CSPI03G19270 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G19270
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA ligase 1
Location	Chr3: 15074047 .. 15074862 (-)
RNA-Seq Expression	CSPI03G19270
Synteny	CSPI03G19270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGCCAATTAACTTTAACTCAGATTTTGACTTACCTGGTCATTCTTCTGTTGAATTTCTTCCACCTCCGAGAGATGATAACCGAATGAGTTCTGGTGGATGTATGCCTTTTGTTAGTAACAAAAAGAGAGTGGCTGACCCTGATATCGACAACCCAACTCAGTCTCTTAATGGCGGGAACAAGAGGTTAAGGAGCGAAGGTCCTCTTGACTATGATAAGTGTATGGATAACGTACAACAGTGGCTTAATACAGCAAGGATAATGTACGCAGAGAAAGAACAGGTTCATCAGCAGGCCACTATGAATCAGCAATACTTGCTTCATGAGCTGCAGCAGAGAGAGACCTTTATTGAACATTTGAGAAAGACAAAGTTTGAGGAGCAACAGAAGATGCAATCTGATATTTACCGGCTTGAGCGCGAGCTCTATGTTATGGGAAATCTATTGGACGGCTACAGAAAGGCATTGAGGGAAACAAACAAAACGTTTGCAGACTATAGGACCCAATGCTCACAATCTGATGAACCACTCTACAAAGATGTTGCTGGTTCTGGTGGTCTTGTTCTGAGCACCATGGAACTGGAAAGGATACGTTTGAAGCAGGCAGAGGAAGATAGACTAAGCCGCTTAATTATTGAGAAGTTCAAAGCCTTGGAAGACAAGTTTGTTGACATATTTCATGCTCATCTGCAGCAGGTTAGTTTGTTGGATAGTAGGCTGCTTGAATTTGGAAATGAAGTGAAAACTCTGAGGGAATCACTTGAAAATAAGAAAGTTGCCGAAATTTCAGAATCCATTTCAAATGAATGA

mRNA sequence

ATGACTGAGCCAATTAACTTTAACTCAGATTTTGACTTACCTGGTCATTCTTCTGTTGAATTTCTTCCACCTCCGAGAGATGATAACCGAATGAGTTCTGGTGGATGTATGCCTTTTGTTAGTAACAAAAAGAGAGTGGCTGACCCTGATATCGACAACCCAACTCAGTCTCTTAATGGCGGGAACAAGAGGTTAAGGAGCGAAGGTCCTCTTGACTATGATAAGTGTATGGATAACGTACAACAGTGGCTTAATACAGCAAGGATAATGTACGCAGAGAAAGAACAGGTTCATCAGCAGGCCACTATGAATCAGCAATACTTGCTTCATGAGCTGCAGCAGAGAGAGACCTTTATTGAACATTTGAGAAAGACAAAGTTTGAGGAGCAACAGAAGATGCAATCTGATATTTACCGGCTTGAGCGCGAGCTCTATGTTATGGGAAATCTATTGGACGGCTACAGAAAGGCATTGAGGGAAACAAACAAAACGTTTGCAGACTATAGGACCCAATGCTCACAATCTGATGAACCACTCTACAAAGATGTTGCTGGTTCTGGTGGTCTTGTTCTGAGCACCATGGAACTGGAAAGGATACGTTTGAAGCAGGCAGAGGAAGATAGACTAAGCCGCTTAATTATTGAGAAGTTCAAAGCCTTGGAAGACAAGTTTGTTGACATATTTCATGCTCATCTGCAGCAGGTTAGTTTGTTGGATAGTAGGCTGCTTGAATTTGGAAATGAAGTGAAAACTCTGAGGGAATCACTTGAAAATAAGAAAGTTGCCGAAATTTCAGAATCCATTTCAAATGAATGA

Coding sequence (CDS)

ATGACTGAGCCAATTAACTTTAACTCAGATTTTGACTTACCTGGTCATTCTTCTGTTGAATTTCTTCCACCTCCGAGAGATGATAACCGAATGAGTTCTGGTGGATGTATGCCTTTTGTTAGTAACAAAAAGAGAGTGGCTGACCCTGATATCGACAACCCAACTCAGTCTCTTAATGGCGGGAACAAGAGGTTAAGGAGCGAAGGTCCTCTTGACTATGATAAGTGTATGGATAACGTACAACAGTGGCTTAATACAGCAAGGATAATGTACGCAGAGAAAGAACAGGTTCATCAGCAGGCCACTATGAATCAGCAATACTTGCTTCATGAGCTGCAGCAGAGAGAGACCTTTATTGAACATTTGAGAAAGACAAAGTTTGAGGAGCAACAGAAGATGCAATCTGATATTTACCGGCTTGAGCGCGAGCTCTATGTTATGGGAAATCTATTGGACGGCTACAGAAAGGCATTGAGGGAAACAAACAAAACGTTTGCAGACTATAGGACCCAATGCTCACAATCTGATGAACCACTCTACAAAGATGTTGCTGGTTCTGGTGGTCTTGTTCTGAGCACCATGGAACTGGAAAGGATACGTTTGAAGCAGGCAGAGGAAGATAGACTAAGCCGCTTAATTATTGAGAAGTTCAAAGCCTTGGAAGACAAGTTTGTTGACATATTTCATGCTCATCTGCAGCAGGTTAGTTTGTTGGATAGTAGGCTGCTTGAATTTGGAAATGAAGTGAAAACTCTGAGGGAATCACTTGAAAATAAGAAAGTTGCCGAAATTTCAGAATCCATTTCAAATGAATGA

Protein sequence

MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGGNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYKDVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQVSLLDSRLLEFGNEVKTLRESLENKKVAEISESISNE*

Homology

[Close]

BLAST of CSPI03G19270 vs. ExPASy TrEMBL
Match: A0A5D3CRQ0 (DNA ligase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00830 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135
Identity = 251/271 (92.62%), Postives = 258/271 (95.20%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+FDL GHSSVEFLPPPRDDNRMSSGGC+PFVSN KRV DPDIDNP QSLNGG
Sbjct: 547 TEPINFNSEFDLQGHSSVEFLPPPRDDNRMSSGGCIPFVSNNKRVIDPDIDNPAQSLNGG 606

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 607 NKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 666

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNK FADYRT+C QSDEPLYK
Sbjct: 667 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTRCPQSDEPLYK 726

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRLSRL+IE KFKALEDKFVDIFHAHLQQVS LDS
Sbjct: 727 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLVIEKKFKALEDKFVDIFHAHLQQVSSLDS 786

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLLEFGNEVKTLRESL NKK +E SE ISNE
Sbjct: 787 RLLEFGNEVKTLRESLANKKASETSEPISNE 817

[Close]

BLAST of CSPI03G19270 vs. ExPASy TrEMBL
Match: A0A1S3C2S1 (DNA ligase 1 OS=Cucumis melo OX=3656 GN=LOC103496363 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135
Identity = 251/271 (92.62%), Postives = 258/271 (95.20%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+FDL GHSSVEFLPPPRDDNRMSSGGC+PFVSN KRV DPDIDNP QSLNGG
Sbjct: 547 TEPINFNSEFDLQGHSSVEFLPPPRDDNRMSSGGCIPFVSNNKRVIDPDIDNPAQSLNGG 606

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 607 NKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 666

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNK FADYRT+C QSDEPLYK
Sbjct: 667 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTRCPQSDEPLYK 726

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRLSRL+IE KFKALEDKFVDIFHAHLQQVS LDS
Sbjct: 727 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLVIEKKFKALEDKFVDIFHAHLQQVSSLDS 786

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLLEFGNEVKTLRESL NKK +E SE ISNE
Sbjct: 787 RLLEFGNEVKTLRESLANKKASETSEPISNE 817

[Close]

BLAST of CSPI03G19270 vs. ExPASy TrEMBL
Match: A0A6J1FYG7 (trichohyalin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448641 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.5e-126
Identity = 235/271 (86.72%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 589 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 648

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 649 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 708

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+K FA+YR++C Q DEPLYK
Sbjct: 709 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 768

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 769 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 828

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLL+FGNEVKTLRES  N+K  E SE +SNE
Sbjct: 829 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 858

[Close]

BLAST of CSPI03G19270 vs. ExPASy TrEMBL
Match: A0A6J1FTI0 (trichohyalin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448641 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.5e-126
Identity = 235/271 (86.72%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 579 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 638

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 639 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 698

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+K FA+YR++C Q DEPLYK
Sbjct: 699 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 758

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 759 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 818

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLL+FGNEVKTLRES  N+K  E SE +SNE
Sbjct: 819 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 848

[Close]

BLAST of CSPI03G19270 vs. ExPASy TrEMBL
Match: A0A6J1J662 (golgin subfamily A member 6-like protein 22 OS=Cucurbita maxima OX=3661 GN=LOC111483818 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 4.3e-126
Identity = 235/271 (86.72%), Postives = 251/271 (92.62%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 574 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 633

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 634 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 693

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+K FA+YR +CSQ DEPLYK
Sbjct: 694 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRARCSQPDEPLYK 753

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 754 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 813

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLL+FGNEVKTL ES  N+K  E SE +SNE
Sbjct: 814 RLLDFGNEVKTLSESFANRKAPETSEPVSNE 843

[Close]

BLAST of CSPI03G19270 vs. NCBI nr
Match: KAE8650536.1 (hypothetical protein Csa_009904 [Cucumis sativus])

HSP 1 Score: 526.9 bits (1356), Expect = 1.0e-145
Identity = 268/271 (98.89%), Postives = 268/271 (98.89%), Query Frame = 0


Query: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60
           MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG
Sbjct: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60

Query: 61  GNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120
           GNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIE
Sbjct: 61  GNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120

Query: 121 HLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLY 180
           HLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNK FADYRTQCSQSDEPLY
Sbjct: 121 HLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY 180

Query: 181 KDVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQVSLLDS 240
           KDVAGSGGLVLSTMELERIRLK AEEDRLSRLIIEKFKALEDKFVDIFHAHLQQVSLLDS
Sbjct: 181 KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQVSLLDS 240

Query: 241 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLLEFGNEVKTLRESLENKKVAE SESISNE
Sbjct: 241 RLLEFGNEVKTLRESLENKKVAETSESISNE 271

[Close]

BLAST of CSPI03G19270 vs. NCBI nr
Match: XP_011657085.2 (trichohyalin [Cucumis sativus] >KAE8646919.1 hypothetical protein Csa_020837 [Cucumis sativus])

HSP 1 Score: 503.4 bits (1295), Expect = 1.2e-138
Identity = 257/272 (94.49%), Postives = 263/272 (96.69%), Query Frame = 0


Query: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60
           MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGC+PFVSN KRV DPDIDNPTQSLNG
Sbjct: 535 MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCIPFVSNNKRVIDPDIDNPTQSLNG 594

Query: 61  GNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120
           GNKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIE
Sbjct: 595 GNKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIE 654

Query: 121 HLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLY 180
           HLRKTK+EEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRT+C QSDEPLY
Sbjct: 655 HLRKTKYEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTRCPQSDEPLY 714

Query: 181 KDVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLD 240
           KDVAGSGGLVLSTMELERIRLKQAEEDRL+RLIIE KFKALEDKFVDIFHAHLQQVS LD
Sbjct: 715 KDVAGSGGLVLSTMELERIRLKQAEEDRLNRLIIEKKFKALEDKFVDIFHAHLQQVSSLD 774

Query: 241 SRLLEFGNEVKTLRESLENKKVAEISESISNE 272
           SRLLEFGNEVKTLRESL NKKV E SESISNE
Sbjct: 775 SRLLEFGNEVKTLRESLANKKVTETSESISNE 806

[Close]

BLAST of CSPI03G19270 vs. NCBI nr
Match: XP_008456415.1 (PREDICTED: DNA ligase 1 [Cucumis melo] >KAA0054452.1 DNA ligase 1 [Cucumis melo var. makuwa] >TYK14587.1 DNA ligase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 491.5 bits (1264), Expect = 4.7e-135
Identity = 251/271 (92.62%), Postives = 258/271 (95.20%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+FDL GHSSVEFLPPPRDDNRMSSGGC+PFVSN KRV DPDIDNP QSLNGG
Sbjct: 547 TEPINFNSEFDLQGHSSVEFLPPPRDDNRMSSGGCIPFVSNNKRVIDPDIDNPAQSLNGG 606

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 607 NKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 666

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNK FADYRT+C QSDEPLYK
Sbjct: 667 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTRCPQSDEPLYK 726

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRLSRL+IE KFKALEDKFVDIFHAHLQQVS LDS
Sbjct: 727 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLVIEKKFKALEDKFVDIFHAHLQQVSSLDS 786

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLLEFGNEVKTLRESL NKK +E SE ISNE
Sbjct: 787 RLLEFGNEVKTLRESLANKKASETSEPISNE 817

[Close]

BLAST of CSPI03G19270 vs. NCBI nr
Match: KAG7010397.1 (hypothetical protein SDJN02_27190, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.5 bits (1186), Expect = 5.2e-126
Identity = 235/271 (86.72%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 594 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 653

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 654 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 713

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+K FA+YR++C Q DEPLYK
Sbjct: 714 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 773

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 774 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 833

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLL+FGNEVKTLRES  N+K  E SE +SNE
Sbjct: 834 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 863

[Close]

BLAST of CSPI03G19270 vs. NCBI nr
Match: KAG6570542.1 (hypothetical protein SDJN03_29457, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461.5 bits (1186), Expect = 5.2e-126
Identity = 235/271 (86.72%), Postives = 252/271 (92.99%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 616 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 675

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 676 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 735

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+K FA+YR++C Q DEPLYK
Sbjct: 736 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 795

Query: 182 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLKQAEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 796 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 855

Query: 242 RLLEFGNEVKTLRESLENKKVAEISESISNE 272
           RLL+FGNEVKTLRES  N+K  E SE +SNE
Sbjct: 856 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 885

[Close]

BLAST of CSPI03G19270 vs. TAIR 10
Match: AT3G58110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905 proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa - 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes - 1107 (source: NCBI BLink). )

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-44
Identity = 108/274 (39.42%), Postives = 163/274 (59.49%), Query Frame = 0


Query: 4   PINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFV---SNKKRVADPDIDNPTQSLNG 63
           P+ +NS   + G+S        R +  M+ G     +    N KR  + +      S N 
Sbjct: 498 PLGYNSGLQIHGNSIGGDFLASRGEMHMAMGSGSSSLFGNGNNKREIEHENGITYHSHNP 557

Query: 64  GNKRLRSEGPL------DYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQ 123
            NKRLR+E P         D C+D +  W   AR+ +AEK++  +Q+ +NQQYL++ELQ 
Sbjct: 558 INKRLRTEEPSWDEKPPPVDMCLDQMAYWAEKARLSFAEKDREREQSVINQQYLMNELQS 617

Query: 124 RETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCS- 183
           +   I+ L +TKFEEQQ+    IY+LE EL +M ++++GYRKAL+ T K   ++R +C  
Sbjct: 618 KTAMIQELERTKFEEQQRKDIMIYKLESELRMMTSVVEGYRKALKITQKASREHRKRCPL 677

Query: 184 QSDEPLYKDVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIEK-FKALEDKFVDIFHAHL 243
           + D+ +Y DV GSGGLVLST E+E++RLKQ EEDR+ R++ ++     E  +++ F  H+
Sbjct: 678 RDDKQVYMDVKGSGGLVLSTTEIEKLRLKQEEEDRMQRVLAKRQIDDFEHNWLNKFEEHM 737

Query: 244 QQVSLLDSRLLEFGNEVKTLRESLENKKVAEISE 267
           + V LL+ RL+E  +EVK LRE+L   K  E SE
Sbjct: 738 EAVELLNERLIENEDEVKILRETLSESKNIETSE 771

[Close]

BLAST of CSPI03G19270 vs. TAIR 10
Match: AT3G58110.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1). )

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-44
Identity = 108/274 (39.42%), Postives = 163/274 (59.49%), Query Frame = 0


Query: 4   PINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFV---SNKKRVADPDIDNPTQSLNG 63
           P+ +NS   + G+S        R +  M+ G     +    N KR  + +      S N 
Sbjct: 468 PLGYNSGLQIHGNSIGGDFLASRGEMHMAMGSGSSSLFGNGNNKREIEHENGITYHSHNP 527

Query: 64  GNKRLRSEGPL------DYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQ 123
            NKRLR+E P         D C+D +  W   AR+ +AEK++  +Q+ +NQQYL++ELQ 
Sbjct: 528 INKRLRTEEPSWDEKPPPVDMCLDQMAYWAEKARLSFAEKDREREQSVINQQYLMNELQS 587

Query: 124 RETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQCS- 183
           +   I+ L +TKFEEQQ+    IY+LE EL +M ++++GYRKAL+ T K   ++R +C  
Sbjct: 588 KTAMIQELERTKFEEQQRKDIMIYKLESELRMMTSVVEGYRKALKITQKASREHRKRCPL 647

Query: 184 QSDEPLYKDVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIEK-FKALEDKFVDIFHAHL 243
           + D+ +Y DV GSGGLVLST E+E++RLKQ EEDR+ R++ ++     E  +++ F  H+
Sbjct: 648 RDDKQVYMDVKGSGGLVLSTTEIEKLRLKQEEEDRMQRVLAKRQIDDFEHNWLNKFEEHM 707

Query: 244 QQVSLLDSRLLEFGNEVKTLRESLENKKVAEISE 267
           + V LL+ RL+E  +EVK LRE+L   K  E SE
Sbjct: 708 EAVELLNERLIENEDEVKILRETLSESKNIETSE 741

[Close]

BLAST of CSPI03G19270 vs. TAIR 10
Match: AT2G42370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits to 191 proteins in 60 species: Archae - 3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). )

HSP 1 Score: 145.2 bits (365), Expect = 7.7e-35
Identity = 92/270 (34.07%), Postives = 157/270 (58.15%), Query Frame = 0


Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPD-----IDNPTQ 61
           T  + +NS   + G S+ +FL  PR    M  G       NK+     +      DNP  
Sbjct: 440 TSTLGYNSGLQVHGSSTCDFL-APRAVMHMVPGRSHFGNDNKREFGHENDISYHFDNPAS 499

Query: 62  SLNGGNKRLRS----EGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHEL 121
           +     KRL++    + P+ +D CM+ ++   + A++ Y EK+Q   ++ M +Q L +EL
Sbjct: 500 T-----KRLKTPSWDDKPVPFDICMEQIKHLADKAKLSYVEKDQACGESNMREQMLQNEL 559

Query: 122 QQRETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKTFADYRTQC 181
           Q+RE  I+ L K  +EE  K   +IY+LE EL +M ++L  Y+KAL+E+ K    +R  C
Sbjct: 560 QRREDIIQQLHKESYEELHKKNVEIYKLENELRMMTSVLAWYQKALKESQKACRKHRKVC 619

Query: 182 SQSDEPLYKDVAGSGGLVLSTMELERIRLKQAEEDRLSRLIIEK-FKALEDKFVDIFHAH 241
              D+P+Y DV G+GGLVLST E+E++RLK+ +E+ + R++IE+  K +   ++  +  +
Sbjct: 620 PLLDKPIYIDVKGTGGLVLSTAEIEKLRLKEEKEEGMRRVLIERQVKEVGSLWIKEYEVN 679

Query: 242 L-QQVSLLDSRLLEFGNEVKTLRESLENKK 261
           L ++V LLD +L+ F N++K L+E++  ++
Sbjct: 680 LKKKVELLDGKLIGFQNKMKLLKETISRRE 703

The following BLAST results are available for this feature:

BLAST of CSPI03G19270 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G19270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRQ0	2.3e-135	92.62	DNA ligase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00830 P...	[more]
A0A1S3C2S1	2.3e-135	92.62	DNA ligase 1 OS=Cucumis melo OX=3656 GN=LOC103496363 PE=4 SV=1	[more]
A0A6J1FYG7	2.5e-126	86.72	trichohyalin-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448641 PE=4 ...	[more]
A0A6J1FTI0	2.5e-126	86.72	trichohyalin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448641 PE=4 ...	[more]
A0A6J1J662	4.3e-126	86.72	golgin subfamily A member 6-like protein 22 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CSPI03G19270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650536.1	1.0e-145	98.89	hypothetical protein Csa_009904 [Cucumis sativus]	[more]
XP_011657085.2	1.2e-138	94.49	trichohyalin [Cucumis sativus] >KAE8646919.1 hypothetical protein Csa_020837 [Cu...	[more]
XP_008456415.1	4.7e-135	92.62	PREDICTED: DNA ligase 1 [Cucumis melo] >KAA0054452.1 DNA ligase 1 [Cucumis melo ...	[more]
KAG7010397.1	5.2e-126	86.72	hypothetical protein SDJN02_27190, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570542.1	5.2e-126	86.72	hypothetical protein SDJN03_29457, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G19270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58110.1	2.4e-44	39.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G58110.2	2.4e-44	39.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G42370.1	7.7e-35	34.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70
None	No IPR available	PANTHER	PTHR35120	HISTONE ACETYLTRANSFERASE KAT6B-LIKE	coord: 6..267
None	No IPR available	PANTHER	PTHR35120:SF2	HISTONE ACETYLTRANSFERASE KAT6B-LIKE	coord: 6..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G19270.1	CSPI03G19270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016874	ligase activity