Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGAAGAAAAAGAGAATTACCCATTTCTCCCTTTCCTAAACAAAACATAACATTTTAGCCTCAACCCTCAGTCAGGGAATCTCTGAACGGGAAAAGAAAAAAGAACAAAAAAAGGTGAAATTGAGTTCGGGTTTTGTTGATCATCGTCTTGATTCTTGATTTGATTTCAATTTGATCCATCCATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAAATCAATCAAATCCATCATACACGGTTCTTTTTCTCTTCTTTCTCTACTACTTACTACTTACTACTTCTCAATCTAAATCCTCGTAAATCAATTATTATTAATTACTCTAATTTTTCTTTTACTTAATAACCGCTTTTTCTCTAATCCATTCCCCTCCAAATCTCCGATCTGATGTCATGAATATGAACATATATATGTCTCTGTTTTGTACTTTTTGTAATTTAATTTCTTGAGATCCATTACTGGTAGTGTGTGTTTAGATGAATCGCTATGTGGTTTTTTTGTTTTTTTGTTTTGTTTCTGCTGGTTATGAATTTCGATTGATGATTCGATGAATTTCGTTAAGAAGATGAAGTGAAAGGTTGTGCTGAATCGACTTGGAGAGTGAAAGGGGAAATTTGATGTGTTTGTTCTTTT
mRNA sequence
GAAAAGAAGAAAAAGAGAATTACCCATTTCTCCCTTTCCTAAACAAAACATAACATTTTAGCCTCAACCCTCAGTCAGGGAATCTCTGAACGGGAAAAGAAAAAAGAACAAAAAAAGGTGAAATTGAGTTCGGGTTTTGTTGATCATCGTCTTGATTCTTGATTTGATTTCAATTTGATCCATCCATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAAATCAATCAAATCCATCATACACGGTTCTTTTTCTCTTCTTTCTCTACTACTTACTACTTACTACTTCTCAATCTAAATCCTCGTAAATCAATTATTATTAATTACTCTAATTTTTCTTTTACTTAATAACCGCTTTTTCTCTAATCCATTCCCCTCCAAATCTCCGATCTGATGTCATGAATATGAACATATATATGTCTCTGTTTTGTACTTTTTGTAATTTAATTTCTTGAGATCCATTACTGGTAGTGTGTGTTTAGATGAATCGCTATGTGGTTTTTTTGTTTTTTTGTTTTGTTTCTGCTGGTTATGAATTTCGATTGATGATTCGATGAATTTCGTTAAGAAGATGAAGTGAAAGGTTGTGCTGAATCGACTTGGAGAGTGAAAGGGGAAATTTGATGTGTTTGTTCTTTT
Coding sequence (CDS)
ATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAA
Protein sequence
MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFANTSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD*
Homology
BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match:
A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN
Sbjct: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91
BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match:
A0A218XLN4 (uncharacterized protein LOC116213666 OS=Punica granatum OX=22663 GN=LOC116213666 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
M IP+ ++K+R HILV +ILSL+L L LLAP F++LLAYFWPLFLSTALFL+AV+ F
Sbjct: 1 MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60
Query: 61 TSLPSPDKAAEGLLSYVAGHHD 83
TS P+PDKA EGLL YVAG D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82
BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match:
A0A2N9IPE7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55289 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIP+ ++K++FH L LILSL+L +LF +AP FL++LAYFWPLFLSTALFL AVL+F
Sbjct: 1 MEIPANLLKYKFHFLFALILSLSLTTLFFIAPRFLTILAYFWPLFLSTALFLFAVLVFGK 60
Query: 61 TSLPSP----DKAAEGLLSYVAGH 81
TS+P+ DKAA+GLL YVAGH
Sbjct: 61 TSVPATEPPGDKAAKGLLDYVAGH 84
BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match:
A0A371EZD3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 58/89 (65.17%), Postives = 65/89 (73.03%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIP KV+KFRFH L L+ LTLFSL L+AP F++LLAYFWPLFLSTA+ L V FA
Sbjct: 1 MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60
Query: 61 TS-LPSPD-----KAAEGLLSYVAGHHDL 84
TS LPS D A +GLL YVAGHHDL
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHDL 89
BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match:
A0A7N2M8L6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 7.2e-17
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIP+K+++++F L LILS+TL +LF LAP FL++LAYFWPLFLSTALFL AVL+F
Sbjct: 1 MEIPAKLLQYKFQFLFALILSVTLIALFFLAPRFLTILAYFWPLFLSTALFLFAVLVFGK 60
Query: 61 TSLPSPD----KAAEGLLSYVAGH 81
TS PS D KA EGLL YVAGH
Sbjct: 61 TSPPSTDAPGGKAGEGLLDYVAGH 84
BLAST of CSPI03G04060 vs. NCBI nr
Match:
KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])
HSP 1 Score: 164.1 bits (414), Expect = 5.8e-37
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN
Sbjct: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91
BLAST of CSPI03G04060 vs. NCBI nr
Match:
KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIPSKV KFRFH L L L LTLFSL LLAP LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1 MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
SLP PDK EGLL+YVAGH DLD +SLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 90
BLAST of CSPI03G04060 vs. NCBI nr
Match:
KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 120.9 bits (302), Expect = 5.6e-24
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIP KV KFRFHI+ LILSL LFSL LLAP FLSLLA+FWPL LSTALFLLAVLLF N
Sbjct: 1 MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60
Query: 61 TSLPSPDKAAEGLLSYVAGH--HDLDS 86
TSLP PDKAAEGLL+YVAGH H LD+
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87
BLAST of CSPI03G04060 vs. NCBI nr
Match:
KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 120.6 bits (301), Expect = 7.3e-24
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEIPSKV +FRFH L L L LTLFSL LLAP LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1 MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60
Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
SLP PDK EGLL+YVAGH DLD +SLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 90
BLAST of CSPI03G04060 vs. NCBI nr
Match:
XP_031404551.1 (uncharacterized protein LOC116213666 [Punica granatum] >OWM85804.1 hypothetical protein CDL15_Pgr012054 [Punica granatum] >PKI77517.1 hypothetical protein CRG98_002123 [Punica granatum])
HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
M IP+ ++K+R HILV +ILSL+L L LLAP F++LLAYFWPLFLSTALFL+AV+ F
Sbjct: 1 MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60
Query: 61 TSLPSPDKAAEGLLSYVAGHHD 83
TS P+PDKA EGLL YVAG D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82
BLAST of CSPI03G04060 vs. TAIR 10
Match:
AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
MEI +K+M++RFH +VT+++S+ + SL AP L++LAYFWPLF STA FL + F
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181
Query: 61 TSLPSPDKAAEGLLSYVAGH-HDLDSSSLKSD 92
S + E L+ YVAG D ++L+ D
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSHKNNLRDD 213
BLAST of CSPI03G04060 vs. TAIR 10
Match:
AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0
Query: 1 MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
ME K++KF+ I+ +LSL +L +P FL++L+YFWPLFLSTALFL AV FA
Sbjct: 1 MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60
Query: 61 TS-LPSPDK-----------AAEGLLSYVAG--HHDL 84
TS LP AAEG+L YV G H D+
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDI 97
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L7E9 | 2.8e-37 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1 | [more] |
A0A218XLN4 | 5.0e-18 | 67.07 | uncharacterized protein LOC116213666 OS=Punica granatum OX=22663 GN=LOC116213666... | [more] |
A0A2N9IPE7 | 3.2e-17 | 64.29 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55289 PE=4 SV=1 | [more] |
A0A371EZD3 | 4.2e-17 | 65.17 | Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 P... | [more] |
A0A7N2M8L6 | 7.2e-17 | 65.48 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KGN56016.1 | 5.8e-37 | 100.00 | hypothetical protein Csa_010324 [Cucumis sativus] | [more] |
KAG7028299.1 | 3.3e-24 | 78.02 | hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6577526.1 | 5.6e-24 | 80.46 | hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6596766.1 | 7.3e-24 | 76.92 | hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_031404551.1 | 1.0e-17 | 67.07 | uncharacterized protein LOC116213666 [Punica granatum] >OWM85804.1 hypothetical ... | [more] |
Match Name | E-value | Identity | Description | |
AT4G16400.1 | 1.5e-11 | 43.48 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT3G13175.1 | 7.6e-11 | 46.39 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |