothetical protein E6C27_scaffold139G004850 [Cucumis melo var. makuwa] >TYK044...	[more]

BLAST of CSPI03G23310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23310.1	CSPI03G23310.1	mRNA