Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAATCTAGCAAAAGCTTACGATGGCTATCAATTTTATTTACCAGCTTTTCTGGATTTTCGTGGTAGAATCTACCACAATGGTGGCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCTTGATAGTCTTTGTGGGTGAAAGTAAGAAAACAATCCGTAGTGAGATGGACTTCCGCAAAAATGCTAATTGTGCTATAACGTTTCATTACAAGCCTTTCGAGACCCATCAAAAGATTGATCATTCGTTAAATGCTAATGTATTTGGCAAAAGTAAGAAAGATTTGATTGAGTATTCTCGAAAAGCAAAACACCATAATGCTAGATAA
mRNA sequence
ATGCTCAATCTAGCAAAAGCTTACGATGGCTATCAATTTTATTTACCAGCTTTTCTGGATTTTCGTGGTAGAATCTACCACAATGGTGGCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCTTGATAGTCTTTGTGGGTGAAAGTAAGAAAACAATCCGTAGTGAGATGGACTTCCGCAAAAATGCTAATTGTGCTATAACGTTTCATTACAAGCCTTTCGAGACCCATCAAAAGATTGATCATTCGTTAAATGCTAATGTATTTGGCAAAAGTAAGAAAGATTTGATTGAGTATTCTCGAAAAGCAAAACACCATAATGCTAGATAA
Coding sequence (CDS)
ATGCTCAATCTAGCAAAAGCTTACGATGGCTATCAATTTTATTTACCAGCTTTTCTGGATTTTCGTGGTAGAATCTACCACAATGGTGGCTTGCATTTCCATGATCGTGATCTAGCAAGAAGCTTGATAGTCTTTGTGGGTGAAAGTAAGAAAACAATCCGTAGTGAGATGGACTTCCGCAAAAATGCTAATTGTGCTATAACGTTTCATTACAAGCCTTTCGAGACCCATCAAAAGATTGATCATTCGTTAAATGCTAATGTATTTGGCAAAAGTAAGAAAGATTTGATTGAGTATTCTCGAAAAGCAAAACACCATAATGCTAGATAA
Protein sequence
MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFRKNANCAITFHYKPFETHQKIDHSLNANVFGKSKKDLIEYSRKAKHHNAR
Homology
BLAST of Bhi02G001178 vs. ExPASy Swiss-Prot
Match:
P10581 (Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 2.8e-09
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 0
Query: 2 LNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVF---VGESKKTIRSEMD 61
+ +A+AY Y+ Y P FLDFRGR Y +G HFH+RDL RSLI+F + TI S++
Sbjct: 518 MKIAEAYLDYKIYFPIFLDFRGRNYRHGPFHFHERDLVRSLIIFDESDDSAAHTINSDVG 577
Query: 62 FRKNANCAITFHY 72
R N I+ Y
Sbjct: 578 DRILHNFLISAAY 590
BLAST of Bhi02G001178 vs. ExPASy Swiss-Prot
Match:
P33539 (Probable DNA-directed RNA polymerase OS=Agaricus bitorquis OX=5343 PE=3 SV=1)
HSP 1 Score: 45.1 bits (105), Expect = 6.1e-04
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYH-NGGLHFHDRDLARSLIVF 46
+++LA Y +FYLP ++DFRGR+Y + + + DLARSLI+F
Sbjct: 595 IISLASLYKDNEFYLPVYVDFRGRVYPLSNYISYQGGDLARSLILF 640
BLAST of Bhi02G001178 vs. NCBI nr
Match:
XP_020594099.1 (uncharacterized protein LOC110034152 [Phalaenopsis equestris])
HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVG-ESKKTIRSEMDF 60
++ LA AYDGY FYLPAFLDFRGRIY +G LHFH+RDLARSLI+F G ESK +I EM
Sbjct: 234 IIKLAIAYDGYHFYLPAFLDFRGRIYRSGILHFHERDLARSLILFAGTESKDSISEEMKI 293
Query: 61 RKNANCAITFHYKPFETHQKIDHSLN--ANVFGKSKKDLIEYSRKAKH 106
+ A FHYK F T +DH+ N F +K+LI+++R+AKH
Sbjct: 294 Q--IMVAAAFHYKKFIT---VDHAKEWCLNNFYNLEKNLIDFAREAKH 336
BLAST of Bhi02G001178 vs. NCBI nr
Match:
XP_020251012.1 (uncharacterized protein LOC109828426, partial [Asparagus officinalis])
HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
++ LAKAYDGY FYLPAFLDFRGRIY +G LHFH+RDLARSLI+F G K + +
Sbjct: 461 IIKLAKAYDGYHFYLPAFLDFRGRIYRSGILHFHERDLARSLILFAG--TKFEKPLSNIY 520
Query: 61 KNANCAITFHYKPFETHQKIDHSLNANVFGKSKKDLIEYSRKAKH 106
N A FHYK F T + N+ K K++ I+++R+AKH
Sbjct: 521 NNIIDATAFHYKKFTTVNDAKYWFLNNI-DKIKRNPIDFAREAKH 562
BLAST of Bhi02G001178 vs. NCBI nr
Match:
YP_009315942.1 (DNA-dependent RNA polymerase [Cocos nucifera] >AOX12936.1 DNA-dependent RNA polymerase [Cocos nucifera])
HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
+L LA AYDGY+FYLPAFLDFRGRIY +G LHFH+RD+ARSLIVF + K+ S + R
Sbjct: 429 ILTLASAYDGYKFYLPAFLDFRGRIYRSGILHFHERDIARSLIVFANNNNKS--SSYNCR 488
Query: 61 KNANCAITFHYKPFETHQKIDHSL-----NANVFGKSKKDLIEYSRKAKH 106
A FHYK F + I S+ N +VF S LI++++KAK+
Sbjct: 489 TVLISAAPFHYKSFVS---ITDSIQWYIDNKSVFNTSDDSLIQFAQKAKN 533
BLAST of Bhi02G001178 vs. NCBI nr
Match:
XP_020547357.1 (uncharacterized protein LOC110011516 [Sesamum indicum])
HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 52/102 (50.98%), Postives = 67/102 (65.69%), Query Frame = 0
Query: 7 AYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMD--FRKNAN 66
AY+GYQFYLP+F+DFRGRIY +G LHFH+RDLARSLIVF + SE+D RK
Sbjct: 56 AYEGYQFYLPSFIDFRGRIYRSGILHFHERDLARSLIVFAPNPYDSYDSEIDKRCRKILY 115
Query: 67 CAITFHYKPFETHQKIDHSLNAN--VFGKSKKDLIEYSRKAK 105
C+ FHYK F+++ + + N N F S LIE++ AK
Sbjct: 116 CSAPFHYKSFQSYTESNEWYNDNKSSFNTSDHSLIEFALHAK 157
BLAST of Bhi02G001178 vs. NCBI nr
Match:
PRQ23030.1 (putative DNA-directed RNA polymerase [Rosa chinensis])
HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
++NLA AY+GY+FYLPAFLDFRGRIY G LHFH+RDLARSLIVF +SKK + M+
Sbjct: 493 VINLASAYEGYKFYLPAFLDFRGRIYRAGVLHFHERDLARSLIVFSNKSKKFVSMSMEDH 552
Query: 61 KNANCAIT----FHYKPFETH 78
K IT FH+K F ++
Sbjct: 553 KFLTAMITSAAAFHFKKFTSN 573
BLAST of Bhi02G001178 vs. ExPASy TrEMBL
Match:
A0A2Z2CD19 (DNA-directed RNA polymerase OS=Cocos nucifera OX=13894 GN=RNA_pol PE=3 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
+L LA AYDGY+FYLPAFLDFRGRIY +G LHFH+RD+ARSLIVF + K+ S + R
Sbjct: 429 ILTLASAYDGYKFYLPAFLDFRGRIYRSGILHFHERDIARSLIVFANNNNKS--SSYNCR 488
Query: 61 KNANCAITFHYKPFETHQKIDHSL-----NANVFGKSKKDLIEYSRKAKH 106
A FHYK F + I S+ N +VF S LI++++KAK+
Sbjct: 489 TVLISAAPFHYKSFVS---ITDSIQWYIDNKSVFNTSDDSLIQFAQKAKN 533
BLAST of Bhi02G001178 vs. ExPASy TrEMBL
Match:
A0A2P6PM98 (DNA-directed RNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0256711 PE=3 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
++NLA AY+GY+FYLPAFLDFRGRIY G LHFH+RDLARSLIVF +SKK + M+
Sbjct: 493 VINLASAYEGYKFYLPAFLDFRGRIYRAGVLHFHERDLARSLIVFSNKSKKFVSMSMEDH 552
Query: 61 KNANCAIT----FHYKPFETH 78
K IT FH+K F ++
Sbjct: 553 KFLTAMITSAAAFHFKKFTSN 573
BLAST of Bhi02G001178 vs. ExPASy TrEMBL
Match:
A0A6M9TTE7 (DNA-directed RNA polymerase OS=Mirabilis himalaica OX=482968 GN=ORF312 PE=3 SV=1)
HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
+LNLA AY+GY FYLPAFLDFRGRIY G LHFH+RDLARSLIVF G+ +KT
Sbjct: 54 ILNLASAYEGYTFYLPAFLDFRGRIYRCGILHFHERDLARSLIVFAGDDEKT------NT 113
Query: 61 KNANCAI----TFHYKPFETH 78
K +CA+ FHYK FE++
Sbjct: 114 KVNSCAVISAFAFHYKSFESY 128
BLAST of Bhi02G001178 vs. ExPASy TrEMBL
Match:
A0A6J5Y9W3 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3511 PE=3 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
++ LA+AY+GY FYLPAFLDFRGRIY +G LHFH+RDLARS+IVF I+S +
Sbjct: 424 IMKLAQAYEGYHFYLPAFLDFRGRIYRSGVLHFHERDLARSMIVFA-----DIKSSGNID 483
Query: 61 KNAN-CAITFHYKPFETHQKIDHSLNANVFGKS-KKDLIEYSRKAK 105
NA A FHYK F + + + N N S DL+ Y+R+AK
Sbjct: 484 MNAYLAAAAFHYKSFVSVDEALYFSNNNFLQLSHDDDLLMYAREAK 524
BLAST of Bhi02G001178 vs. ExPASy TrEMBL
Match:
A0A6J1IE03 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111474651 PE=3 SV=1)
HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0
Query: 1 MLNLAKAYDGYQFYLPAFLDFRGRIYHNGGLHFHDRDLARSLIVFVGESKKTIRSEMDFR 60
+LNLA+ YDGY+FYLPAFLDFRGRIY +G LHFH+ DLARSLIVF ++++ I+ R
Sbjct: 46 ILNLARVYDGYKFYLPAFLDFRGRIYRSGVLHFHECDLARSLIVFANDNQEEIKCNSLIR 105
Query: 61 KNANCAITFHYKPFETHQKIDHSLNAN 88
+ FH++ F + + +N N
Sbjct: 106 DQVELSTFFHFQSFNSMLEAVDFVNNN 132
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
P10581 | 2.8e-09 | 45.21 | Probable DNA-directed RNA polymerase OS=Zea mays OX=4577 PE=3 SV=1 | [more] |
P33539 | 6.1e-04 | 45.65 | Probable DNA-directed RNA polymerase OS=Agaricus bitorquis OX=5343 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_020594099.1 | 1.3e-19 | 55.56 | uncharacterized protein LOC110034152 [Phalaenopsis equestris] | [more] |
XP_020251012.1 | 2.1e-17 | 51.43 | uncharacterized protein LOC109828426, partial [Asparagus officinalis] | [more] |
YP_009315942.1 | 2.7e-17 | 50.91 | DNA-dependent RNA polymerase [Cocos nucifera] >AOX12936.1 DNA-dependent RNA poly... | [more] |
XP_020547357.1 | 1.0e-16 | 50.98 | uncharacterized protein LOC110011516 [Sesamum indicum] | [more] |
PRQ23030.1 | 3.0e-16 | 58.02 | putative DNA-directed RNA polymerase [Rosa chinensis] | [more] |
Match Name | E-value | Identity | Description | |
A0A2Z2CD19 | 1.3e-17 | 50.91 | DNA-directed RNA polymerase OS=Cocos nucifera OX=13894 GN=RNA_pol PE=3 SV=1 | [more] |
A0A2P6PM98 | 1.4e-16 | 58.02 | DNA-directed RNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0256711 ... | [more] |
A0A6M9TTE7 | 2.5e-16 | 60.49 | DNA-directed RNA polymerase OS=Mirabilis himalaica OX=482968 GN=ORF312 PE=3 SV=1 | [more] |
A0A6J5Y9W3 | 1.6e-15 | 50.00 | DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS3511 PE=... | [more] |
A0A6J1IE03 | 1.6e-15 | 49.43 | DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111474651 PE=3 SV=... | [more] |