Bhi09G002178 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002178
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	30S ribosomal protein S14, chloroplastic
Location	chr9: 70054166 .. 70054525 (+)
RNA-Seq Expression	Bhi09G002178
Synteny	Bhi09G002178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAGGAATTGAATCATTATGGCAAGGAAAAGTTTAATTCAGAGGGAGAAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCGATCTTTAAAAAAAGAAATAAGCAAAGTTCCATCGTTGAGTGAGAAATGGGAAATTCATGGAAAGTTACAATCCCCACCGCGTAATAGTGCACCCACACGTTTCATCGACGTTGTTTTTTAACCGGAAGACCGAGAGCTAACTATCGAGATTTGGGCTCTCTGGACACATACTTCGTGAATGGTTCATGCATGCTTGTTGCCTGGGCAACAAAATCAAGTTGGTAAGGATTCAAATATCCCTTTCTATTCATTTCTATGATCATAGAGG

mRNA sequence

ACTAGGAATTGAATCATTATGGCAAGGAAAAGTTTAATTCAGAGGGAGAAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCGATCTTTAAAAAAAGAAATAAGCAAAGTTCCATCGTTGAGTGAGAAATGGGAAATTCATGGAAAGTTACAATCCCCACCGCGTAATAGTGCACCCACACGTTTCATCGACGTTGTTTTTTAACCGGAAGACCGAGAGCTAACTATCGAGATTTGGGCTCTCTGGACACATACTTCGTGAATGGTTCATGCATGCTTGTTGCCTGGGCAACAAAATCAAGTTGGTAAGGATTCAAATATCCCTTTCTATTCATTTCTATGATCATAGAGG

Coding sequence (CDS)

ATGGCAAGGAAAAGTTTAATTCAGAGGGAGAAGAAGAGGCAAAAATTGGAACAAAAATATCATTTGATTCGTCGATCTTTAAAAAAAGAAATAAGCAAAGTTCCATCGTTGAGTGAGAAATGGGAAATTCATGGAAAGTTACAATCCCCACCGCGTAATAGTGCACCCACACGTTTCATCGACGTTGTTTTTTAA

Protein sequence

MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTRFIDVVF

Homology

[Close]

BLAST of Bhi09G002178 vs. TAIR 10
Match: ATCG00330.1 (chloroplast ribosomal protein S14 )

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-22
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MA+KSLI REKKRQKLE+KYHLIRRS KKEISK+PSLSEKW+IHGKLQSPPRNSAPTR
Sbjct: 1  MAKKSLIYREKKRQKLEKKYHLIRRSSKKEISKIPSLSEKWKIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy Swiss-Prot
Match: Q4VZN5 (30S ribosomal protein S14, chloroplastic OS=Cucumis sativus OX=3659 GN=rps14 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIR+SLK EISKVPSLSEKWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRQSLKNEISKVPSLSEKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy Swiss-Prot
Match: Q14FF9 (30S ribosomal protein S14, chloroplastic OS=Populus alba OX=43335 GN=rps14 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRS KKEISKVPSLS+KWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSDKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy Swiss-Prot
Match: A4GYQ8 (30S ribosomal protein S14, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps14 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRS KKEISKVPSLS+KWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSSKKEISKVPSLSDKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy Swiss-Prot
Match: B1NWE8 (30S ribosomal protein S14, chloroplastic OS=Manihot esculenta OX=3983 GN=rps14 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.7e-23
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHL+RRS KKEISKVPSLS+KWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLMRRSSKKEISKVPSLSDKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy Swiss-Prot
Match: A6MM34 (30S ribosomal protein S14, chloroplastic OS=Buxus microphylla OX=153571 GN=rps14 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-22
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKR+KLEQKYHLIRRS KKEISKVPSLS+KWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRKKLEQKYHLIRRSSKKEISKVPSLSDKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy TrEMBL
Match: A0A6H0ESP9 (30S ribosomal protein S14, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps14 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy TrEMBL
Match: A0A1P8LE66 (Ribosomal protein S14 OS=Citrullus mucosospermus OX=519315 GN=rps14 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy TrEMBL
Match: A0A6M3RTR8 (30S ribosomal protein S14, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rps14 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy TrEMBL
Match: A0A2Z2CGL0 (30S ribosomal protein S14, chloroplastic OS=Coccinia grandis OX=387127 GN=rps14 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 58

[Close]

BLAST of Bhi09G002178 vs. ExPASy TrEMBL
Match: X2F0X5 (30S ribosomal protein S14, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps14 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 59
          MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR
Sbjct: 1  MARKSLIQREKKRQKLEQKYHLIRRSLKKEISKVPSLSEKWEIHGKLQSPPRNSAPTR 58

The following BLAST results are available for this feature:

BLAST of Bhi09G002178 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00330.1	1.3e-22	89.66	chloroplast ribosomal protein S14	[more]

BLAST of Bhi09G002178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN5	3.4e-23	96.55	30S ribosomal protein S14, chloroplastic OS=Cucumis sativus OX=3659 GN=rps14 PE=...	[more]
Q14FF9	3.4e-23	96.55	30S ribosomal protein S14, chloroplastic OS=Populus alba OX=43335 GN=rps14 PE=3 ...	[more]
A4GYQ8	3.4e-23	96.55	30S ribosomal protein S14, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps14...	[more]
B1NWE8	7.7e-23	94.83	30S ribosomal protein S14, chloroplastic OS=Manihot esculenta OX=3983 GN=rps14 P...	[more]
A6MM34	1.0e-22	94.83	30S ribosomal protein S14, chloroplastic OS=Buxus microphylla OX=153571 GN=rps14...	[more]

BLAST of Bhi09G002178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ESP9	1.1e-21	100.00	30S ribosomal protein S14, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A1P8LE66	1.1e-21	100.00	Ribosomal protein S14 OS=Citrullus mucosospermus OX=519315 GN=rps14 PE=3 SV=1	[more]
A0A6M3RTR8	1.1e-21	100.00	30S ribosomal protein S14, chloroplastic OS=Trichosanthes kirilowii var. japonic...	[more]
A0A2Z2CGL0	1.1e-21	100.00	30S ribosomal protein S14, chloroplastic OS=Coccinia grandis OX=387127 GN=rps14 ...	[more]
X2F0X5	1.1e-21	100.00	30S ribosomal protein S14, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rps14...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1480		coord: 1..62 e-value: 1.2E-15 score: 59.5
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 2..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002178	Bhi09M002178	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome