CSPI02G13110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G13110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transmembrane protein
Location	Chr2: 13218738 .. 13219597 (+)
RNA-Seq Expression	CSPI02G13110
Synteny	CSPI02G13110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTGCAATTAAAATACTTTTGAAAAGAAACGAAAGAAAACTACGGACTCAAAACTTTCGCACCGCCACCACTCTATGCTATAAATACTCACTTCTCTCTCTCTCTCTCTCGCTCGCTCGCTCGCTCGTTTCCACTCCCTGTTATCTTCCATTTTCAAACCTTTCAACCTACTCTCTCAAATTCCCCATTGTTGACAGTTCAAAGGTACTGAAAATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAACTGCTAAACCTAATTTAATTGAAAATTCGTTTCATCATATATACTTAATCGTTGTTTTAGTGTAAATTATAAAGAGGATGAGATTGTGATAATCGTGTTAAAAGGATTATGATCCATTTATGTGACGGTAAGGATTGAATAAGGTGTATATGAAATTGAATTATGGCGATGTGTGTTTGTTTGTTTGTTCTTAGATTACATGTGAAGCGTAATTTTTTGTGATTTGGGGATAATCATTCAACTTTTAGACATTGAAGTTTGTTGGATTTGAACTAAGTCAAGTAACAAGGCTATAATCCGTCTTGGCGAACCTGCGAATGAAATCAAGAAAATCATTCAACCACACCTATAAAC

mRNA sequence

CTCTTGCAATTAAAATACTTTTGAAAAGAAACGAAAGAAAACTACGGACTCAAAACTTTCGCACCGCCACCACTCTATGCTATAAATACTCACTTCTCTCTCTCTCTCTCTCGCTCGCTCGCTCGCTCGTTTCCACTCCCTGTTATCTTCCATTTTCAAACCTTTCAACCTACTCTCTCAAATTCCCCATTGTTGACAGTTCAAAGGTACTGAAAATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAACTGCTAAACCTAATTTAATTGAAAATTCGTTTCATCATATATACTTAATCGTTGTTTTAGTGTAAATTATAAAGAGGATGAGATTGTGATAATCGTGTTAAAAGGATTATGATCCATTTATGTGACGGTAAGGATTGAATAAGGTGTATATGAAATTGAATTATGGCGATGTGTGTTTGTTTGTTTGTTCTTAGATTACATGTGAAGCGTAATTTTTTGTGATTTGGGGATAATCATTCAACTTTTAGACATTGAAGTTTGTTGGATTTGAACTAAGTCAAGTAACAAGGCTATAATCCGTCTTGGCGAACCTGCGAATGAAATCAAGAAAATCATTCAACCACACCTATAAAC

Coding sequence (CDS)

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGTCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTGTTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGCAGCGCGTGGTAA

Protein sequence

MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIILVLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW*

Homology

[Close]

BLAST of CSPI02G13110 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.0e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CSPI02G13110 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCL+SMDSSPRYYACPC+RGWKM+CRCG GSAW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of CSPI02G13110 vs. ExPASy TrEMBL
Match: A0A2I0LDH6 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.6e-12
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 3  YCYGCK-PRPS-GPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK P PS GP+P  +LL L +  I IALS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRCLASMDSSPRYYA-CPCDRGWKMHCRC 91
          L +V  L+S+D   ++Y   PC R WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

[Close]

BLAST of CSPI02G13110 vs. ExPASy TrEMBL
Match: A0A1R3JDI7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 3  YCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLLAVPIIILV 62
          YC  C  RPS P+P  +LL LA+  +L+ALSSL   E  ++ +E  + W +L   + +LV
Sbjct: 10 YCGRCHRRPSSPMPYSVLLFLALALMLLALSSLIKFEIVLESAEDSMTWLVLLAVLALLV 69

Query: 63 LVRCLASMDSSPRYYACPCDR--GWK 86
          +VRCL+S DS  + + C C R   WK
Sbjct: 70 VVRCLSSTDSCRQPHYCGCGRCIKWK 95

[Close]

BLAST of CSPI02G13110 vs. ExPASy TrEMBL
Match: A0A6J1AFV4 (uncharacterized protein LOC110417586 OS=Herrania umbratica OX=108875 GN=LOC110417586 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.4e-07
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 3  YCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLLAVPIIILV 62
          YC  C+ RPS PLP  +LL LA+  +L+ALSSL   E  ++ +E  + W +L   + +LV
Sbjct: 10 YCGRCR-RPSSPLPYSVLLFLALALMLLALSSLIKFEIAMESAEDNMTWLVLLAALALLV 69

Query: 63 LVRCLASMDSSPRYYACPCDR--GWK 86
          LVR L+ MDS  R + C C R   WK
Sbjct: 70 LVRWLSPMDSCRRPHYCGCGRCTSWK 94

[Close]

BLAST of CSPI02G13110 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.2e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CSPI02G13110 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 4.5e-48
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCL+SMDSSPRYYACPC+RGWKM+CRCG GSAW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of CSPI02G13110 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVRCL+++DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRG-AW 95

[Close]

BLAST of CSPI02G13110 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 79/96 (82.29%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KP PSGPLPGPIL+LL VVFILI LSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 97
          VLVR L+S+DSS R+  C CDRGWKMHCRC  G AW
Sbjct: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRHG-AW 93

[Close]

BLAST of CSPI02G13110 vs. NCBI nr
Match: PKI78722.1 (hypothetical protein CRG98_000947 [Punica granatum])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 3  YCYGCK-PRPS-GPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK P PS GP+P  +LL L +  I IALS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LVLVRCLASMDSSPRYYA-CPCDRGWKMHCRC 91
          L +V  L+S+D   ++Y   PC R WK  C C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFCYC 96

[Close]

BLAST of CSPI02G13110 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 4  CYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLL-AVPIIILV 63
          C  C+   S   P P+++++ V  +L+ALSS+   E  +   E  ++W LL AVP+ +L 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLASMDSSPR-YYACPCDRGWKMHC 89
           VRCL+ +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

[Close]

BLAST of CSPI02G13110 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 14 PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILVLVRCLASMDS 72
          PLP P+LL+LAV  + +  S  F   E  + +E QIN+ LL +P+ ++VLVR L+SM++
Sbjct: 18 PLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

The following BLAST results are available for this feature:

BLAST of CSPI02G13110 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G13110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB6	1.0e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1	[more]
A0A5D3BJW1	2.2e-48	95.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2I0LDH6	9.6e-12	47.83	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1	[more]
A0A1R3JDI7	1.4e-07	41.86	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1	[more]
A0A6J1AFV4	5.4e-07	44.19	uncharacterized protein LOC110417586 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]

BLAST of CSPI02G13110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61893.1	2.2e-50	100.00	hypothetical protein Csa_006600 [Cucumis sativus]	[more]
KAA0045689.1	4.5e-48	95.83	hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995...	[more]
KAG6571042.1	3.9e-44	89.58	hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605007.1	1.5e-35	82.29	hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PKI78722.1	2.0e-11	47.83	hypothetical protein CRG98_000947 [Punica granatum]	[more]

BLAST of CSPI02G13110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21185.1	1.4e-07	37.50	unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter...	[more]
AT2G21180.1	1.3e-05	44.07	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF32	SUBFAMILY NOT NAMED	coord: 1..96
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G13110.1	CSPI02G13110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane