Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGTGGCAGACCACGCAAGCAACCAATAGGGACTCCAGATGTTACCCCCGAAAGAGACCAAGGCGAATCAAGCCATCCACAGCCAGAGGCTAGAGCTGACGAGCAAATGATGGGAAGATTTGCTCGGTGCCTAGCCGAAAACCTAGGAAGGGTTACAGTAGACCCCGAAAAGCGGTTTAGTATTGAAAGGTTGAAAGACTTAGAAGCCTCAACTTTTGAAGGAACCACGAACCCAGCTGATGCTGAAGCTTGGTTCGTGATGGTAGAGAAATGCTTCAGGGTAATGTAA
mRNA sequence
ATGGCACGTGGCAGACCACGCAAGCAACCAATAGGGACTCCAGATGTTACCCCCGAAAGAGACCAAGGCGAATCAAGCCATCCACAGCCAGAGGCTAGAGCTGACGAGCAAATGATGGGAAGATTTGCTCGGTGCCTAGCCGAAAACCTAGGAAGGGTTACAGTAGACCCCGAAAAGCGGTTTAGTATTGAAAGGTTGAAAGACTTAGAAGCCTCAACTTTTGAAGGAACCACGAACCCAGCTGATGCTGAAGCTTGGTTCGTGATGGTAGAGAAATGCTTCAGGGTAATGTAA
Coding sequence (CDS)
ATGGCACGTGGCAGACCACGCAAGCAACCAATAGGGACTCCAGATGTTACCCCCGAAAGAGACCAAGGCGAATCAAGCCATCCACAGCCAGAGGCTAGAGCTGACGAGCAAATGATGGGAAGATTTGCTCGGTGCCTAGCCGAAAACCTAGGAAGGGTTACAGTAGACCCCGAAAAGCGGTTTAGTATTGAAAGGTTGAAAGACTTAGAAGCCTCAACTTTTGAAGGAACCACGAACCCAGCTGATGCTGAAGCTTGGTTCGTGATGGTAGAGAAATGCTTCAGGGTAATGTAA
Protein sequence
MARGRPRKQPIGTPDVTPERDQGESSHPQPEARADEQMMGRFARCLAENLGRVTVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRVM
Homology
BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match:
A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 0
Query: 1 MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
M RGRPRK P T + E G ESS P E +EQ++ R A+ L +
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79
Query: 61 TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
DPEK++ IERLK L A+TF GTTNPADAEAW ++EKCFRV
Sbjct: 80 QSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRV 122
BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match:
A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)
HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0
Query: 1 MARGRPRKQPIGTPD-------VTPERDQGESSHPQPEARADEQMMGRFARCLAENLGRV 60
M RGRPRK+P+ + E ESS P E +EQ++ R A+ +
Sbjct: 1 MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKST 60
Query: 61 TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRVM 98
D EK+F IERLK L ++TF TTNPA+AEAW ++EKCFRVM
Sbjct: 61 QSDLEKKFEIERLKALGSTTFARTTNPANAEAWLTLIEKCFRVM 104
BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match:
A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0
Query: 1 MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
M RG+PRK P + E G ESS P+ E +EQ++ R A+ L +
Sbjct: 1 MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
Query: 61 TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
DPEK++ ERLK L A+TF GTTNP D EAW ++EKCFRV
Sbjct: 61 QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103
BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match:
A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0
Query: 1 MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
M RG+PRK P + E G ESS P+ E +EQ++ R A+ L +
Sbjct: 1 MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60
Query: 61 TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
DPEK++ ERLK L A+TF GTTNP D EAW ++EKCFRV
Sbjct: 61 QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103
BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match:
A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 7.3e-12
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 0
Query: 1 MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
M +GRPRK P + E G ESS P E +EQ++ R A+ L +
Sbjct: 1 MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLA 60
Query: 61 TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
D EK++ IERLK L A+TF GTTNP DAE W ++EKCF+V
Sbjct: 61 QSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKV 103
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DES5 | 1.4e-15 | 49.51 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5A7ULX5 | 2.7e-14 | 44.23 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5D3BB91 | 1.0e-13 | 44.66 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... | [more] |
A0A5A7T1M0 | 1.0e-13 | 44.66 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... | [more] |
A0A5A7SJ99 | 7.3e-12 | 43.69 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |