Bhi04G000769 (gene) Wax gourd (B227) v1

Overview
NameBhi04G000769
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionElongation factor 1-gamma
Locationchr4: 23749034 .. 23749332 (-)
RNA-Seq ExpressionBhi04G000769
SyntenyBhi04G000769
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACTGTTTCATTCGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAACGAATGGATCTCGCTCGTAAATATGCTTTCAGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAAGGTTTATGGCTTTTCCGTGGACAAGAGATCCCAAAATTCGTCCTGGACGAGTGCTACGACATTGAACTTTATGAATGGAGGAAGGTTGATATATCGAACAAGGGATAA

mRNA sequence

GATCTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACTGTTTCATTCGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAACGAATGGATCTCGCTCGTAAATATGCTTTCAGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAAGGTTTATGGCTTTTCCGTGGACAAGAGATCCCAAAATTCGTCCTGGACGAGTGCTACGACATTGAACTTTATGAATGGAGGAAGGTTGATATATCGAACAAGGGATAA

Coding sequence (CDS)

GATCTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGATTACAAGTACAATGATGAGAATACTGTTTCATTCGTGACTTTGAACAAGGTTGGTGGCTTTCTCCAACGAATGGATCTCGCTCGTAAATATGCTTTCAGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAAGGTTTATGGCTTTTCCGTGGACAAGAGATCCCAAAATTCGTCCTGGACGAGTGCTACGACATTGAACTTTATGAATGGAGGAAGGTTGATATATCGAACAAGGGATAA

Protein sequence

SWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFRKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDIELYEWRKVDISNKG
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT1G09640.11.1e-4785.42Translation elongation factor EF1B, gamma chain [more]
AT1G57720.11.1e-4785.42Translation elongation factor EF1B, gamma chain [more]
AT1G57720.21.1e-4785.42Translation elongation factor EF1B, gamma chain [more]
AT1G09640.21.7e-1364.00Translation elongation factor EF1B, gamma chain [more]
Match NameE-valueIdentityDescription
Q9FUM17.3e-4988.54Elongation factor 1-gamma OS=Prunus avium OX=42229 PE=2 SV=1[more]
Q9ZRI79.5e-4989.58Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g022... [more]
Q6YW469.5e-4989.58Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g022... [more]
Q5Z6273.6e-4887.50Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g057... [more]
O044871.5e-4685.42Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana OX=3702 GN=At1g0964... [more]
Match NameE-valueIdentityDescription
A0A5D3DRU37.6e-4993.75Elongation factor 1-gamma-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3C5507.6e-4993.75elongation factor 1-gamma-like OS=Cucumis melo OX=3656 GN=LOC103496769 PE=4 SV=1[more]
A0A072USZ09.9e-4993.75Putative gamma class glutathione transferase EF1Bgamma2 OS=Medicago truncatula O... [more]
A0A072UTU29.9e-4993.75Translation elongation factor EF1B, gamma chain OS=Medicago truncatula OX=3880 G... [more]
A0A2Z6MV639.9e-4993.75Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_282160 PE=4 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001662Elongation factor 1B gamma, C-terminalSMARTSM01183EF1G_2coord: 1..72
e-value: 5.6E-23
score: 92.3
IPR001662Elongation factor 1B gamma, C-terminalPFAMPF00647EF1Gcoord: 2..72
e-value: 2.7E-26
score: 91.6
IPR001662Elongation factor 1B gamma, C-terminalPROSITEPS50040EF1G_Ccoord: 1..98
score: 48.195202
IPR036433Elongation factor EF1B gamma, C-terminal domain superfamilyGENE3D3.30.70.1010Translation elongation factor EF1B, gamma chain, conserved domaincoord: 1..98
e-value: 2.4E-42
score: 146.3
IPR036433Elongation factor EF1B gamma, C-terminal domain superfamilySUPERFAMILY89942eEF1-gamma domaincoord: 2..96
IPR044628Elongation factor 1-gamma, plantPANTHERPTHR44372ELONGATION FACTOR 1-GAMMA 1-RELATEDcoord: 2..96
NoneNo IPR availablePANTHERPTHR44372:SF5SUBFAMILY NOT NAMEDcoord: 2..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M000769Bhi04M000769mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0006414 translational elongation
molecular_function GO:0004364 glutathione transferase activity
molecular_function GO:0003746 translation elongation factor activity