Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATGAGAGTGTCTCTTATTTGGCTATTTCTCCTCGCTGCCGTCGACGTTCGGCCGCAGAACGATCCCGGCCCCCCACCTAGGTTTCTTTCTTCTTCCTCATTCCCTACGGCGCCCACAGACCGACACACCAGCCCCTCTCTGTTGTCGGTCTTTGACACATCTCTGTATCCATTTTCTCTCCGTCTCTTATTCTGTAGCCTCACACTCCAAGCTGCCATTTGCACAATGCTTCCATCTTCAGATCTCTCGTTGTGATCAAACTTTTTCTGTCTTTTCTTACGTTCTTCTCTATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAA
mRNA sequence
TGATGAGAGTGTCTCTTATTTGGCTATTTCTCCTCGCTGCCGTCGACGTTCGGCCGCAGAACGATCCCGGCCCCCCACCTAGGTTTCTTTCTTCTTCCTCATTCCCTACGGCGCCCACAGACCGACACACCAGCCCCTCTCTGTTGTCGGTCTTTGACACATCTCTGTATCCATTTTCTCTCCGTCTCTTATTCTGTAGCCTCACACTCCAAGCTGCCATTTGCACAATGCTTCCATCTTCAGATCTCTCGTTGTGATCAAACTTTTTCTGTCTTTTCTTACGTTCTTCTCTATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAA
Coding sequence (CDS)
ATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAA
Protein sequence
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETHERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF*
Homology
BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match:
A0A0A0L2H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088970 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF 110
ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF
Sbjct: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF 109
BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match:
A0A5A7U0J5 (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001900 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match:
A0A5D3C0T2 (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001010 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match:
A0A1S4DZ03 (WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match:
A0A1S4DZQ2 (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)
HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. NCBI nr
Match:
XP_031738523.1 (WD repeat-containing protein 25 isoform X2 [Cucumis sativus])
HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP
Sbjct: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99
BLAST of CSPI03G05530 vs. NCBI nr
Match:
XP_011650540.1 (WD repeat-containing protein 25 isoform X1 [Cucumis sativus] >KAE8650152.1 hypothetical protein Csa_009510 [Cucumis sativus])
HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP
Sbjct: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99
BLAST of CSPI03G05530 vs. NCBI nr
Match:
XP_016901209.1 (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo])
HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. NCBI nr
Match:
TYK04782.1 (WD repeat-containing protein 25 isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. NCBI nr
Match:
XP_016901210.1 (PREDICTED: WD repeat-containing protein 25 isoform X2 [Cucumis melo])
HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R HCS SN + H
Sbjct: 1 MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60
Query: 61 ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61 ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99
BLAST of CSPI03G05530 vs. TAIR 10
Match:
AT5G54520.1 (Transducin/WD40 repeat-like superfamily protein )
HSP 1 Score: 45.1 bits (105), Expect = 4.4e-05
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 0
Query: 1 MESLFKAYSNSSDDYDE---EDEPKPKRLALSSSPSKRPEREP--FKFKPNLRSL--HCS 60
M+ + +Y+N SDD E + K A S PSKRP P ++KP R H S
Sbjct: 1 MDLICNSYANDSDDEPEPVTNERLTSKIAAAPSIPSKRPYPVPEERQYKPPRRPYPPHGS 60
Query: 61 DSNSETHER--------IMVPGRYVSKRERALLSSTPASRAPD 89
S S+T + VPGRYVSKRER+LL+S PD
Sbjct: 61 YSESQTSSSFSIPVPVPVPVPGRYVSKRERSLLASLSTIPTPD 103
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L2H7 | 3.0e-54 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088970 PE=4 SV=1 | [more] |
A0A5A7U0J5 | 2.5e-40 | 86.87 | WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=119469... | [more] |
A0A5D3C0T2 | 2.5e-40 | 86.87 | WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=119469... | [more] |
A0A1S4DZ03 | 2.5e-40 | 86.87 | WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034933... | [more] |
A0A1S4DZQ2 | 2.5e-40 | 86.87 | WD repeat-containing protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034933... | [more] |
Match Name | E-value | Identity | Description | |
XP_031738523.1 | 4.3e-47 | 100.00 | WD repeat-containing protein 25 isoform X2 [Cucumis sativus] | [more] |
XP_011650540.1 | 4.3e-47 | 100.00 | WD repeat-containing protein 25 isoform X1 [Cucumis sativus] >KAE8650152.1 hypot... | [more] |
XP_016901209.1 | 5.1e-40 | 86.87 | PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo] | [more] |
TYK04782.1 | 5.1e-40 | 86.87 | WD repeat-containing protein 25 isoform X2 [Cucumis melo var. makuwa] | [more] |
XP_016901210.1 | 5.1e-40 | 86.87 | PREDICTED: WD repeat-containing protein 25 isoform X2 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
AT5G54520.1 | 4.4e-05 | 38.83 | Transducin/WD40 repeat-like superfamily protein | [more] |