CSPI03G05530 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05530
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	WD repeat-containing protein 25
Location	Chr3: 4695080 .. 4695712 (-)
RNA-Seq Expression	CSPI03G05530
Synteny	CSPI03G05530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGAGAGTGTCTCTTATTTGGCTATTTCTCCTCGCTGCCGTCGACGTTCGGCCGCAGAACGATCCCGGCCCCCCACCTAGGTTTCTTTCTTCTTCCTCATTCCCTACGGCGCCCACAGACCGACACACCAGCCCCTCTCTGTTGTCGGTCTTTGACACATCTCTGTATCCATTTTCTCTCCGTCTCTTATTCTGTAGCCTCACACTCCAAGCTGCCATTTGCACAATGCTTCCATCTTCAGATCTCTCGTTGTGATCAAACTTTTTCTGTCTTTTCTTACGTTCTTCTCTATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAA

mRNA sequence

TGATGAGAGTGTCTCTTATTTGGCTATTTCTCCTCGCTGCCGTCGACGTTCGGCCGCAGAACGATCCCGGCCCCCCACCTAGGTTTCTTTCTTCTTCCTCATTCCCTACGGCGCCCACAGACCGACACACCAGCCCCTCTCTGTTGTCGGTCTTTGACACATCTCTGTATCCATTTTCTCTCCGTCTCTTATTCTGTAGCCTCACACTCCAAGCTGCCATTTGCACAATGCTTCCATCTTCAGATCTCTCGTTGTGATCAAACTTTTTCTGTCTTTTCTTACGTTCTTCTCTATTTCAGAGCTATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAA

Coding sequence (CDS)

ATGGAATCTCTGTTCAAAGCTTACTCAAATTCCTCTGACGATTACGACGAAGAAGATGAACCTAAGCCCAAGCGCTTGGCCCTCTCCTCTTCACCTTCAAAGAGACCCGAACGCGAACCTTTTAAATTCAAGCCGAACTTACGGTCATTGCATTGCTCGGACTCTAATTCTGAGACTCATGAGAGGATTATGGTTCCTGGACGCTACGTTTCCAAGAGAGAGCGAGCACTCTTGAGTTCAACTCCAGCATCAAGGGCTCCAGACTCATTTCCTAACCCATCATTTCAAACTCCACCTGGTATCTGTCCTTTTCGTTTATTTAGCTTCTAA

Protein sequence

MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETHERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF*

Homology

[Close]

BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match: A0A0A0L2H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088970 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF 110
           ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPPGICPFRLFSF 109

[Close]

BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match: A0A5A7U0J5 (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G001900 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match: A0A5D3C0T2 (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001010 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match: A0A1S4DZ03 (WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. ExPASy TrEMBL
Match: A0A1S4DZQ2 (WD repeat-containing protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493399 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. NCBI nr
Match: XP_031738523.1 (WD repeat-containing protein 25 isoform X2 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of CSPI03G05530 vs. NCBI nr
Match: XP_011650540.1 (WD repeat-containing protein 25 isoform X1 [Cucumis sativus] >KAE8650152.1 hypothetical protein Csa_009510 [Cucumis sativus])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP
Sbjct: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 99

[Close]

BLAST of CSPI03G05530 vs. NCBI nr
Match: XP_016901209.1 (PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. NCBI nr
Match: TYK04782.1 (WD repeat-containing protein 25 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. NCBI nr
Match: XP_016901210.1 (PREDICTED: WD repeat-containing protein 25 isoform X2 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPEREPFKFKPNLRSLHCSDSNSETH 60
           MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPE EPFKFKPN+R  HCS SN + H
Sbjct: 1   MESLFKAYSNSSDDYDEEDEPKPKRLALSSSPSKRPELEPFKFKPNIRPSHCSHSNPQPH 60

Query: 61  ERIMVPGRYVSKRERALLSSTPASRAPDSFPNPSFQTPP 100
           ERIMVPGRY+SKRERALLSS PASRAP+SFPNPS Q+PP
Sbjct: 61  ERIMVPGRYISKRERALLSSAPASRAPESFPNPSLQSPP 99

[Close]

BLAST of CSPI03G05530 vs. TAIR 10
Match: AT5G54520.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 4.4e-05
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 1   MESLFKAYSNSSDDYDE---EDEPKPKRLALSSSPSKRPEREP--FKFKPNLRSL--HCS 60
           M+ +  +Y+N SDD  E    +    K  A  S PSKRP   P   ++KP  R    H S
Sbjct: 1   MDLICNSYANDSDDEPEPVTNERLTSKIAAAPSIPSKRPYPVPEERQYKPPRRPYPPHGS 60

Query: 61  DSNSETHER--------IMVPGRYVSKRERALLSSTPASRAPD 89
            S S+T           + VPGRYVSKRER+LL+S      PD
Sbjct: 61  YSESQTSSSFSIPVPVPVPVPGRYVSKRERSLLASLSTIPTPD 103

The following BLAST results are available for this feature:

BLAST of CSPI03G05530 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G05530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2H7	3.0e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088970 PE=4 SV=1	[more]
A0A5A7U0J5	2.5e-40	86.87	WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3C0T2	2.5e-40	86.87	WD repeat-containing protein 25 isoform X2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S4DZ03	2.5e-40	86.87	WD repeat-containing protein 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034933...	[more]
A0A1S4DZQ2	2.5e-40	86.87	WD repeat-containing protein 25 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034933...	[more]

BLAST of CSPI03G05530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738523.1	4.3e-47	100.00	WD repeat-containing protein 25 isoform X2 [Cucumis sativus]	[more]
XP_011650540.1	4.3e-47	100.00	WD repeat-containing protein 25 isoform X1 [Cucumis sativus] >KAE8650152.1 hypot...	[more]
XP_016901209.1	5.1e-40	86.87	PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo]	[more]
TYK04782.1	5.1e-40	86.87	WD repeat-containing protein 25 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016901210.1	5.1e-40	86.87	PREDICTED: WD repeat-containing protein 25 isoform X2 [Cucumis melo]	[more]

BLAST of CSPI03G05530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54520.1	4.4e-05	38.83	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05530.1	CSPI03G05530.1	mRNA