CSPI03G03700 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G03700
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerase III subunit rpc6-like
Location	Chr3: 3059703 .. 3062448 (+)
RNA-Seq Expression	CSPI03G03700
Synteny	CSPI03G03700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTAGGTTAGGCGTACGTCTCCCTCTTCTCCGTTTCGCCTCCTCGCGCGCCGTCCGTCTCCGTCTTCTCAGCAGCCGTCCGTCTCCCTCTCGGCTGTCGCTCTCCGATACTCCTTCCGACGGCCATTCTAACAGCCTGGTACACTAAAATTATTTACTCTGGCAAAATTATACTTCAATGTTTGATGCATGTCTAAAGCTTAATAATCTAAATTAAACATGATCTTTGAAGCTCTCGATTGAAACTTCTTATTATGCCTTGTGGTTATGGTTTCTCGATGAACCTGGGATTGTGGTGGAGAAAAAAGAAGATTTAACAAGTATCTAACCACACTGAAAGATGATTTATCCCAAGTATTTGATCATGCTACTCGGTCTGGGATCTTTACTGTTCATGCCAATCTGTTTTTAGTAGACGAGCTAAATATGCAAGTAATCTAGCTAGCCAGTGAGTCAGGTCTACGATTATCGTTTTCACTTTGGAAGTCTTAGTTTTTTTTTTCTTGTCAGGGATAGTTTTTGCATTCTATCTATGGAAAAGGAGGATTGTCGTTTTTCTACTCTTGCTACACAAACATGTAACTGTGGAGCATTATTGCAGCTCTTTACTTTTTTCACCTTACCTGCTTTCAACTTTTGGTATACTGAAATTATATTTGTTCCCCATCAGTTACTACAGGAGAATGGAATTGTTCAGTCGGGACTCTTTTTATTACATTATATTTCATGCCCCTTTATCTCCGTCCTCAGTTTTTTCCTCCTTGTGTCGAAACTGTCAAGGATTATAAGTTCAAGTTACAAGCTTTTGAATATGGCTTCTCTTGAAGCTGTTTTAGCTTGTAACAAAAAAATTAGCTCTTTCAATCTCTTAGTTCAGTGGCTGAATGCTTAAAAAGGTTGTATTATTTTGTATCTAGATACATATCTTAGAATCAGATGATTTGAAGATTAAGAACATATTTATTGTTCTTACTACTAGGAGTTTGTTAATGCCTTGAAACGTTCGACTCCTAAAGCAAAAAATAATGTTGTGTAGAAGAGATGTTCTATGTTTCCTGTTCCTGTTTTGGTCATTGTATTAATTATTGTAAGTACCAGTACTACAATCCGCTGAAACAAGCACAGGGAATTAAGTTATCTATGTGATTTGATTTCGCCCTCTCTGTTGGGTGACTTCTTTTTATTACATTGTTCATATGTGATTTTGTTTATGGCAAAGGGAGCTACTTATACTTGTGACTTCCAAGTAAGAATAAATAAACGTAGATGGTTTGTTCTTACTTTTTAAACTTTGCAAACATTAGAATTTAAAAATGAAAAAAAGAAAAAAAAATTACAATCCAAACCAACCCATATTTTATGGTTTGGGTTGAGTTGAAAACTTAATTCGGGTTGCCAACCCAACTAACCCGAAAATATGGGTTGGGTTGAGAATATCTCCCAACCCAACCCGTTTATACCCCTAGTTCGAATTCGTGAAAAAATTGAAAAATTTAGTGCTAGATTTTAGTTTTGTTCCCCTGTTTCCTTTATTTTAGTGAGTGATTTGAATCTGATTGTATAACCATTTTAATATTTTGTTTTACACTTTTTCAAAGGTAATTCTGAATGATTTGAAGGTGTTTTTTTTTGTGTGTGATTATTGTTTGTTAGTTTATATATATTGAAAGTTTGATGATTTGCTGGATCGGGAAAAGGAGTTTTCTTTACAGATTACTCAAATTTAGTTTCATTAATGTCAGTGACATGAATTTTTTAAAAATAATGAAAACTAATATTAGACACTCTCAACATCTATTAGTTTGACCAGATTTGGATTATCCGTAAAGAAAAAACACTCTCGGCGAAATGAGTATCGGTTGTTTTTGTTAAGAAGCATGGTAGAAAGTAAATTATTAGACACTCAACATCAATTTGTTTGAAACACTATAATATTTGGTGCAGCAATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAAATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAAGTTGAATCATTTTGAAGATTTTTACACATAATGTGCATATGTATTTAAACTTATCTTGAGTTCTGGAC

mRNA sequence

AGTTAGGTTAGGCGTACGTCTCCCTCTTCTCCGTTTCGCCTCCTCGCGCGCCGTCCGTCTCCGTCTTCTCAGCAGCCGTCCGTCTCCCTCTCGGCTGTCGCTCTCCGATACTCCTTCCGACGGCCATTCTAACAGCCTGCAATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAAATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAAGTTGAATCATTTTGAAGATTTTTACACATAATGTGCATATGTATTTAAACTTATCTTGAGTTCTGGAC

Coding sequence (CDS)

ATGAGGAAATCAGAAGGGCCATCATCACTCAAGAGAAAAAGGCCAGATTTGGGTACGAAAAATTCGTCTGGAGGAGCTCTAATTGGGCAAGAAAAAGTTCTCTATGACCTAATTTGCAGCAAGCAAAGCATGGGGATTTGCACTTTTGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTAGTAACAAAATCCCTCAAGTCTCTTCAAACCAAAGGCCTGATAAAGATAGTCCAACACTATCAAAACAAAGGCAAGAAGTTCTACCTATCAAATGACTTCGAACCAGCTAAGGAATTAACCGGTGGTAACTGGTATCGTGACGGGGAGCTCGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAAAGGAAGAAGTTGATGACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGTGCTTTCAAAGTAGAGTTGTCAAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATCAGGTGATGGAAGTGAAGAGCTCTGGATTTGGTGAATTTGAATTTATTCCAATTGGGAAAATTTGTTATAAGTATTGTACTCAAGGAGGAGGCCTCAAAGGGGAGCCTAAAACAGGGGCAATGGCTTCCATTCCTTGTGGAGTTTGTCCAAGGATCACTTATTGTACCCCAAATGGCATCATTTCTCCTGCTACCTGTGTCTATTATACCAAGTGGTTAGATTTTTAA

Protein sequence

MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF*

Homology

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BLAST of CSPI03G03700 vs. ExPASy Swiss-Prot
Match: Q921X6 (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-23
Identity = 72/232 (31.03%), Postives = 117/232 (50.43%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEG----IVE---SF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E     +++   SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +           P TG + + PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVN-----PILPPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316

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BLAST of CSPI03G03700 vs. ExPASy Swiss-Prot
Match: Q2T9S3 (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-23
Identity = 72/232 (31.03%), Postives = 114/232 (49.14%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +  +        P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVS-----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CSPI03G03700 vs. ExPASy Swiss-Prot
Match: Q9H1D9 (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.9e-23
Identity = 72/232 (31.03%), Postives = 113/232 (48.71%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      KK Y
Sbjct: 91  QEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVY 150

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV-------ESF 149
           +  + +P + +TGG WY D + + +++  L Q C + +Q K     E           SF
Sbjct: 151 MLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSF 210

Query: 150 KQS----------GAFKVELSREQIEEIVNALVLDNQV-MEVKSSGFGEFEFIPIGKICY 209
             S          G  KVELS E IE I+N L+ D +V M + ++  G    +      Y
Sbjct: 211 ASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLY 270

Query: 210 KYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +           P TG +   PCG+CP    C   G ISP+ C+Y T+WL+F
Sbjct: 271 RAVN-----PIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316

[Close]

BLAST of CSPI03G03700 vs. ExPASy Swiss-Prot
Match: Q86JM3 (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=44689 GN=polr3f PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 67/244 (27.46%), Postives = 119/244 (48.77%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           ++ S+  +S K   P+   K    G    ++ ++Y LI +  + G  T ++K  + + + 
Sbjct: 52  IQNSDETTSYKEVNPEDQAKFRGLGV---EDFLIYQLIEASSNTGAWTRELKNSSGYQQV 111

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
            +TK LK+L+++ LIK V+  Q+  KK Y+  + EP++E+TGG  Y D   D  YI  +K
Sbjct: 112 QITKILKTLESRKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMK 171

Query: 121 QVCARMIQRKKLMTIEGIVESFKQ--SGAFKVELSREQIEEIVNALVLDNQVMEVKSSGF 180
                 +  K  + +  I+   ++    A    L  E I+ +VN ++ D  + E++ +  
Sbjct: 172 MHIKTFVDNKGAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRM 231

Query: 181 GEFEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYT 240
           G       G I YK        K         ++PCG CP    C+ NG++SP  CVY+ 
Sbjct: 232 GAMLGRRSG-ILYK------PTKTPIPVNNFCNMPCGNCPVFDICSDNGLVSPKRCVYFK 285

Query: 241 KWLD 243
           ++L+
Sbjct: 292 QYLE 285

[Close]

BLAST of CSPI03G03700 vs. ExPASy Swiss-Prot
Match: Q9VD25 (Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=CG5380 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20
Identity = 63/230 (27.39%), Postives = 104/230 (45.22%), Query Frame = 0


Query: 30  QEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQHYQNKGKKFY 89
           +EKV+Y ++    + GI   D++ ++      + K LK+L+TK LIK V+      KK Y
Sbjct: 79  EEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVY 138

Query: 90  LSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK-----------------L 149
           +  + EP   +TGG WY+D + + ++++ L Q C R +Q K+                  
Sbjct: 139 MLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSC 198

Query: 150 MTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYK 209
            T+  + +     G  KV L+   +E I+  +V D     V+    G F +  +      
Sbjct: 199 CTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQD-GSFVYRAVNAPL-- 258

Query: 210 YCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLD 243
                      P TG +  +PCG+CP I  C+  G ++  TC Y   WLD
Sbjct: 259 -----------PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD 293

[Close]

BLAST of CSPI03G03700 vs. ExPASy TrEMBL
Match: A0A0A0L5W6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.8e-136
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CSPI03G03700 vs. ExPASy TrEMBL
Match: A0A1S3BL06 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC103490992 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.0e-134
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CSPI03G03700 vs. ExPASy TrEMBL
Match: A0A5D3D7H7 (DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00330 PE=3 SV=1)

HSP 1 Score: 489.2 bits (1258), Expect = 1.0e-134
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 5   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 64

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 65  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 124

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 125 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 184

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 185 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 244

Query: 241 LDF 244
           LDF
Sbjct: 245 LDF 247

[Close]

BLAST of CSPI03G03700 vs. ExPASy TrEMBL
Match: A0A5D3CS47 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006860 PE=3 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.3e-129
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 297 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 356

Query: 241 LDF 244
           LDF
Sbjct: 357 LDF 358

[Close]

BLAST of CSPI03G03700 vs. ExPASy TrEMBL
Match: A0A5A7UBI4 (DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003590 PE=3 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.3e-129
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 297 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 356

Query: 241 LDF 244
           LDF
Sbjct: 357 LDF 358

[Close]

BLAST of CSPI03G03700 vs. NCBI nr
Match: XP_004148278.1 (DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypothetical protein Csa_010347 [Cucumis sativus])

HSP 1 Score: 495.0 bits (1273), Expect = 3.8e-136
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CSPI03G03700 vs. NCBI nr
Match: TYK19400.1 (DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa])

HSP 1 Score: 489.2 bits (1258), Expect = 2.1e-134
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 5   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 64

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 65  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 124

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 125 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 184

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 185 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 244

Query: 241 LDF 244
           LDF
Sbjct: 245 LDF 247

[Close]

BLAST of CSPI03G03700 vs. NCBI nr
Match: XP_008448982.1 (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_008448983.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 489.2 bits (1258), Expect = 2.1e-134
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYCTQGGGLKGEPK GAMASIPCGVCPRITYCTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCTQGGGLKGEPKIGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 243

[Close]

BLAST of CSPI03G03700 vs. NCBI nr
Match: TYK13079.1 (DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa])

HSP 1 Score: 472.2 bits (1214), Expect = 2.6e-129
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 117 MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 176

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 177 VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 236

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 237 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 296

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 297 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 356

Query: 241 LDF 244
           LDF
Sbjct: 357 LDF 358

[Close]

BLAST of CSPI03G03700 vs. NCBI nr
Match: XP_008439941.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 472.2 bits (1214), Expect = 2.6e-129
Identity = 234/243 (96.30%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MRKSEGPSSLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60
           M KS+GPSSLKRKRPDL TKNSS GALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES
Sbjct: 1   MSKSQGPSSLKRKRPDLSTKNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAES 60

Query: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120
           VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK
Sbjct: 61  VVTKSLKSLQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLK 120

Query: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGE 180
           QVCARMIQRKKLMTIEGIVESFKQSGAFKVEL+REQIEEIVNALVLDNQV EVKSSGFGE
Sbjct: 121 QVCARMIQRKKLMTIEGIVESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGE 180

Query: 181 FEFIPIGKICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKW 240
           FEFIPIGKICYKYC+Q GGLKGEPKTGAMASIPCGVCPRIT+CTPNGIISPATCVYYTKW
Sbjct: 181 FEFIPIGKICYKYCSQ-GGLKGEPKTGAMASIPCGVCPRITHCTPNGIISPATCVYYTKW 240

Query: 241 LDF 244
           LDF
Sbjct: 241 LDF 242

[Close]

BLAST of CSPI03G03700 vs. TAIR 10
Match: AT5G23710.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-52
Identity = 110/235 (46.81%), Postives = 148/235 (62.98%), Query Frame = 0


Query: 11  KRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ 70
           KRKRPD   K+S G      EK L DLI   Q  G   F++KRE     ++VT+ + SL+
Sbjct: 3   KRKRPD--PKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLR 62

Query: 71  TKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ-- 130
            K LIK V +  NKG K YL+ +FEP  ELTGG WY DG LD   I  LK  C  +++  
Sbjct: 63  KKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERH 122

Query: 131 RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 190
           R++++T+E +   F +    + +LS +Q +EI+  L+LDN +MEVKS+G  EF    IG+
Sbjct: 123 RQRVVTLEVLCGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGE 182

Query: 191 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 244
           +CY+   +  G  GEP+ GA ASIPCGVCP I  C+P+G+ISP TCVY+ KWLDF
Sbjct: 183 VCYRLTGKKFG-NGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230

The following BLAST results are available for this feature:

BLAST of CSPI03G03700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q921X6	2.6e-23	31.03	DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus OX=10090 GN=Polr3f ...	[more]
Q2T9S3	3.4e-23	31.03	DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus OX=9913 GN=POLR3F PE=...	[more]
Q9H1D9	5.9e-23	31.03	DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens OX=9606 GN=POLR3F P...	[more]
Q86JM3	1.1e-21	27.46	DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum OX=4468...	[more]
Q9VD25	1.6e-20	27.39	Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster...	[more]

BLAST of CSPI03G03700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5W6	1.8e-136	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G043930 PE=3 SV=1	[more]
A0A1S3BL06	1.0e-134	98.77	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3D7H7	1.0e-134	98.77	DNA-directed RNA polymerase III subunit rpc6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A5D3CS47	1.3e-129	96.30	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7UBI4	1.3e-129	96.30	DNA-directed RNA polymerase III subunit RPC6-like OS=Cucumis melo var. makuwa OX...	[more]

BLAST of CSPI03G03700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148278.1	3.8e-136	100.00	DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus] >KGN55977.1 hypot...	[more]
TYK19400.1	2.1e-134	98.77	DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo var. makuwa]	[more]
XP_008448982.1	2.1e-134	98.77	PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo] >XP_...	[more]
TYK13079.1	2.6e-129	96.30	DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo var. makuwa]	[more]
XP_008439941.1	2.6e-129	96.30	PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo]	[more]

BLAST of CSPI03G03700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23710.1	1.2e-52	46.81	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 29..93 e-value: 5.4E-15 score: 57.1
IPR007832	RNA polymerase Rpc34	PFAM	PF05158	RNA_pol_Rpc34	coord: 29..135 e-value: 4.7E-26 score: 92.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR016049	RNA polymerase Rpc34-like	PANTHER	PTHR12780	RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED	coord: 25..243
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 30..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G03700.1	CSPI03G03700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008168	methyltransferase activity