CSPI01G05320 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G05320
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glycine-rich RNA-binding protein 4
Location	Chr1: 3452033 .. 3455414 (+)
RNA-Seq Expression	CSPI01G05320
Synteny	CSPI01G05320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAACAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCACCTTCATCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGTTGGTTTTCTTTCTCTCAGTTGTGTATTTAGTCATAATTTGGCTGGTTATGTATGTGGAGACAATTTGGATTGCTTGAATCATTACAACTTCACGCGTGCAGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTCGAGTAGTAGTTCTCTTGTGCATTCTGAACGTTCAATTATGTCTCAATTGTCGATATCTGGCGCTAACTGTTATCATTTGTTATTAAATTCAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATACTCTGTCTATTTTCTTCCAAACGAGTGTAATTGTTTTCTTCTGTGTTATGCATTATCCTCTTAATCGCCAAAATCCACTTCAAATGCCCATTTCTCTCATTCACTTCGATTTTGGTAATGCATACGATTAGCCTTCTTGAATTATATCTGATTTACTCAGCAACTCTAGCTGAAGACGGTAAATCCATCTATAAGAACTCTAAATAACTATAATCCACTCCAGAATTTGCGAGGTTTAATTCCTTTAACTGCCAGAGCAAGCCTTTCAGTATTTATGATATAAAATCACAGACATTATAACACACCAGTTTAGGCTTTACACAAAGGGGCAATAAACCTTGAAGTTCTCTATAATTTTAGCTAGAGAATAGATATCTAGAAAGGAAAAGCTGGATGCGATAGATTTAAAGTCGCATTTAGAGGACATAAGGTAGCGTCCATCCAGATCCAGTTATTCTTAATCATTGCTTCCTTTCCGAACTGTGGAACATTATAACTGTTATACCTTCAAACGAAAAAAAATGAACTTCAATAGATAGTTAATAGCTGAATGTTCATATAAGCATTAGGTATTCATAACCTTGTTTTATTGCATTGGTGAACGTGTATATCAGCAGATAGATTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCAAGTGACTGAACCTGCCCTCGCAGTTTCTGTTTTACCACATACAAAACCTTGGATGGAACTCACTAGAGCTTTGCAAATGATCTAAATATTGAATAGACATTGCCTCTTCCCCTGTCTCCTGAGCCAAGTGAAACTTACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTAGCGATCACTTACCATCGAAACTAAATAGTTCCAACTAACTTCGGCTAAGGGCAGAAGTGTTTAAAGCAAAACATTAGTGTTTTTAAAATTTCACAATGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTCTGGGTAAATTTTCATCTTTCTAAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGTCCTTCATATTATAAGTAAACCATGGGGAAGGCTTAGGAGGCCTATCAAATACCGCAACCAAAATATAAAATGTTTCTTGAATATTCGGCATGCTCCACATAACTGATTGTAATAAAATTCAGTACAATTTAATATGGACTTGGAAGAGAACTGATTAAAGATGGTTAAACCCTAATTTGTGGCTTGACTTGTCATAGAACGATCCCTGTTCAATGAACTTGTTATAAAAAGGATTTATTTGTAATTAAAGTTTCAAACTCAAATCACACTATATTCAATATTCACGTTTATAGCTAAAAATTTGTGTATCCGAGTGCACAGTACCACTGTTAAATTTAAGTGTACATTTTGGCCTCGAGGTTTCCTCCAATTTATAGTGACAGCTACGTTTGTCGAAGTTAACAGTCAAAGAACTTATTCCCAGGTTTATTTGATGGATATACCCTTCCCACCTCTTCTCATCGGGAAACATGAATTGATATGATATTCTCTTCTCGAATTCCATGGATAAAATTCCGATGCTTCCTAAAGAGAAAAAGGCTACTTTTGAAATCAAGCTTGTAGCTGGGAGGGTCTGATCTATGCCAACCAATTATAGAAGATTTTTGTTTTTATTTATTTATAATAAATAAAAAGAAAAGAGAATCTGTGATGATCTTGTTGTCTTATCTTTTTTGGTGCATCTAATTTTCAATTACAGCAGCATCATGAACTAATAGGGGAAACTTTGATTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTAAGTGTATTTTAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAACCATCAGTGTAATGCATATTAAAACTGATAATTAATGATATTGACTTTGTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGAGGAA

mRNA sequence

GGACTAAGAAAACTGGGGTACAATCCGCTAATATTCCGGATTGCGAATTCCTCGAAATCAAACTGTTTAGCGGCTTTGGGGTGGAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAACAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCACCTTCATCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAATGCATGCTTTAGTATATAGGCATCATTGTACCCCCAAAGTTCAGATTCATTTTTATAAGAGCCCAAACATATTTTAGGAATATATATATAACTAAGGGTTGGGCTCTGCATTGTTATTGGTTTGCGAAACCTTGATCTTGACTATATGATTATAATATAGTCTAAGTGTATTTTAGGAGCAGTGTTCTGTCTTGAAATTAAGTGGTATTAATATTGGGGATTGGTACAGTGGATAACCTAACCAAACATGAACTTCTAAGGCATGGTCTATGGTCAAGGTCCACAGGTTGTAACACGTATATGTGAATGCTTAAATCATGAGAAGCGCAGATTTTTAGAAATATTAAGAAGAGGACTTTTAGGGCTGTTGATTGATACTAGACATGTACCCGTGAGAGAAAGTGTGGGACATAGTTGAAACAAACAAGAAGGGCCCCTTCCCGTTCCGTCCGTGCTGAATTCTGTCGTCAGGAACAAAGATATAATTAAGCCAAGGACAAGTCAACGATTCCCCTTGGAATCACAGGCACCTATAGAATTTTGAAGTTTATTTAAACTAATAAGTTTCCTCGGTTTTTGTACTTAGGTTGTTCATGAACCATCAGTGTAATGCATATTAAAACTGATAATTAATGATATTGACTTTGTAATGACAAATGTTGTGGTCAAGGTGTTGGAGAATAAAGGAGGAA

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCGAAACCATTCTTTCAGCTTCAGACTACTCATCACAACAGTATCAGTTCAACCGAGACGCGTATGCGAATTCGAAGCATTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGATTCACTGCTCTTTTCAGTAGCGTGTGTCTCTTCTTCACCTTCACCTTCATCTTCTCCCAGAAGATACACACCTTCAACCAGGCTCTACATCAGTGGACTTTCGTTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATTTGGTGATGGATAGACTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAATCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAGTTGCAAAGTCCAGATCGGAGCTACGCCAAGGCCTTGAAGAAAACTCTAGTTAA

Protein sequence

MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQSISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS*

Homology

[Close]

BLAST of CSPI01G05320 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-32
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 54  SARKTQSISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S     SS SP SS     P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSS--GPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSEL 172
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of CSPI01G05320 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-18
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 74  SSPSPSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180
           F F+RYA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of CSPI01G05320 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 40/83 (48.19%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           RL+++GLSF T+E++LR AF+ FG+LVEV ++MDR++ R +G+AF+ Y +EE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 150 MHGKFLDGRVIFVEVAKSRSELR 173
           M+G+ ++G +I V+VAK+RS  R
Sbjct: 360 MNGQIINGWMIVVDVAKTRSRDR 382

[Close]

BLAST of CSPI01G05320 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.1e-17
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 66  LFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQG 175
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of CSPI01G05320 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17
Identity = 41/95 (43.16%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 79  SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYA 138
           S + +    + RL+++GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y 
Sbjct: 285 SEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYT 344

Query: 139 SEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQ 174
           +EE    A++ M+G+ ++G +I V+VAK RS  RQ
Sbjct: 345 TEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of CSPI01G05320 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.6e-89
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CSPI01G05320 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.3e-80
Identity = 161/180 (89.44%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHN+I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of CSPI01G05320 vs. ExPASy TrEMBL
Match: A0A6J1KDG6 (organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492861 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 4.0e-72
Identity = 150/180 (83.33%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGL F  +A P PFFQLQ+T +N+I ST TRMRI+SIQSKLAYS+TPLPFFS +KT+S
Sbjct: 1   MTAGLLF--SAVPIPFFQLQSTDYNNIRSTVTRMRIQSIQSKLAYSTTPLPFFSVKKTRS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFSV CVSSSPSP  SPRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 61  ISDSPLFSVTCVSSSPSP--SPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 176

[Close]

BLAST of CSPI01G05320 vs. ExPASy TrEMBL
Match: A0A6J1GCJ4 (organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452900 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.8e-71
Identity = 149/180 (82.78%), Postives = 163/180 (90.56%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGL F  +AAP PFFQLQ+  +N I ST TRMRI+SIQSKLAYS+TP PFFS +KT+S
Sbjct: 29  MTAGLLF--SAAPIPFFQLQSIDYNDIRSTVTRMRIQSIQSKLAYSTTPPPFFSVKKTRS 88

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFSV CVSSSPSP  SPRRY+PSTRLY+SGLSFRTTEESLRNAF SFGQLVEVNL
Sbjct: 89  ISDSPLFSVTCVSSSPSP--SPRRYSPSTRLYVSGLSFRTTEESLRNAFTSFGQLVEVNL 148

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKS+ ELRQGL+ENSS
Sbjct: 149 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSKWELRQGLKENSS 204

[Close]

BLAST of CSPI01G05320 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.1e-67
Identity = 139/155 (89.68%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHHN+I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFL 156
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 7.5e-89
Identity = 178/180 (98.89%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 161/180 (89.44%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHN+I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 7.8e-78
Identity = 157/180 (87.22%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGL FTV AAPKPFFQ Q THHN+I STET  RI SI+S+LAYSSTPLPFFS RKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDS LFS+AC SSSPSP  SPRRYTPSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSPLFSLACASSSPSP--SPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180
           VMD++ANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGL+ENSS
Sbjct: 121 VMDKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: XP_011649654.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CSPI01G05320 vs. NCBI nr
Match: XP_031743837.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Cucumis sativus] >KAE8652500.1 hypothetical protein Csa_013675 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 1.2e-73
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFQLQTTHHNSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFQLQTTHH+SISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120
           ISDSLLFSVACVSSSPS SSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 154
           VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGK 153

[Close]

BLAST of CSPI01G05320 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-34
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 54  SARKTQSISDSLLFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFG 113
           SAR+ + I   L+ S     SS SP SS     P T+LY+SGLSFRTTE++LR+ F+ FG
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSS--GPKTKLYVSGLSFRTTEDTLRDTFEQFG 103

Query: 114 QLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSEL 172
            L+ +N+VMD++ANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK+RS++
Sbjct: 104 NLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of CSPI01G05320 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.7 bits (234), Expect = 7.9e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 74  SSPSPSSSPRR--YTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRG 133
           S  + S +P R    PST L++SGLS RTT E LR AF  FG++ +  +V DR++   +G
Sbjct: 39  SPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKG 98

Query: 134 FAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENS 180
           F F+RYA+ E+S K I GM GKFLDG VIF E A+ R + +    +N+
Sbjct: 99  FGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of CSPI01G05320 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 88  STRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAI 147
           S +L++S LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + SE++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 148 EGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 181
           + + GK +DGR+IFVEVAK+  E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of CSPI01G05320 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 66  LFSVACVSSSPSPSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRL 125
           L SV  ++SS S   + RR   S +L+I GLSF TTE+ L  AF   GQ+VE  +VMDR+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVAS-KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRV 71

Query: 126 ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQG 175
           ++R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK++  L  G
Sbjct: 72  SDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of CSPI01G05320 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-18
Identity = 38/79 (48.10%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 90  RLYISGLSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEG 149
           +L+I+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AFL Y +EE +  A++ 
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 150 MHGKFLDGRVIFVEVAKSR 169
           M+GK ++G +I V+VAK++
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361

The following BLAST results are available for this feature:

BLAST of CSPI01G05320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	1.4e-32	60.17	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	1.1e-18	46.30	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
C0HFE5	2.1e-17	48.19	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q9FFZ6	2.1e-17	45.87	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q6YWP9	3.6e-17	43.16	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of CSPI01G05320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB8	3.6e-89	98.89	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A1S3AYF6	5.3e-80	89.44	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A6J1KDG6	4.0e-72	83.33	organelle RRM domain-containing protein 6, chloroplastic-like OS=Cucurbita maxim...	[more]
A0A6J1GCJ4	5.8e-71	82.78	organelle RRM domain-containing protein 6, chloroplastic OS=Cucurbita moschata O...	[more]
A0A5A7SXY0	5.1e-67	89.68	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of CSPI01G05320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649648.1	7.5e-89	98.89	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]
XP_008439477.1	1.1e-79	89.44	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_038895072.1	7.8e-78	87.22	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_011649654.1	1.2e-73	98.69	organelle RRM domain-containing protein 6, chloroplastic isoform X2 [Cucumis sat...	[more]
XP_031743837.1	1.2e-73	98.69	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Cucumis sat...	[more]

BLAST of CSPI01G05320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	9.6e-34	60.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	7.9e-20	46.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.0e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.5e-18	45.87	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G20930.1	9.7e-18	48.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..163 e-value: 4.9E-25 score: 99.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 91..160 e-value: 8.3E-19 score: 67.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..167 score: 19.58716
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 90..163 e-value: 0.0031 score: 26.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 54..174 e-value: 4.7E-29 score: 103.3
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..179
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 3..179
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 75..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G05320.1	CSPI01G05320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding