Bhi05G001394 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001394
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Expansin-like A2
Location	chr5: 53315772 .. 53315993 (-)
RNA-Seq Expression	Bhi05G001394
Synteny	Bhi05G001394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGAAGTTATGGAGCTGTTTGGAAAACAGACCATGTACCTGAAGGTACATTACAATTGAGAATGGTGGTGACTTCTAGATACAATGGAAAATGGGTTTGGGCAAAGTCTATACTTCCTGTCAATTGGAGAGCTGGAGCGATTTACGATACTGGAGTTCAAATCAAAGATATTGTCAAAAAAGAGTTGCCCTCTTGGCAATGTGGTGGTGCACAATGA

mRNA sequence

ATGAAGAGAAGTTATGGAGCTGTTTGGAAAACAGACCATGTACCTGAAGGTACATTACAATTGAGAATGGTGGTGACTTCTAGATACAATGGAAAATGGGTTTGGGCAAAGTCTATACTTCCTGTCAATTGGAGAGCTGGAGCGATTTACGATACTGGAGTTCAAATCAAAGATATTGTCAAAAAAGAGTTGCCCTCTTGGCAATGTGGTGGTGCACAATGA

Coding sequence (CDS)

ATGAAGAGAAGTTATGGAGCTGTTTGGAAAACAGACCATGTACCTGAAGGTACATTACAATTGAGAATGGTGGTGACTTCTAGATACAATGGAAAATGGGTTTGGGCAAAGTCTATACTTCCTGTCAATTGGAGAGCTGGAGCGATTTACGATACTGGAGTTCAAATCAAAGATATTGTCAAAAAAGAGTTGCCCTCTTGGCAATGTGGTGGTGCACAATGA

Protein sequence

MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIVKKELPSWQCGGAQ

Homology

[Close]

BLAST of Bhi05G001394 vs. TAIR 10
Match: AT3G45970.1 (expansin-like A1 )

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-18
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G +Q R VVT  Y+GK +W++S+LP NW AG IYD GVQI DI 
Sbjct: 193 MTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIA 252

Query: 61  KK 63
           ++
Sbjct: 253 QE 254

[Close]

BLAST of Bhi05G001394 vs. TAIR 10
Match: AT4G38400.1 (expansin-like A2 )

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-18
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G LQ R VVT+ Y+GK VW++ +LP NW AG  YD GVQI DI 
Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIA 252

Query: 61  KK 63
           ++
Sbjct: 253 QE 254

[Close]

BLAST of Bhi05G001394 vs. TAIR 10
Match: AT3G45960.1 (expansin-like A3 )

HSP 1 Score: 86.7 bits (213), Expect = 8.7e-18
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G LQ +  VT  Y+GK VW+K +LP NW +G IYD GVQI DI 
Sbjct: 144 MSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIA 203

Query: 61  KK 63
           ++
Sbjct: 204 QE 205

[Close]

BLAST of Bhi05G001394 vs. TAIR 10
Match: AT3G45960.2 (expansin-like A3 )

HSP 1 Score: 86.7 bits (213), Expect = 8.7e-18
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G LQ +  VT  Y+GK VW+K +LP NW +G IYD GVQI DI 
Sbjct: 192 MSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIA 251

Query: 61  KK 63
           ++
Sbjct: 252 QE 253

[Close]

BLAST of Bhi05G001394 vs. ExPASy Swiss-Prot
Match: Q9LZT4 (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G +Q R VVT  Y+GK +W++S+LP NW AG IYD GVQI DI 
Sbjct: 193 MTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIA 252

Query: 61  KK 63
           ++
Sbjct: 253 QE 254

[Close]

BLAST of Bhi05G001394 vs. ExPASy Swiss-Prot
Match: Q9SVE5 (Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.3e-17
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G LQ R VVT+ Y+GK VW++ +LP NW AG  YD GVQI DI 
Sbjct: 193 MTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIA 252

Query: 61  KK 63
           ++
Sbjct: 253 QE 254

[Close]

BLAST of Bhi05G001394 vs. ExPASy Swiss-Prot
Match: Q9LZT5 (Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-16
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           M RS+GAVW TD VP G LQ +  VT  Y+GK VW+K +LP NW +G IYD GVQI DI 
Sbjct: 192 MSRSHGAVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIA 251

Query: 61  KK 63
           ++
Sbjct: 252 QE 253

[Close]

BLAST of Bhi05G001394 vs. ExPASy Swiss-Prot
Match: Q8H274 (Expansin-like A3 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWA-KSILPVNWRAGAIYDTGVQIKDI 60
           M R YG VW  D  P G LQ R VVT  Y+GKWVWA + +LP NW+ G +YDTG +I D+
Sbjct: 203 MTRVYGPVWSIDRAPNGPLQFRAVVTGGYDGKWVWADREVLPANWQPGQVYDTGARIADV 262

Query: 61  VKK 63
            ++
Sbjct: 263 ARE 265

[Close]

BLAST of Bhi05G001394 vs. ExPASy Swiss-Prot
Match: Q10S70 (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.7e-15
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWA-KSILPVNWRAGAIYDTGVQIKDI 60
           M R +G  W   + P G LQ+R+VVT  Y+GKWVWA + +LP  WRAG +YDTGVQI DI
Sbjct: 206 MTREHGPSWSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDI 265

Query: 61  VKK 63
            ++
Sbjct: 266 AQE 268

[Close]

BLAST of Bhi05G001394 vs. ExPASy TrEMBL
Match: A0A1S3BHW6 (Expansin A7-like protein OS=Cucumis melo OX=3656 GN=LOC107990293 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.5e-29
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           MKRSYGAVW+TD+VPEG LQLRMVVTS Y+GKWVWAKS+LP NWRAGAIYDTGVQIKDI 
Sbjct: 189 MKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQIKDIA 248

Query: 61  KKELPSWQCG 71
           K+  P WQCG
Sbjct: 249 KESCPPWQCG 258

[Close]

BLAST of Bhi05G001394 vs. ExPASy TrEMBL
Match: A0A5D3D657 (Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80547G00010 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.2e-28
Identity = 57/70 (81.43%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           MKRSYGAVW+TD+VPEG LQLRMVVTS Y+GKWVWAKS+LP NWRAGAIYDTGVQI DI 
Sbjct: 153 MKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQINDIA 212

Query: 61  KKELPSWQCG 71
           K+  P WQCG
Sbjct: 213 KESCPPWQCG 222

[Close]

BLAST of Bhi05G001394 vs. ExPASy TrEMBL
Match: A0A6J1HZC5 (expansin-like A2 OS=Cucurbita maxima OX=3661 GN=LOC111468285 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-26
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           MKRSYGAVW+TD+VPEG LQLRMVVTS Y+GKWVWAKS+LP NW  GAI++TGVQI DI 
Sbjct: 188 MKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIFNTGVQINDIA 247

Query: 61  KKELPSWQCGGAQ 74
           K+  P WQCG  Q
Sbjct: 248 KESCPPWQCGDGQ 260

[Close]

BLAST of Bhi05G001394 vs. ExPASy TrEMBL
Match: A0A6J1GKS8 (expansin-like A2 OS=Cucurbita moschata OX=3662 GN=LOC111455268 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-26
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           MKRSYGAVW+TD+VPEG LQLRMVVTS Y+GKWVWAKS+LP NW  GAI++TGVQI DI 
Sbjct: 188 MKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIFNTGVQINDIA 247

Query: 61  KKELPSWQCGGAQ 74
           K+  P WQCG  Q
Sbjct: 248 KESCPPWQCGDGQ 260

[Close]

BLAST of Bhi05G001394 vs. ExPASy TrEMBL
Match: A0A6J1C4W7 (expansin-like A2 OS=Momordica charantia OX=3673 GN=LOC111007952 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.1e-26
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MKRSYGAVWKTDHVPEGTLQLRMVVTSRYNGKWVWAKSILPVNWRAGAIYDTGVQIKDIV 60
           MKR+YGAVW T+++PEG LQLRMVVTS Y+GKWVWAKS+LP +W++GAIYDTGVQI DI 
Sbjct: 188 MKRNYGAVWDTNNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGAIYDTGVQITDIA 247

Query: 61  KKELPSWQCGGAQ 74
           K+  P WQCG  Q
Sbjct: 248 KESCPPWQCGDGQ 260

The following BLAST results are available for this feature:

BLAST of Bhi05G001394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45970.1	2.3e-18	59.68	expansin-like A1	[more]
AT4G38400.1	6.6e-18	59.68	expansin-like A2	[more]
AT3G45960.1	8.7e-18	58.06	expansin-like A3	[more]
AT3G45960.2	8.7e-18	58.06	expansin-like A3	[more]

BLAST of Bhi05G001394 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZT4	3.2e-17	59.68	Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1	[more]
Q9SVE5	9.3e-17	59.68	Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1	[more]
Q9LZT5	1.2e-16	58.06	Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1	[more]
Q8H274	3.0e-15	52.38	Expansin-like A3 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA3 PE=2 SV=1	[more]
Q10S70	8.7e-15	53.97	Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1	[more]

BLAST of Bhi05G001394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHW6	8.5e-29	82.86	Expansin A7-like protein OS=Cucumis melo OX=3656 GN=LOC107990293 PE=2 SV=1	[more]
A0A5D3D657	3.2e-28	81.43	Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80547G0...	[more]
A0A6J1HZC5	2.3e-26	73.97	expansin-like A2 OS=Cucurbita maxima OX=3661 GN=LOC111468285 PE=3 SV=1	[more]
A0A6J1GKS8	2.3e-26	73.97	expansin-like A2 OS=Cucurbita moschata OX=3662 GN=LOC111455268 PE=3 SV=1	[more]
A0A6J1C4W7	5.1e-26	71.23	expansin-like A2 OS=Momordica charantia OX=3673 GN=LOC111007952 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	2.60.40.760		coord: 1..57 e-value: 1.5E-17 score: 65.2
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 1..52
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Expansin_C	coord: 1..41 e-value: 1.5E-5 score: 24.9
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 1..52 score: 12.863191
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 1..69
None	No IPR available	PANTHER	PTHR31692	EXPANSIN-B3	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001394	Bhi05M001394	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019953	sexual reproduction
cellular_component	GO:0005576	extracellular region