CSPI02G15240 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G15240
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 14821792 .. 14822292 (-)
RNA-Seq Expression	CSPI02G15240
Synteny	CSPI02G15240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCTGTAATTTTACCGCCAAACTCGACTTTACTGTCGACCAAACACCAAGAAACTGAGAGACCTGATACCGAGACCCAAAACACACCAGAAACCGCCTCCTCTAACCGAAGACCCATGTGTAGAACAAACACTGCACAATTGAATAAAAACCCACAGCTAAACCAACCTTTAACGGCTCAAAACTCACGGTTAAACCCACTGCTAAACCACGGTCAAGACTGCTGCCGAACATGCCACAAGGACGCCAGAAGAATGCCGCTGAAGTCGTCCTCTCCGCCAAACACTGGAACCCATCAACTGGATAACAGTTTGGAACTCACCGCCAACGCCGTCAATGGAGCGCCGCCTCTCTCTCTGTTTTGTGTGCTTTACGGTAGCCTCACCCTCTCTCTTAGTGTGCTTTTCGGCTGCCCCCTCACTTTCCTCTCTTTTCTTTTGTTTTAATTAAAAGACCTCAAGAGGAAGGTGAAGGATTTGCAAAAAAAAATGTCATTA

mRNA sequence

ATGCAATCTGTAATTTTACCGCCAAACTCGACTTTACTGTCGACCAAACACCAAGAAACTGAGAGACCTGATACCGAGACCCAAAACACACCAGAAACCGCCTCCTCTAACCGAAGACCCATGTGTAGAACAAACACTGCACAATTGAATAAAAACCCACAGCTAAACCAACCTTTAACGGCTCAAAACTCACGGTTAAACCCACTGCTAAACCACGGTCAAGACTGCTGCCGAACATGCCACAAGGACGCCAGAAGAATGCCGCTGAAGTCGTCCTCTCCGCCAAACACTGGAACCCATCAACTGGATAACAGTTTGGAACTCACCGCCAACGCCGTCAATGGAGCGCCGCCTCTCTCTCTGTTTTGTGTGCTTTACGACCTCAAGAGGAAGGTGAAGGATTTGCAAAAAAAAATGTCATTA

Coding sequence (CDS)

ATGCAATCTGTAATTTTACCGCCAAACTCGACTTTACTGTCGACCAAACACCAAGAAACTGAGAGACCTGATACCGAGACCCAAAACACACCAGAAACCGCCTCCTCTAACCGAAGACCCATGTGTAGAACAAACACTGCACAATTGAATAAAAACCCACAGCTAAACCAACCTTTAACGGCTCAAAACTCACGGTTAAACCCACTGCTAAACCACGGTCAAGACTGCTGCCGAACATGCCACAAGGACGCCAGAAGAATGCCGCTGAAGTCGTCCTCTCCGCCAAACACTGGAACCCATCAACTGGATAACAGTTTGGAACTCACCGCCAACGCCGTCAATGGAGCGCCGCCTCTCTCTCTGTTTTGTGTGCTTTACGACCTCAAGAGGAAGGTGAAGGATTTGCAAAAAAAAATGTCATTA

Protein sequence

MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLTAQNSRLNPLLNHGQDCCRTCHKDARRMPLKSSSPPNTGTHQLDNSLELTANAVNGAPPLSLFCVLYDLKRKVKDLQKKMSL

Homology

[Close]

BLAST of CSPI02G15240 vs. ExPASy TrEMBL
Match: A0A0A0LJP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297250 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60
           MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT
Sbjct: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60

Query: 61  AQNSRLNPLLNHGQDCCRTCHKDARRMPLKSSSPPNTGTHQLDNSLELTANAVNGAPPLS 120
           AQNSRLNPLLNHGQDCCRTCHKDA R PLKSSSPPN GTHQLDNSLELTANAVNGAPPLS
Sbjct: 61  AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS 120

Query: 121 LFCVLYDLKRKVKDLQKKMSL 142
           LFCVLYDLKRKVKDLQKK ++
Sbjct: 121 LFCVLYDLKRKVKDLQKKNAI 141

[Close]

BLAST of CSPI02G15240 vs. NCBI nr
Match: KGN62100.1 (hypothetical protein Csa_006137 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60
           MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT
Sbjct: 1   MQSVILPPNSTLLSTKHQETERPDTETQNTPETASSNRRPMCRTNTAQLNKNPQLNQPLT 60

Query: 61  AQNSRLNPLLNHGQDCCRTCHKDARRMPLKSSSPPNTGTHQLDNSLELTANAVNGAPPLS 120
           AQNSRLNPLLNHGQDCCRTCHKDA R PLKSSSPPN GTHQLDNSLELTANAVNGAPPLS
Sbjct: 61  AQNSRLNPLLNHGQDCCRTCHKDAGRTPLKSSSPPNAGTHQLDNSLELTANAVNGAPPLS 120

Query: 121 LFCVLYDLKRKVKDLQKKMSL 142
           LFCVLYDLKRKVKDLQKK ++
Sbjct: 121 LFCVLYDLKRKVKDLQKKNAI 141

The following BLAST results are available for this feature:

BLAST of CSPI02G15240 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G15240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJP6	1.2e-68	95.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297250 PE=4 SV=1	[more]

BLAST of CSPI02G15240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62100.1	2.6e-68	95.74	hypothetical protein Csa_006137 [Cucumis sativus]	[more]

BLAST of CSPI02G15240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G15240.1	CSPI02G15240.1	mRNA