Bhi09G000553 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000553
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Rx_N domain-containing protein
Location	chr9: 14266933 .. 14267094 (-)
RNA-Seq Expression	Bhi09G000553
Synteny	Bhi09G000553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCCACAAAACTGGGTTCTCTAGTTTCTGAAGAACTTGGAATGCTATGGGGACTCAAGGATGATCTTACCGAACTTGAGAGTAAAGTTGCTACAATTCAGGCTGCACTTCATGATGCGAACAAGCGCCAAACAAGGTCATTTTTTGAAGGATCAGCTTGA

mRNA sequence

ATCTCCACAAAACTGGGTTCTCTAGTTTCTGAAGAACTTGGAATGCTATGGGGACTCAAGGATGATCTTACCGAACTTGAGAGTAAAGTTGCTACAATTCAGGCTGCACTTCATGATGCGAACAAGCGCCAAACAAGGTCATTTTTTGAAGGATCAGCTTGA

Coding sequence (CDS)

ATCTCCACAAAACTGGGTTCTCTAGTTTCTGAAGAACTTGGAATGCTATGGGGACTCAAGGATGATCTTACCGAACTTGAGAGTAAAGTTGCTACAATTCAGGCTGCACTTCATGATGCGAACAAGCGCCAAACAAGGTCATTTTTTGAAGGATCAGCTTGA

Protein sequence

ISTKLGSLVSEELGMLWGLKDDLTELESKVATIQAALHDANKRQTRSFFEGSA

Homology

[Close]

BLAST of Bhi09G000553 vs. ExPASy TrEMBL
Match: A0A6J1GPK9 (putative disease resistance protein RGA4 OS=Cucurbita moschata OX=3662 GN=LOC111456321 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1  ISTKLGSLVSEELGMLWGLKDDLTELESKVATIQAALHDANKRQTRSFF 50
          I  KL SL S++LGMLWG+KD+LTEL+S V+ I+A + DA +RQT+S F
Sbjct: 13 IIKKLSSLASQQLGMLWGVKDELTELKSSVSAIKAVVLDAEERQTKSHF 61

[Close]

BLAST of Bhi09G000553 vs. ExPASy TrEMBL
Match: A0A6J1DP92 (putative disease resistance protein RGA4 OS=Momordica charantia OX=3673 GN=LOC111022938 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  ISTKLGSLVSEELGMLWGLKDDLTELESKVATIQAALHDANKRQTRS 48
          I  KL S  S++LGMLWGLK+DLT+L + V+TI+A L DA +RQT+S
Sbjct: 13 ILMKLSSEASQQLGMLWGLKNDLTKLTNSVSTIKALLLDAEERQTKS 59

[Close]

BLAST of Bhi09G000553 vs. ExPASy TrEMBL
Match: A0A6J1JVS7 (putative disease resistance protein RGA3 OS=Cucurbita maxima OX=3661 GN=LOC111488319 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 4   KLGSLVSEELGMLWGLKDDLTELESKVATIQAALHDANKRQTRSFF 50
           KL SL S++LGMLWG+KD+LTEL+S V+ I+A + DA + QT+S F
Sbjct: 235 KLSSLASQQLGMLWGVKDELTELKSSVSAIKAVVLDA-EEQTKSHF 279

[Close]

BLAST of Bhi09G000553 vs. ExPASy TrEMBL
Match: I1HV16 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g60260v3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1  ISTKLGSLVSEELGMLWGLKDDLTELESKVATIQAALHDANKRQTRSFFEGSA 54
          ++TKLG LV +E+ +LWG +DD+  +E K+  ++A +HDA+ R  R   +G+A
Sbjct: 10 LATKLGELVKDEIALLWGFRDDVEGIEEKMKDLEAVMHDADDRLRRGERDGAA 62

[Close]

BLAST of Bhi09G000553 vs. ExPASy TrEMBL
Match: A0A2K2DH08 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g60260v3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-04
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1  ISTKLGSLVSEELGMLWGLKDDLTELESKVATIQAALHDANKRQTRSFFEGSA 54
          ++TKLG LV +E+ +LWG +DD+  +E K+  ++A +HDA+ R  R   +G+A
Sbjct: 10 LATKLGELVKDEIALLWGFRDDVEGIEEKMKDLEAVMHDADDRLRRGERDGAA 62

The following BLAST results are available for this feature:

BLAST of Bhi09G000553 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000553 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPK9	1.1e-06	59.18	putative disease resistance protein RGA4 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DP92	2.8e-05	59.57	putative disease resistance protein RGA4 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1JVS7	1.4e-04	58.70	putative disease resistance protein RGA3 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
I1HV16	2.4e-04	41.51	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g60260v3 P...	[more]
A0A2K2DH08	2.4e-04	41.51	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g60260v3 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..43
None	No IPR available	GENE3D	1.20.5.4130		coord: 1..48 e-value: 3.4E-9 score: 38.7
IPR041118	Rx, N-terminal	PFAM	PF18052	Rx_N	coord: 3..46 e-value: 6.0E-9 score: 36.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000553	Bhi09M000553	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding