Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAATTCCACTCCAACCAATCTCCTTCAAAACACAAACCCACAACAACTTTTTTTTTCCTTGAAAAGTTTCAATTTTTCCACAAAAATTGAAACACCCAGTTGACCCAATTGGCCAAAATCATCAAATCTTGATCCAAAATTTCAATCCAATCCTTCAAAATTTGCAAATTTCCACAATGAAGTTAGTGATCTCAGCTTCTTTACTATCTGCAATGGTATTTTACTCTTCTCTCCTTCCTTTTCTCCACTCTTTGAACCTTTATATCTCTACAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAATTCCGGTCTTATCGGCAACTCCAGCGACGAACAGAGTGGCAGAAATGAAGCTCTAGGGGCTGCAATGGCTGATGGGAACAGAAAAATTGAGAGCAAAGTTGAAATTGAAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAAATGAAGAATTGATTACAAAGGATGAAGATGAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTGACGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGTTTGTTTTGTAACTGAGAATTTATAAATGATTAAAAATTCTGACTTTGTAATTTTTTACTCTGTTCTTCACTTTCTCTTCAGTTGGATATAGAAATAATTTTTTTACCTTTCATTTTGGCATAATTAGGATAGAGAATTATGAAATTAAAATAAATAAAAAGCAC
mRNA sequence
CCCAATTCCACTCCAACCAATCTCCTTCAAAACACAAACCCACAACAACTTTTTTTTTCCTTGAAAAGTTTCAATTTTTCCACAAAAATTGAAACACCCAGTTGACCCAATTGGCCAAAATCATCAAATCTTGATCCAAAATTTCAATCCAATCCTTCAAAATTTGCAAATTTCCACAATGAAGTTAGTGATCTCAGCTTCTTTACTATCTGCAATGGTATTTTACTCTTCTCTCCTTCCTTTTCTCCACTCTTTGAACCTTTATATCTCTACAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAATTCCGGTCTTATCGGCAACTCCAGCGACGAACAGAGTGGCAGAAATGAAGCTCTAGGGGCTGCAATGGCTGATGGGAACAGAAAAATTGAGAGCAAAGTTGAAATTGAAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAAATGAAGAATTGATTACAAAGGATGAAGATGAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTGACGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGTTTGTTTTGTAACTGAGAATTTATAAATGATTAAAAATTCTGACTTTGTAATTTTTTACTCTGTTCTTCACTTTCTCTTCAGTTGGATATAGAAATAATTTTTTTACCTTTCATTTTGGCATAATTAGGATAGAGAATTATGAAATTAAAATAAATAAAAAGCAC
Coding sequence (CDS)
ATGAAGTTAGTGATCTCAGCTTCTTTACTATCTGCAATGGTATTTTACTCTTCTCTCCTTCCTTTTCTCCACTCTTTGAACCTTTATATCTCTACAACAATCCACAAGAACTACATGTTCTTGCTCTGCAATGGCCTCCTTGTCTTCATCGTTCGAAATTCCGGTCTTATCGGCAACTCCAGCGACGAACAGAGTGGCAGAAATGAAGCTCTAGGGGCTGCAATGGCTGATGGGAACAGAAAAATTGAGAGCAAAGTTGAAATTGAAGAAGAAAGGGAAAATGGGTTGATTGCAAAAGAAGAAGAAAATGAAGAATTGATTACAAAGGATGAAGATGAAGAAGAAAGATTCAATTTTTATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAATTGACGAAGAATTGAATAAGAAATGTGAAGAATTTATTAGAAAAATGAAGGAAGGAATTAAATTTGAATCACAGCAAGTGTTTGTTTTGTAA
Protein sequence
MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNSSDEQSGRNEALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELITKDEDEEERFNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL
Homology
BLAST of Bhi05G001294 vs. TAIR 10
Match:
AT2G04495.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 42.4 bits (98), Expect = 4.1e-04
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 0
Query: 2 KLVISASLLSAMVFYSSLLPF----LHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLI 61
K++ AS+ S ++ YSSL+ LH L++Y S + K YMFLLCNG++ FI+
Sbjct: 18 KIIALASIFSFILSYSSLISSLQQRLHLLSMY-SNLVDKKYMFLLCNGIVGFIL--GSFH 77
Query: 62 GNSSDEQSGR-----NEALGAAMAD-GNRKIESKVEIEEERENGLIAKEEENEE-----L 121
GNS G+ + + D K++ V + EE+ ++KEEE EE +
Sbjct: 78 GNSESLSQGKAINIIEQTKEVGIKDLKETKLKKVVALLEEKS---VSKEEEEEEEGGRVV 137
Query: 122 ITKDEDEEERFNFYEEEEE--------------EEEEEID------EELNKKCEEFIRKM 158
+ + +EEE E +EE ++EEI+ E+LNKKCE+FIRKM
Sbjct: 138 LFRGIEEEEVSLVVEVDEEILVQDLAIIRVDDHHDDEEINDSLLSVEDLNKKCEDFIRKM 197
BLAST of Bhi05G001294 vs. TAIR 10
Match:
AT2G04515.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04495.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 42.0 bits (97), Expect = 5.4e-04
Identity = 57/184 (30.98%), Postives = 93/184 (50.54%), Query Frame = 0
Query: 2 KLVISASLLSAMVFYSSLLPF----LHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLI 61
K++ AS+ S ++ YSSL+ LH L +Y S + K YMFLLCNG++ FI+
Sbjct: 18 KIIAFASIFSFILSYSSLISSLQQRLHLLAMY-SNLVDKKYMFLLCNGIVGFIL--GSFH 77
Query: 62 GNSSDEQSGR-----NEALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELITKDED 121
GNS G+ + + D +KV E N ++KEEE +++++E+
Sbjct: 78 GNSDSLSHGKAINIVEQTKEVGIKDLKETKVNKVVALLEESN--VSKEEEGRVVLSREEE 137
Query: 122 EEERFNFYEEE-------------EEEEEEEID------EELNKKCEEFIRKMKEGIKFE 158
EE E+E + ++++ I+ E+LNKKCE+FIRKMK I++
Sbjct: 138 EEVALVVKEDEGILVQDLSITRLDDHDDDDAINDSLLSSEDLNKKCEDFIRKMKAEIRYG 196
BLAST of Bhi05G001294 vs. ExPASy TrEMBL
Match:
A0A0A0K349 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1)
HSP 1 Score: 224.6 bits (571), Expect = 3.0e-55
Identity = 136/161 (84.47%), Postives = 145/161 (90.06%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISASLLSAMVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLIGN+
Sbjct: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNT 60
Query: 61 SDEQSGRNEALGAA-MADGNRKIESKVEIEEERENGLIAKEEENEELITKDEDEEERFNF 120
SDE+S NEALGAA MADGNRKIESKVEIEEER NGL+ E++ E LIT +E EEERF
Sbjct: 61 SDERSSGNEALGAATMADGNRKIESKVEIEEERGNGLVVNEDKIENLITDNEVEEERFMS 120
Query: 121 YEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL 161
Y EEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+F+L
Sbjct: 121 Y---EEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 158
BLAST of Bhi05G001294 vs. ExPASy TrEMBL
Match:
A0A1S3CG16 (gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1)
HSP 1 Score: 206.8 bits (525), Expect = 6.6e-50
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 0
Query: 13 MVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNSSDEQSGRNEALG 72
MVFYSSLLPFLHSLNLYIS+TIHKNYMFLLCNGLLVFIVRNSGLIGN+ +EQS RNEALG
Sbjct: 1 MVFYSSLLPFLHSLNLYISSTIHKNYMFLLCNGLLVFIVRNSGLIGNTCNEQSSRNEALG 60
Query: 73 A-AMADGNRKIESK--VEIEEERENGLIAKEEENEELITKDEDEEERFNFY--------E 132
A MADGNRKIESK VE+EEER NGL+ EE+ E LIT +EDEEERF Y E
Sbjct: 61 AVTMADGNRKIESKVEVEVEEERRNGLVVNEEKFENLITDNEDEEERFISYEEEEEEEEE 120
Query: 133 EEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL 161
EEEEEEEEEIDEELNKKCEEFIRKMK GIKFESQQ+F+L
Sbjct: 121 EEEEEEEEEIDEELNKKCEEFIRKMKAGIKFESQQLFIL 159
BLAST of Bhi05G001294 vs. ExPASy TrEMBL
Match:
A0A6J1EJY9 (uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC111435260 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 3.1e-39
Identity = 113/164 (68.90%), Postives = 127/164 (77.44%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKL+ISASLLSAMVFYSSLLPFLHS NLYIS T HKNYMFLLCNGLLVFIVRNSGLI S
Sbjct: 1 MKLLISASLLSAMVFYSSLLPFLHSFNLYISATAHKNYMFLLCNGLLVFIVRNSGLISCS 60
Query: 61 SDEQSGRN----EALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELITKDEDEEER 120
D SG + EAL A+MADG+ KIESKVE EER NGLI K+EE+E I +D+D ++
Sbjct: 61 GDRHSGGDSRGAEALEASMADGSSKIESKVEDREERGNGLIQKDEESERSIVEDDDNDD- 120
Query: 121 FNFYEEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFVL 161
+++EEE EELNKKCEEFIRKMK GIK ESQQ+ VL
Sbjct: 121 ----DDDEEEVGALSKEELNKKCEEFIRKMKAGIKLESQQLLVL 159
BLAST of Bhi05G001294 vs. ExPASy TrEMBL
Match:
A0A6J1I0H9 (sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC111468328 PE=4 SV=1)
HSP 1 Score: 169.9 bits (429), Expect = 8.9e-39
Identity = 112/169 (66.27%), Postives = 129/169 (76.33%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MKLVISAS+LSAMVFYSSLLPFLHSLNLYIS TIHKNYMFLLCNGLLVFIVRNSGLI +S
Sbjct: 1 MKLVISASVLSAMVFYSSLLPFLHSLNLYISATIHKNYMFLLCNGLLVFIVRNSGLISSS 60
Query: 61 SDEQSGRN-----EALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELITKDEDEEE 120
EQ G + EALGAAM D IE KVE EERENG IA+EE+ E + +E++++
Sbjct: 61 GREQCGGHGSREAEALGAAMEDSTTIIERKVEDGEERENGFIAEEEQESERLVTEEEQQQ 120
Query: 121 RFNFYEEEEEEEEEEI----DEELNKKCEEFIRKMKEGIKFESQQVFVL 161
+EEE+ E EE+ +EEL+KK EEFIRKMK GIK ESQQV +L
Sbjct: 121 EHEEEQEEEKAEAEEVGALSNEELDKKFEEFIRKMKAGIKLESQQVLIL 169
BLAST of Bhi05G001294 vs. ExPASy TrEMBL
Match:
A0A6J1C4P4 (ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 109/159 (68.55%), Postives = 124/159 (77.99%), Query Frame = 0
Query: 1 MKLVISASLLSAMVFYSSLLPFLHSLNLYISTTIHKNYMFLLCNGLLVFIVRNSGLIGNS 60
MK++ISASLLSAMV YSSLLPFLHSLNLYIS TIHKNY+FLLCNGLLVFIVRNSGLIG S
Sbjct: 1 MKILISASLLSAMVLYSSLLPFLHSLNLYISATIHKNYIFLLCNGLLVFIVRNSGLIGGS 60
Query: 61 SDEQSGRNEALGAAMADGNRKIESKVEIEEERENGLIAKEEENEELITKDEDEEERFNFY 120
+EQ G K+ESKVE EERENGL+A++EE+E+LIT+DE+ EE
Sbjct: 61 GEEQG------------GGGKVESKVEDGEERENGLVAEQEESEKLITEDEEHEEE---- 120
Query: 121 EEEEEEEEEEIDEELNKKCEEFIRKMKEGIKFESQQVFV 160
EEEEEE+ +EELN+KCEEFIRKMK IKFE QQV V
Sbjct: 121 EEEEEEDGGLSNEELNQKCEEFIRKMKAEIKFELQQVLV 143
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT2G04495.1 | 4.1e-04 | 32.98 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
AT2G04515.1 | 5.4e-04 | 30.98 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K349 | 3.0e-55 | 84.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G032240 PE=4 SV=1 | [more] |
A0A1S3CG16 | 6.6e-50 | 79.87 | gem-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC103500515 PE=4 SV=1 | [more] |
A0A6J1EJY9 | 3.1e-39 | 68.90 | uncharacterized protein LOC111435260 OS=Cucurbita moschata OX=3662 GN=LOC1114352... | [more] |
A0A6J1I0H9 | 8.9e-39 | 66.27 | sodium/potassium/calcium exchanger 1-like OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A6J1C4P4 | 1.3e-37 | 68.55 | ATP-dependent RNA helicase MAK5 OS=Momordica charantia OX=3673 GN=LOC111007892 P... | [more] |