Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGATAGTTTCCGCATGAATCCTCTTCCGATCATAGATCTCCGTCTCCTCTCTCAATCCGAGCTCTATTGTCTTTCCCGTTTCTCCTCATCCTCATCATCTTCTTCTTCAACCTCCCAATCCAACAACGAAGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAATGAGTCCGCTGGTAGCCGTAAACAAACCTATTCTCGTCTCCGTTTAGCCCCTCGCAAACCCCAATTTTCTTCCTCTTCATCCTCCTCCACAATTCGCCCTCAATCCCCTGACCGCCTTGATACAGAGAGCGCTCAAATTGTTACTCTATTTAAGCAACTCTTTGTTGGAGATCCTCATTGTGCCGTCAACGATAGCTACGGCGACGGAGATGAGGACCTGGTACTTGTTAACCATATTTACGACGAATCGGTACCTGATTCTTCCTACGCTATTTTCCAAAGTATTCCTGTTGATATTATTGATAGCAGTTACGCCCCGATTAAGCGGCGGAGAGGTCGACCGCGGAAGGATAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGGAATTCAAAAGCGGATGCGATAAACCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA
mRNA sequence
ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGATAGTTTCCGCATGAATCCTCTTCCGATCATAGATCTCCGTCTCCTCTCTCAATCCGAGCTCTATTGTCTTTCCCGTTTCTCCTCATCCTCATCATCTTCTTCTTCAACCTCCCAATCCAACAACGAAGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAATGAGTCCGCTGGTAGCCGTAAACAAACCTATTCTCGTCTCCGTTTAGCCCCTCGCAAACCCCAATTTTCTTCCTCTTCATCCTCCTCCACAATTCGCCCTCAATCCCCTGACCGCCTTGATACAGAGAGCGCTCAAATTGTTACTCTATTTAAGCAACTCTTTGTTGGAGATCCTCATTGTGCCGTCAACGATAGCTACGGCGACGGAGATGAGGACCTGGTACTTGTTAACCATATTTACGACGAATCGGTACCTGATTCTTCCTACGCTATTTTCCAAAGTATTCCTGTTGATATTATTGATAGCAGTTACGCCCCGATTAAGCGGCGGAGAGGTCGACCGCGGAAGGATAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGGAATTCAAAAGCGGATGCGATAAACCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA
Coding sequence (CDS)
ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGATAGTTTCCGCATGAATCCTCTTCCGATCATAGATCTCCGTCTCCTCTCTCAATCCGAGCTCTATTGTCTTTCCCGTTTCTCCTCATCCTCATCATCTTCTTCTTCAACCTCCCAATCCAACAACGAAGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAATGAGTCCGCTGGTAGCCGTAAACAAACCTATTCTCGTCTCCGTTTAGCCCCTCGCAAACCCCAATTTTCTTCCTCTTCATCCTCCTCCACAATTCGCCCTCAATCCCCTGACCGCCTTGATACAGAGAGCGCTCAAATTGTTACTCTATTTAAGCAACTCTTTGTTGGAGATCCTCATTGTGCCGTCAACGATAGCTACGGCGACGGAGATGAGGACCTGGTACTTGTTAACCATATTTACGACGAATCGGTACCTGATTCTTCCTACGCTATTTTCCAAAGTATTCCTGTTGATATTATTGATAGCAGTTACGCCCCGATTAAGCGGCGGAGAGGTCGACCGCGGAAGGATAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGGAATTCAAAAGCGGATGCGATAAACCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA
Protein sequence
MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFKQLFVGDPHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAAAEEEEEEIVMVML
Homology
BLAST of Bhi04G000631 vs. TAIR 10
Match:
AT1G22310.2 (methyl-CPG-binding domain 8 )
HSP 1 Score: 90.1 bits (222), Expect = 2.4e-18
Identity = 79/176 (44.89%), Postives = 102/176 (57.95%), Query Frame = 0
Query: 20 LPIIDLRLLSQSELYCLSRFSS-SSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQT 79
LP+ID RLLSQSEL LS+ SS S SSS+S + S DD L PKIDRSVFNESAGSRKQT
Sbjct: 26 LPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFNESAGSRKQT 85
Query: 80 YSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFKQLFVGDPHCAVNDSYGDG 139
+ RLRLA R PQ S + Q D E Q+ +L + LF D + + + +G
Sbjct: 86 FLRLRLA-RHPQPPEEPPSP--QRQRDDSSREEQTQVASLLRSLFNVDSNQS-KEEEDEG 145
Query: 140 DEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYAPIKRRRGRPRKDSN 189
+E+L + + +SY ++Q +D I +S IKR+RGRPRK N
Sbjct: 146 EEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRPRKIRN 192
BLAST of Bhi04G000631 vs. ExPASy Swiss-Prot
Match:
Q9LME6 (Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 3.4e-17
Identity = 79/176 (44.89%), Postives = 102/176 (57.95%), Query Frame = 0
Query: 20 LPIIDLRLLSQSELYCLSRFSS-SSSSSSSTSQSNNEDDVLIPKIDRSVFNESAGSRKQT 79
LP+ID RLLSQSEL LS+ SS S SSS+S + S DD L PKIDRSVFNESAGSRKQT
Sbjct: 26 LPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFNESAGSRKQT 85
Query: 80 YSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFKQLFVGDPHCAVNDSYGDG 139
+ RLRLA R PQ S + Q D E Q+ +L + LF D + + + +G
Sbjct: 86 FLRLRLA-RHPQPPEEPPSP--QRQRDDSSREEQTQVASLLRSLFNVDSNQS-KEEEDEG 145
Query: 140 DEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYAPIKRRRGRPRKDSN 189
+E+L + + +SY ++Q +D I +S IKR+RGRPRK N
Sbjct: 146 EEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRPRKIRN 192
BLAST of Bhi04G000631 vs. ExPASy TrEMBL
Match:
A0A0A0LPH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368980 PE=4 SV=1)
HSP 1 Score: 380.6 bits (976), Expect = 4.7e-102
Identity = 207/225 (92.00%), Postives = 211/225 (93.78%), Query Frame = 0
Query: 1 MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLI 60
MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF SSSSSSSSTSQSNNEDDVLI
Sbjct: 1 MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRF-SSSSSSSSTSQSNNEDDVLI 60
Query: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFK 120
PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIV LF
Sbjct: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVHLFN 120
Query: 121 QLFVGDPHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRR 180
QLFVGD HC VNDSYGDGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS PIKRRR
Sbjct: 121 QLFVGDSHCVVNDSYGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSQVPIKRRR 180
Query: 181 GRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAAAEEEEEEIVMVML 226
GRPRKDSNRF QSNGNAAPEFKSGCDKPAAAAA +EEIVMVML
Sbjct: 181 GRPRKDSNRFVQSNGNAAPEFKSGCDKPAAAAA--AKEEIVMVML 222
BLAST of Bhi04G000631 vs. ExPASy TrEMBL
Match:
A0A5A7VH26 (Methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004810 PE=4 SV=1)
HSP 1 Score: 376.3 bits (965), Expect = 8.8e-101
Identity = 206/225 (91.56%), Postives = 211/225 (93.78%), Query Frame = 0
Query: 1 MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLI 60
MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF SSSSSSSSTSQSNNEDDVLI
Sbjct: 1 MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRF-SSSSSSSSTSQSNNEDDVLI 60
Query: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFK 120
PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQS DRLDTESAQIV LF
Sbjct: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSSDRLDTESAQIVHLFN 120
Query: 121 QLFVGDPHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRR 180
QLFVGD HCAVNDS+GDGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+APIKRRR
Sbjct: 121 QLFVGDSHCAVNDSHGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSHAPIKRRR 180
Query: 181 GRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAAAEEEEEEIVMVML 226
GRPRKDSNRF QSNGNAAPEFKSG DKPA AAA EEEIVMVML
Sbjct: 181 GRPRKDSNRFVQSNGNAAPEFKSGSDKPAGAAA---EEEIVMVML 221
BLAST of Bhi04G000631 vs. ExPASy TrEMBL
Match:
A0A1S3BAU3 (methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488067 PE=4 SV=1)
HSP 1 Score: 376.3 bits (965), Expect = 8.8e-101
Identity = 206/225 (91.56%), Postives = 211/225 (93.78%), Query Frame = 0
Query: 1 MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLI 60
MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF SSSSSSSSTSQSNNEDDVLI
Sbjct: 1 MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRF-SSSSSSSSTSQSNNEDDVLI 60
Query: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFK 120
PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQS DRLDTESAQIV LF
Sbjct: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSSDRLDTESAQIVHLFN 120
Query: 121 QLFVGDPHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRR 180
QLFVGD HCAVNDS+GDGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+APIKRRR
Sbjct: 121 QLFVGDSHCAVNDSHGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSHAPIKRRR 180
Query: 181 GRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAAAEEEEEEIVMVML 226
GRPRKDSNRF QSNGNAAPEFKSG DKPA AAA EEEIVMVML
Sbjct: 181 GRPRKDSNRFVQSNGNAAPEFKSGSDKPAGAAA---EEEIVMVML 221
BLAST of Bhi04G000631 vs. ExPASy TrEMBL
Match:
A0A1S3BC64 (methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488067 PE=4 SV=1)
HSP 1 Score: 371.7 bits (953), Expect = 2.2e-99
Identity = 200/216 (92.59%), Postives = 205/216 (94.91%), Query Frame = 0
Query: 1 MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLI 60
MASTTMV S SNDS+RMNPLPIIDLRLLSQSEL+CLSRF SSSSSSSSTSQSNNEDDVLI
Sbjct: 1 MASTTMVPSSSNDSYRMNPLPIIDLRLLSQSELHCLSRF-SSSSSSSSTSQSNNEDDVLI 60
Query: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFK 120
PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQS DRLDTESAQIV LF
Sbjct: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSSDRLDTESAQIVHLFN 120
Query: 121 QLFVGDPHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRR 180
QLFVGD HCAVNDS+GDGDEDLVLVNH YDESVPDSSYAIFQSIPVD+IDSS+APIKRRR
Sbjct: 121 QLFVGDSHCAVNDSHGDGDEDLVLVNHTYDESVPDSSYAIFQSIPVDVIDSSHAPIKRRR 180
Query: 181 GRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAAAEEE 217
GRPRKDSNRF QSNGNAAPEFKSG DKPA AAAEEE
Sbjct: 181 GRPRKDSNRFVQSNGNAAPEFKSGSDKPAGAAAEEE 215
BLAST of Bhi04G000631 vs. ExPASy TrEMBL
Match:
A0A6J1K4I5 (methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492221 PE=4 SV=1)
HSP 1 Score: 358.2 bits (918), Expect = 2.5e-95
Identity = 198/225 (88.00%), Postives = 202/225 (89.78%), Query Frame = 0
Query: 1 MASTTMVASPSNDSFRMNPLPIIDLRLLSQSELYCLSRFSSSSSSSSSTSQSNNEDDVLI 60
MASTTMVASPSND+ RMN LPIIDLR LSQS+LYCLSRF SSSSSSTSQSNN+DDVLI
Sbjct: 1 MASTTMVASPSNDNLRMNTLPIIDLRRLSQSDLYCLSRF--FSSSSSSTSQSNNDDDVLI 60
Query: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSSSSSTIRPQSPDRLDTESAQIVTLFK 120
PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSS SSST R QS DRLD SAQIVT K
Sbjct: 61 PKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLK 120
Query: 121 QLFVGDPHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRR 180
QLFVGD HCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSY PIKRRR
Sbjct: 121 QLFVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRR 180
Query: 181 GRPRKDSNRFAQSNGNAAPEFKSGCDKPAAAAAEEEEEEIVMVML 226
GRPRKDSNRFAQSNGNAAP KSGC+K AA EEEEEIVMVML
Sbjct: 181 GRPRKDSNRFAQSNGNAAPNSKSGCEKRAA----EEEEEIVMVML 219
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT1G22310.2 | 2.4e-18 | 44.89 | methyl-CPG-binding domain 8 | [more] |
Match Name | E-value | Identity | Description | |
Q9LME6 | 3.4e-17 | 44.89 | Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 G... | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LPH8 | 4.7e-102 | 92.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368980 PE=4 SV=1 | [more] |
A0A5A7VH26 | 8.8e-101 | 91.56 | Methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Cucumis melo var. m... | [more] |
A0A1S3BAU3 | 8.8e-101 | 91.56 | methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Cucumis melo OX=365... | [more] |
A0A1S3BC64 | 2.2e-99 | 92.59 | methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Cucumis melo OX=365... | [more] |
A0A6J1K4I5 | 2.5e-95 | 88.00 | methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita maxima OX=3661 ... | [more] |