Bhi06G001058 (gene) Wax gourd (B227) v1

Overview
NameBhi06G001058
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
Locationchr6: 35108027 .. 35108646 (+)
RNA-Seq ExpressionBhi06G001058
SyntenyBhi06G001058
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCATCGAAATGCAAAAGGACTGAGAAACAAGTCTTTTCCATTCCACAGACAGTTAGCCTTTATTTTTGGAAAAGATAGAGCCAATGGACTTGGTGCAGAAGGTCCAACTAACATGTTTAAAGCAGTAGAGCGAGAAATGGACAACAATAAGTTTTGGAGAGAAATGGATAGTTTTTATGTGCCTGATCCACCAATAATTGGAGGGGAAGAAGTGGATGGACCTACCTCAATGAGTGAAGCGGCAACAAATATACAATCTAGTGCACATACATCAAATAGGTCTAGTAAGAAAAGAGCAAGAAATATGGACCATTGGTGACGATAGTGAATGGTCTTGAGAATGTTATGAGTAGTCATCTTTCAAGCACTAATGATAACATTCAAGAAATTGTTATGTTTTATCGACAGGTAGCTGAACGAGAGTCTACAAGAGAAGCACGTCGAAACTCATTAGTTAGTGAAATTAGAAAGGTATATGGATTAAGTGTTCGACAAAGGGTGAGAGTGGGTAAGATTATCACTAAAGACCAATCTCATATTGATTATTTCTTTAATCTTCCACATGTTGAAAGATATGAAATCATAATGGAGGTTTTGCAAAAAGACGTTCATTCTTAA

mRNA sequence

AGTCATCGAAATGCAAAAGGACTGAGAAACAAGTCTTTTCCATTCCACAGACAGTTAGCCTTTATTTTTGGAAAAGATAGAGCCAATGGACTTGGTGCAGAAGGTCCAACTAACATGTTTAAAGCAGTAGAGCGAGAAATGGACAACAATAAGTTTTGGAGAGAAATGGATAGTTTTTATGTGCCTGATCCACCAATAATTGGAGGGGAAGAAGTGGATGGACCTACCTCAATGAGTGAAGCGGCAACAAATATACAATCTAGTGCACATACATCAAATAGGTCTATGAATGGTCTTGAGAATGTTATGAGTAGTCATCTTTCAAGCACTAATGATAACATTCAAGAAATTTCTACAAGAGAAGCACGTCGAAACTCATTAGTTAGTGAAATTAGAAAGATTATCACTAAAGACCAATCTCATATTGATTATTTCTTTAATCTTCCACATGTTGAAAGATATGAAATCATAATGGAGGTTTTGCAAAAAGACGTTCATTCTTAA

Coding sequence (CDS)

AGTCATCGAAATGCAAAAGGACTGAGAAACAAGTCTTTTCCATTCCACAGACAGTTAGCCTTTATTTTTGGAAAAGATAGAGCCAATGGACTTGGTGCAGAAGGTCCAACTAACATGTTTAAAGCAGTAGAGCGAGAAATGGACAACAATAAGTTTTGGAGAGAAATGGATAGTTTTTATGTGCCTGATCCACCAATAATTGGAGGGGAAGAAGTGGATGGACCTACCTCAATGAGTGAAGCGGCAACAAATATACAATCTAGTGCACATACATCAAATAGGTCTATGAATGGTCTTGAGAATGTTATGAGTAGTCATCTTTCAAGCACTAATGATAACATTCAAGAAATTTCTACAAGAGAAGCACGTCGAAACTCATTAGTTAGTGAAATTAGAAAGATTATCACTAAAGACCAATCTCATATTGATTATTTCTTTAATCTTCCACATGTTGAAAGATATGAAATCATAATGGAGGTTTTGCAAAAAGACGTTCATTCTTAA

Protein sequence

SHRNAKGLRNKSFPFHRQLAFIFGKDRANGLGAEGPTNMFKAVEREMDNNKFWREMDSFYVPDPPIIGGEEVDGPTSMSEAATNIQSSAHTSNRSMNGLENVMSSHLSSTNDNIQEISTREARRNSLVSEIRKIITKDQSHIDYFFNLPHVERYEIIMEVLQKDVHS
Homology
BLAST of Bhi06G001058 vs. ExPASy TrEMBL
Match: A0A5A7TE82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002380 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 53/84 (63.10%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 47  MDNNKFWREMDSFYVPDPPIIGGEEVDGPTSMSEAATNIQSSAHTSNRS----------- 106
           M+NN FW EMD FYV  PPI+G EEVDG  SMSE  TN QS AHTSNRS           
Sbjct: 1   MNNNGFWIEMDGFYVRKPPIVGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPL 60

Query: 107 ---MNGLENVMSSHLSSTNDNIQE 117
              +NGLENVMS HLSS NDNIQE
Sbjct: 61  VAAVNGLENVMSKHLSSANDNIQE 84

BLAST of Bhi06G001058 vs. ExPASy TrEMBL
Match: A0A2N9EVH8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10688 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-07
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = 0

Query: 2   HRNAKGLRNKSFPFHRQLAFIFGKDRANGLGAEGPTNMFKAVERE--MDNNKFWREMDSF 61
           H +A  LRNK FP +  LA +FGKDRA G  AEGP++M + V+RE   +N   +   DS 
Sbjct: 23  HPDAASLRNKPFPHYDDLAHVFGKDRATGFSAEGPSDMVQTVDREEAEENEDLYDTDDSL 82

Query: 62  YVPDPPIIGGEEVDGPT----SMSEAATNIQSSAHTSNRSMNGLENVMSSHLSSTNDNIQ 121
                P + G   D P+    SM + A   +  A  ++R M   E ++ +    T++ I 
Sbjct: 83  ASTQGPPVAGSS-DNPSGATKSMKKLAETFKHEADGADRRMKVHEELIFAGGGLTDEEIV 142

Query: 122 EISTREARRNSLVSEIRKIITKDQSHIDYFFNLPHVERYEIIMEVLQK 164
           ++                IIT D +  DYFF L    +   +  +LQK
Sbjct: 143 KVG--------------GIITADCNKTDYFFTLGGHFKKLYVYSLLQK 175

BLAST of Bhi06G001058 vs. ExPASy TrEMBL
Match: A0A5C7HLQ5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015538 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-07
Identity = 58/195 (29.74%), Postives = 86/195 (44.10%), Query Frame = 0

Query: 1   SHRNAKGLRNKSFPFHRQLAFIFGKDRANGLGAEGPTNMFKAVEREMDNNKFWREMDSFY 60
           SH  AKGLRNK FP++ +L  +FGKDRANG G  G    F     E+ N       D  +
Sbjct: 64  SHPTAKGLRNKPFPYYEELRTVFGKDRANGQGVMG----FSETVEEIGNE------DDQH 123

Query: 61  VPDPPIIGGEEVDGPTSMSEAATNI---QSSAHTSNRSMN----------------GLEN 120
             D P    +E++G  +MS  +TNI   QSS    N S N                 ++ 
Sbjct: 124 NDDDPFYPSDELNGNVNMS--STNIPLTQSSKKGKNISRNEDPIVDFLKDSVKKFGNMQT 183

Query: 121 VMSSHLSSTNDNIQEISTREARRNSLVSEIRKI--------------ITKDQSHIDYFFN 163
             S  +    D  Q  +    RR ++  E++KI              +  DQ++IDYFF 
Sbjct: 184 ATSDSIRRLADCFQFEADGATRRMNVFDELKKIDGMTNAQRVKIGQLLVYDQANIDYFFT 243

BLAST of Bhi06G001058 vs. ExPASy TrEMBL
Match: A0A161XV48 (Myb_DNA-bind_3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 58/192 (30.21%), Postives = 89/192 (46.35%), Query Frame = 0

Query: 1   SHRNAKGLRNKSFPFHRQLAFIFGKDRANGLGAEGPTNMFKAVEREMDNNKFWREMDSFY 60
           SH NAKGLRNKSFP++ +L+ +FGKDRANG   E P +  + +  E +N     E     
Sbjct: 123 SHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEENTPQQSEHQKEN 182

Query: 61  VPDPPIIGGEEVDGPTSMSEAATNIQSSAHTSNRSMN-------GLENVMSSHLSSTNDN 120
             D       EV     +  A TN +++      S+        GL+ + S+ + + N+N
Sbjct: 183 TED-------EVSPRIDVQSADTNSRANKRLKADSLEIVKELTFGLQKI-SNVMETGNEN 242

Query: 121 IQEIS------TREARRNSLV-SEIRKI--------------ITKDQSHIDYFFNLPHVE 165
           I +++      +  A++ SLV SE+ K+              I  D    DYFF+LP   
Sbjct: 243 IAKLTSCFQHESDGAKKRSLVNSELMKVAGLTAEEIIKAGRKIALDPLETDYFFSLPEDF 302

BLAST of Bhi06G001058 vs. ExPASy TrEMBL
Match: A0A7J6E1G7 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_020165 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.5e-07
Identity = 55/192 (28.65%), Postives = 94/192 (48.96%), Query Frame = 0

Query: 1   SHRNAKGLRNKSFPFHRQLAFIFGKDRANGLGAEGPTNMFKAVEREMDNNKFWREMDSFY 60
           SH  AKGL +K FP++ +LA ++GKDRA G GA G +     +  E++N   W   D F 
Sbjct: 3   SHPTAKGLLHKPFPYYDELAIVYGKDRATGDGAMGFSETLDEIAEEINNG--WN--DDFD 62

Query: 61  VPDPPIIGGEEVDGPTSMSEAATNIQSSAHTSNRSMNG--LENVMSSHL-------SSTN 120
             DP     +E++   SM+ +  + Q++     +S NG  L  ++S  +       +S +
Sbjct: 63  PFDPL----DEMNANASMNSSIPSSQTTRKAKRKSNNGDPLVELLSKSVQEFSTMQASAS 122

Query: 121 DNIQEI-------STREARRNSLVSEIRKI--------------ITKDQSHIDYFFNLPH 163
           D+I+++       +   ARR  L  EI+K+              +  +Q HIDYFF L  
Sbjct: 123 DSIRKLADCFQHEADGAARRMKLYEEIKKVDGLTNSQRLKIGKLLVSNQPHIDYFFTLEE 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TE821.1e-1563.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2N9EVH82.5e-0731.55Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10688 PE=4 SV=1[more]
A0A5C7HLQ54.2e-0729.74Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015538 PE=4 SV=1[more]
A0A161XV485.5e-0730.21Myb_DNA-bind_3 domain-containing protein OS=Daucus carota subsp. sativus OX=7920... [more]
A0A7J6E1G75.5e-0728.65Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_020165 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001058Bhi06M001058mRNA