Bhi05G001703 (gene) Wax gourd (B227) v1

Overview
NameBhi05G001703
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr5: 60904862 .. 60905155 (-)
RNA-Seq ExpressionBhi05G001703
SyntenyBhi05G001703
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGTGGCAGACCACGCAAGCAACCAATAGGGACTCCAGATGTTACCCCCGAAAGAGACCAAGGCGAATCAAGCCATCCACAGCCAGAGGCTAGAGCTGACGAGCAAATGATGGGAAGATTTGCTCGGTGCCTAGCCGAAAACCTAGGAAGGGTTACAGTAGACCCCGAAAAGCGGTTTAGTATTGAAAGGTTGAAAGACTTAGAAGCCTCAACTTTTGAAGGAACCACGAACCCAGCTGATGCTGAAGCTTGGTTCGTGATGGTAGAGAAATGCTTCAGGGTAATGTAA

mRNA sequence

ATGGCACGTGGCAGACCACGCAAGCAACCAATAGGGACTCCAGATGTTACCCCCGAAAGAGACCAAGGCGAATCAAGCCATCCACAGCCAGAGGCTAGAGCTGACGAGCAAATGATGGGAAGATTTGCTCGGTGCCTAGCCGAAAACCTAGGAAGGGTTACAGTAGACCCCGAAAAGCGGTTTAGTATTGAAAGGTTGAAAGACTTAGAAGCCTCAACTTTTGAAGGAACCACGAACCCAGCTGATGCTGAAGCTTGGTTCGTGATGGTAGAGAAATGCTTCAGGGTAATGTAA

Coding sequence (CDS)

ATGGCACGTGGCAGACCACGCAAGCAACCAATAGGGACTCCAGATGTTACCCCCGAAAGAGACCAAGGCGAATCAAGCCATCCACAGCCAGAGGCTAGAGCTGACGAGCAAATGATGGGAAGATTTGCTCGGTGCCTAGCCGAAAACCTAGGAAGGGTTACAGTAGACCCCGAAAAGCGGTTTAGTATTGAAAGGTTGAAAGACTTAGAAGCCTCAACTTTTGAAGGAACCACGAACCCAGCTGATGCTGAAGCTTGGTTCGTGATGGTAGAGAAATGCTTCAGGGTAATGTAA

Protein sequence

MARGRPRKQPIGTPDVTPERDQGESSHPQPEARADEQMMGRFARCLAENLGRVTVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRVM
Homology
BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 0

Query: 1   MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
           M RGRPRK P   T +   E   G      ESS P  E   +EQ++ R A+ L   +   
Sbjct: 20  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79

Query: 61  TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
             DPEK++ IERLK L A+TF GTTNPADAEAW  ++EKCFRV
Sbjct: 80  QSDPEKKYGIERLKALGATTFVGTTNPADAEAWLTLIEKCFRV 122

BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match: A0A5A7ULX5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006310 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 1   MARGRPRKQPIGTPD-------VTPERDQGESSHPQPEARADEQMMGRFARCLAENLGRV 60
           M RGRPRK+P+           +  E    ESS P  E   +EQ++ R A+     +   
Sbjct: 1   MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKST 60

Query: 61  TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRVM 98
             D EK+F IERLK L ++TF  TTNPA+AEAW  ++EKCFRVM
Sbjct: 61  QSDLEKKFEIERLKALGSTTFARTTNPANAEAWLTLIEKCFRVM 104

BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match: A0A5D3BB91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001760 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0

Query: 1   MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
           M RG+PRK P     +   E   G      ESS P+ E   +EQ++ R A+ L   +   
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
             DPEK++  ERLK L A+TF GTTNP D EAW  ++EKCFRV
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103

BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match: A0A5A7T1M0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001070 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0

Query: 1   MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
           M RG+PRK P     +   E   G      ESS P+ E   +EQ++ R A+ L   +   
Sbjct: 1   MPRGKPRKHPDAEASNAAKEAAMGSGESDAESSRPRVEENVEEQLLDRLAQRLVSGIRSA 60

Query: 61  TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
             DPEK++  ERLK L A+TF GTTNP D EAW  ++EKCFRV
Sbjct: 61  QSDPEKKYGFERLKALGATTFAGTTNPTDVEAWLTLIEKCFRV 103

BLAST of Bhi05G001703 vs. ExPASy TrEMBL
Match: A0A5A7SJ99 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.3e-12
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 0

Query: 1   MARGRPRKQP-IGTPDVTPERDQG------ESSHPQPEARADEQMMGRFARCLAENLGRV 60
           M +GRPRK P     +   E   G      ESS P  E   +EQ++ R A+ L   +   
Sbjct: 1   MPQGRPRKHPDAEASNAAREAAMGSGESDAESSRPHVEGNVEEQLLDRLAQRLILGIRLA 60

Query: 61  TVDPEKRFSIERLKDLEASTFEGTTNPADAEAWFVMVEKCFRV 97
             D EK++ IERLK L A+TF GTTNP DAE W  ++EKCF+V
Sbjct: 61  QSDSEKKYGIERLKALGATTFVGTTNPVDAEEWLTLIEKCFKV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DES51.4e-1549.51DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7ULX52.7e-1444.23DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BB911.0e-1344.66Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5A7T1M01.0e-1344.66Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20... [more]
A0A5A7SJ997.3e-1243.69DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi05M001703Bhi05M001703mRNA