Bhi05G001423 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001423
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotransposable element Tf2
Location	chr5: 54078755 .. 54078952 (+)
RNA-Seq Expression	Bhi05G001423
Synteny	Bhi05G001423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTCTTGCTGGAGCAGGATCACACACTGATTTTACTTCAGTTCTCAACACAGTCGTCAAGCAGTTATCAGACCATGACGAAACTCAAGAAGATGCAAATTCTTCTGCATCTGTAAATAATGAAGTCAAAGATGACGAAGATGATTATGACCCTTTCGCCGATTACGACATCAATGACCCGTTTTTAGACTAA

mRNA sequence

ATGAGTTCTCTTGCTGGAGCAGGATCACACACTGATTTTACTTCAGTTCTCAACACAGTCGTCAAGCAGTTATCAGACCATGACGAAACTCAAGAAGATGCAAATTCTTCTGCATCTGTAAATAATGAAGTCAAAGATGACGAAGATGATTATGACCCTTTCGCCGATTACGACATCAATGACCCGTTTTTAGACTAA

Coding sequence (CDS)

ATGAGTTCTCTTGCTGGAGCAGGATCACACACTGATTTTACTTCAGTTCTCAACACAGTCGTCAAGCAGTTATCAGACCATGACGAAACTCAAGAAGATGCAAATTCTTCTGCATCTGTAAATAATGAAGTCAAAGATGACGAAGATGATTATGACCCTTTCGCCGATTACGACATCAATGACCCGTTTTTAGACTAA

Protein sequence

MSSLAGAGSHTDFTSVLNTVVKQLSDHDETQEDANSSASVNNEVKDDEDDYDPFADYDINDPFLD

Homology

[Close]

BLAST of Bhi05G001423 vs. ExPASy TrEMBL
Match: A0A5A7UWR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00160 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MSSLAGAGSHTDFTSVLNTVVKQLSDHDETQEDANSSASVNNEV-KDDEDDYDPFADYDI 60
          MSSLAG GS  +F  V+NTV  Q+SD D+ Q +ANS  S+NN + +DDEDD++ + DYDI
Sbjct: 17 MSSLAGVGSQEEFNFVVNTVAVQISDPDDLQAEANSPISINNVIEEDDEDDFNSYVDYDI 76

Query: 61 NDPFLD 66
          NDPFLD
Sbjct: 77 NDPFLD 82

[Close]

BLAST of Bhi05G001423 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1   MSSLAGAGSHTDFTSVLNTVVKQLSDHDETQEDANSSASVNNEVKDDEDDYDPFADYDIN 60
           MS+LAGA +  +F SV+N VV  LSD ++   +  S ASVNN    D+ DYDP+   DIN
Sbjct: 354 MSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNA---DDFDYDPYEGLDIN 413

Query: 61  DPFLD 66
           DPFLD
Sbjct: 414 DPFLD 415

[Close]

BLAST of Bhi05G001423 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.9e-04
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1   MSSLAGAGSHTDFTSVLNTVVKQLSDHDETQEDANSSASVNNEVKDDEDDYDPFADYDIN 60
           MS+LAGA +  +F SV+N VV  LSD ++   +  S ASVNN    D+ DYDP+   DIN
Sbjct: 354 MSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDFDYDPYEGLDIN 413

Query: 61  DPFLD 66
           DPFLD
Sbjct: 414 DPFLD 415

[Close]

BLAST of Bhi05G001423 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1   MSSLAGAGSHTDFTSVLNTVVKQLSDHDETQEDANSSASVNNEVKDDEDDYDPFADYDIN 60
           MS+LAGA +  +F SV+N VV  LSD ++   +  S ASVNN    D+ DYDP+   DIN
Sbjct: 354 MSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDLDYDPYEGLDIN 413

Query: 61  DPFLD 66
           DPFLD
Sbjct: 414 DPFLD 415

[Close]

BLAST of Bhi05G001423 vs. ExPASy TrEMBL
Match: A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1   MSSLAGAGSHTDFTSVLNTVVKQLS-DHDETQEDANSSASVNNEVKDDEDDYDPFADYDI 60
           MS+LAGA +  +F SV+N VV  LS D+D+  EDA S ASVN+    D+ DYDP+   DI
Sbjct: 354 MSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDA-SPASVNDV---DDLDYDPYVGLDI 413

Query: 61  NDPFLD 66
           NDPFLD
Sbjct: 414 NDPFLD 415

The following BLAST results are available for this feature:

BLAST of Bhi05G001423 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001423 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWR6	1.7e-09	59.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6D1	3.8e-04	52.31	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVN1	4.9e-04	52.31	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VIK9	6.4e-04	52.31	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SR64	6.4e-04	56.06	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001423	Bhi05M001423	mRNA