CSPI01G25790 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G25790
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 21181869 .. 21182243 (-)
RNA-Seq ExpressionCSPI01G25790
SyntenyCSPI01G25790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCGCGGAGAGGCAATAGCTTCCAAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACACCAAGACGCAGCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTCTTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

mRNA sequence

ATGTCCCGCGGAGAGGCAATAGCTTCCAAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACACCAAGACGCAGCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTCTTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Coding sequence (CDS)

ATGTCCCGCGGAGAGGCAATAGCTTCCAAAGAATCAGATTCAATGTGCAGCGAGGGAATAGAGTTACCAAACTGTTCACGCTTTCACCTCGACCACCTTGATTTTCCACATTATTCTAAATCTTTTGAAACCCACACCAATCAAAGAACCAGGGGAGTCACCAACGATCCAAACAATTTCTCCCAAACCAGAAGCATTACACCAAGACGCAGCAGCATTCATCTTCCAACTATCCTCCGACGGATTCCAAGTGTCGAGACTAAACCCCTTCTTAGGCGCCAAATCAAGGGAGCTCGAGACGATAGCAAAGGATTCTTGGATAGTCCTGCAATGAATTTGCACCAAGCTCGACACCAACAGACAACACCGGCGTAA

Protein sequence

MSRGEAIASKESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITPRRSSIHLPTILRRIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLHQARHQQTTPA*
Homology
[Close]
BLAST of CSPI01G25790 vs. ExPASy TrEMBL
Match: A0A0A0LW98 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560850 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.4e-61
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 1   MSRGEAIASKESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIAS+ESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITPRRSSIHLPTILRRIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLHQARHQQ 120
           SQTRSIT RR SIHLPTILRRIPSVETKPLLRRQIKGARDDSKG LDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]
BLAST of CSPI01G25790 vs. ExPASy TrEMBL
Match: A0A0A0KDY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111920 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.8e-18
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0 

Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITPRRSSIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+ITPR   IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGFLDS 109
           K LLR QIKGA DD+KGFLDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

[Close]
BLAST of CSPI01G25790 vs. ExPASy TrEMBL
Match: A0A5A7U6P5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G001040 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.0e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 81  RIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLH 115
           ++PSVETK LLRRQIKGARDDSKGFLDSPA NLH
Sbjct: 31  KLPSVETKLLLRRQIKGARDDSKGFLDSPATNLH 64

[Close]
BLAST of CSPI01G25790 vs. NCBI nr
Match: KGN66003.1 (hypothetical protein Csa_006997 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 1   MSRGEAIASKESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60
           MSRGEAIAS+ESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF
Sbjct: 1   MSRGEAIASEESDSMCSEGIELPNCSRFHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNF 60

Query: 61  SQTRSITPRRSSIHLPTILRRIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLHQARHQQ 120
           SQTRSIT RR SIHLPTILRRIPSVETKPLLRRQIKGARDDSKG LDSPAMNLHQARHQQ
Sbjct: 61  SQTRSITSRRISIHLPTILRRIPSVETKPLLRRQIKGARDDSKGLLDSPAMNLHQARHQQ 120

Query: 121 TTPA 125
           TTPA
Sbjct: 121 TTPA 124

[Close]
BLAST of CSPI01G25790 vs. NCBI nr
Match: KGN46602.1 (hypothetical protein Csa_005079 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-18
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0 

Query: 28  FHLDHLDFPHYSKSFETHTNQRTRGVTNDPNNFSQTRSITPRRSSIHLPTILRRIPSVET 87
           FHL+HLDF  +SKS ETHTN++T G TN+P     TR+ITPR   IHLPTIL R+ S+ET
Sbjct: 7   FHLEHLDFSRHSKSLETHTNKKTSGATNNPP--FHTRNITPRCICIHLPTILWRLLSIET 66

Query: 88  KPLLRRQIKGARDDSKGFLDS 109
           K LLR QIKGA DD+KGFLDS
Sbjct: 67  KLLLRHQIKGAPDDNKGFLDS 85

[Close]
BLAST of CSPI01G25790 vs. NCBI nr
Match: KAA0050974.1 (hypothetical protein E6C27_scaffold761G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.4e-06
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 81  RIPSVETKPLLRRQIKGARDDSKGFLDSPAMNLH 115
           ++PSVETK LLRRQIKGARDDSKGFLDSPA NLH
Sbjct: 31  KLPSVETKLLLRRQIKGARDDSKGFLDSPATNLH 64

The following BLAST results are available for this feature:
BLAST of CSPI01G25790 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G25790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW986.4e-6196.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560850 PE=4 SV=1[more]
A0A0A0KDY31.8e-1866.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G111920 PE=4 SV=1[more]
A0A5A7U6P57.0e-0788.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CSPI01G25790 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66003.11.3e-6096.77hypothetical protein Csa_006997 [Cucumis sativus][more]
KGN46602.13.7e-1866.67hypothetical protein Csa_005079 [Cucumis sativus][more]
KAA0050974.11.4e-0688.24hypothetical protein E6C27_scaffold761G001040 [Cucumis melo var. makuwa][more]
BLAST of CSPI01G25790 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25790.1CSPI01G25790.1mRNA