Bhi01G000715 (gene) Wax gourd (B227) v1

Overview


Name	Bhi01G000715
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	transcription elongation factor B polypeptide 3
Location	chr1: 18360482 .. 18361162 (+)
RNA-Seq Expression	Bhi01G000715
Synteny	Bhi01G000715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAACGAAGCTATAGATAGTTTGAGGTTTCTTGGAGATGTTGGCGACACCGATTTACATGTTCTAGAGCGTATTCTCCCACATTGCACCGTTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGCTGTGGAAAAACTTTTATGAAAAAAAGTTTGGTAAAAATGATTCTGATCTTGTGATTAAGAAGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAAGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG

mRNA sequence

ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAACGAAGCTATAGATAGTTTGAGGTTTCTTGGAGATGTTGGCGACACCGATTTACATGTTCTAGAGCGTATTCTCCCACATTGCACCGTTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGCTGTGGAAAAACTTTTATGAAAAAAAGTTTGGTAAAAATGATTCTGATCTTGTGATTAAGAAGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAAGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG

Coding sequence (CDS)

ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAACGAAGCTATAGATAGTTTGAGGTTTCTTGGAGATGTTGGCGACACCGATTTACATGTTCTAGAGCGTATTCTCCCACATTGCACCGTTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGCTGTGGAAAAACTTTTATGAAAAAAAGTTTGGTAAAAATGATTCTGATCTTGTGATTAAGAAGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAAGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG

Protein sequence

MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK

Homology

[Close]

BLAST of Bhi01G000715 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 8.3e-27
Identity = 77/210 (36.67%), Postives = 118/210 (56.19%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           + +AID+++++G VG  D  +LE+IL HCT++QL HIE+++   DL+P+TDK WK FY+K
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 78  KFGKNDSDLVIKKMKYKK-ESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSR 137
            +G+ D   +I+ +++ K   FKW+ LYE K+ A+++K  E+  R K+  + EN RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 138 KIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQ 197
           +   C   S +   KR   G   S  N                           GH   +
Sbjct: 138 QTKVC---SKAPPSKRPFWGNSASGYNL--------------------------GH--VK 196

Query: 198 SKILKKAKREALQCIETKNVIAFRRNAMQK 227
           S I+KKAK + L+  E KN+ A +RN +QK
Sbjct: 198 SNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of Bhi01G000715 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 118.2 bits (295), Expect = 8.3e-27
Identity = 77/210 (36.67%), Postives = 118/210 (56.19%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           + +AID+++++G VG  D  +LE+IL HCT++QL HIE+++   DL+P+TDK WK FY+K
Sbjct: 18  VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77

Query: 78  KFGKNDSDLVIKKMKYKK-ESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSR 137
            +G+ D   +I+ +++ K   FKW+ LYE K+ A+++K  E+  R K+  + EN RKQSR
Sbjct: 78  HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137

Query: 138 KIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQ 197
           +   C   S +   KR   G   S  N                           GH   +
Sbjct: 138 QTKVC---SKAPPSKRPFWGNSASGYNL--------------------------GH--VK 196

Query: 198 SKILKKAKREALQCIETKNVIAFRRNAMQK 227
           S I+KKAK + L+  E KN+ A +RN +QK
Sbjct: 198 SNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196

[Close]

BLAST of Bhi01G000715 vs. NCBI nr
Match: XP_038885873.1 (uncharacterized protein LOC120076176 [Benincasa hispida])

HSP 1 Score: 436.0 bits (1120), Expect = 1.9e-118
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60
           MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
           RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA
Sbjct: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180
           RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180

Query: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 227
           QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Sbjct: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226

[Close]

BLAST of Bhi01G000715 vs. NCBI nr
Match: XP_038885879.1 (uncharacterized protein LOC120076185 [Benincasa hispida])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 215/226 (95.13%), Postives = 220/226 (97.35%), Query Frame = 0


Query: 1   MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60
           MCEEVSKIASSFLSHDSINEAID+LRFL DVGDTDLHVL+RILPHCTVDQL+HIENSSKG
Sbjct: 1   MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60

Query: 61  RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
           RDLT VTDKLWKNFY KKFGKND DL I++MKYKKESFKWKQLYEAKMEALEKKAMEIEA
Sbjct: 61  RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120

Query: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180
           RYKQNCQKENARKQSRKIIFCEDVSSSNNKK RSEGTIKSECNTTESKILKKPNREAQMC
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMC 180

Query: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 227
           QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Sbjct: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226

[Close]

BLAST of Bhi01G000715 vs. NCBI nr
Match: XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-56
Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 0


Query: 16  DSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFY 75
           + +N+AIDSLRFLGDVG TDL+ LE ILPHCTVDQLMHIEN SKGRDLTP+T+KLWK FY
Sbjct: 3   EQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFY 62

Query: 76  EKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
           E+KFGK+D + V+ +MK+ KESF+WKQ+YE K++ LE KA+E+E RY +NCQ E ARKQS
Sbjct: 63  ERKFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQS 122

Query: 136 RKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
           R++  CE +S S                   SK+LKKP    ++CQVSS    K  +   
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVHTKVCQVSSANNNKRSYLGG 182

Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
            SKILKKA++E LQ IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Bhi01G000715 vs. NCBI nr
Match: KAG6582092.1 (hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.6 bits (571), Expect = 8.9e-55
Identity = 126/209 (60.29%), Postives = 154/209 (73.68%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSLRFLGDVG+TDL+ LERILPHCTV+QLM IEN SKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           KFGK+  + V++ MK+ KESFKWKQ+YE K++ LE+KA+EIE RY QNC+ E ARKQSR+
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124

Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           +  CE +S S                   SK+LKKP    ++CQVSS    K  +    S
Sbjct: 125 VKICE-ISPS-------------------SKVLKKPKVHTKICQVSSANNNKRSYVGGTS 184

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKA++E LQ IETKN IAFRRNA+QK
Sbjct: 185 KILKKARKETLQSIETKNAIAFRRNAVQK 192

[Close]

BLAST of Bhi01G000715 vs. NCBI nr
Match: KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 222.2 bits (565), Expect = 4.4e-54
Identity = 124/211 (58.77%), Postives = 154/211 (72.99%), Query Frame = 0


Query: 16  DSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFY 75
           + +N+AIDSLRFLGDVG  DL+ LE ILPHCTVDQLMHIEN SKGRDLTPVT+KLWK FY
Sbjct: 3   EQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKTFY 62

Query: 76  EKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
           EKKFG++  + V+++MK+ KESF+WKQ+YE KM+ LE+KA+EIE RY QNC+ E  RKQS
Sbjct: 63  EKKFGEDGVNGVLERMKH-KESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQS 122

Query: 136 RKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
           R++  CE +S S                   SK+LKKP  + ++CQVSS    K  +   
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVQTKICQVSSATNNKRSYGGG 182

Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
            SKILKKA++E  Q IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETRQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match: A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 0


Query: 16  DSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFY 75
           + +N+AIDSLRFLGDVG TDL+ LE ILPHCTVDQLMHIEN SKGRDLTP+T+KLWK FY
Sbjct: 3   EQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFY 62

Query: 76  EKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
           E+KFGK+D + V+ +MK+ KESF+WKQ+YE K++ LE KA+E+E RY +NCQ E ARKQS
Sbjct: 63  ERKFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQS 122

Query: 136 RKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
           R++  CE +S S                   SK+LKKP    ++CQVSS    K  +   
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVHTKVCQVSSANNNKRSYLGG 182

Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
            SKILKKA++E LQ IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETLQSIETKNLIAFRRNAIQK 192

[Close]

BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match: A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 4.7e-54
Identity = 126/209 (60.29%), Postives = 151/209 (72.25%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AIDSLRFLGDVG TDL+ LE ILPHCTV+QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5   VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64

Query: 78  KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           KFGK+  + V++ MK+ KESFKWKQ+YE K++ LE+KA+EIE RY QNCQ E ARKQSR+
Sbjct: 65  KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124

Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           +  CE +S S                   SK+LKK     + CQVSS    K  +    S
Sbjct: 125 VKICE-ISPS-------------------SKVLKKSKVHTKFCQVSSAHNDKRSYLGGTS 184

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKA++E LQ IETKNVIAFRRN +QK
Sbjct: 185 KILKKARKETLQSIETKNVIAFRRNTVQK 192

[Close]

BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AID++RFLGDVG+TD+H+LERILPHCTVDQLMH+E SS+GRDLTPVTDKLWK FYE+
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 78  KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           +FGK  +  VI++M+ K+ +F+W QLYEAKM+ +EK   +   R KQ+  KENARKQSR+
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           I  C  V  S+NK  RS G      N   +K                            +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AID++RFLGDVG+TD+H+LERILPHCTVDQLMH+E SS+GRDLTPVTDKLWK FYE+
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 78  KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           +FGK  +  VI++M+ K+ +F+W QLYEAKM+ +EK   +   R KQ+  KENARKQSR+
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           I  C  V  S+NK  RS G      N   +K                            +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

[Close]

BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 0


Query: 18  INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
           +N+AID++RFLGDVG+TD+H+LERILPHCTVDQLMH+E SS+GRDLTPVTDKLWK FYE+
Sbjct: 15  VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74

Query: 78  KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
           +FGK  +  VI++M+ K+ +F+W QLYEAKM+ +EK   +   R KQ+  KENARKQSR+
Sbjct: 75  QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134

Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
           I  C  V  S+NK  RS G      N   +K                            +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193

Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
           KILKKAK E LQ  E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193

The following BLAST results are available for this feature:

BLAST of Bhi01G000715 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	8.3e-27	36.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	8.3e-27	36.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

BLAST of Bhi01G000715 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000715 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885873.1	1.9e-118	100.00	uncharacterized protein LOC120076176 [Benincasa hispida]	[more]
XP_038885879.1	1.3e-111	95.13	uncharacterized protein LOC120076185 [Benincasa hispida]	[more]
XP_022979571.1	2.1e-56	59.24	uncharacterized protein LOC111479252 [Cucurbita maxima]	[more]
KAG6582092.1	8.9e-55	60.29	hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6582214.1	4.4e-54	58.77	hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi01G000715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR58	1.0e-56	59.24	uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252...	[more]
A0A6J1ITM2	4.7e-54	60.29	uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243...	[more]
A0A5D3BGR1	1.3e-43	52.15	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	1.3e-43	52.15	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	1.3e-43	52.15	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..128
None	No IPR available	GENE3D	6.10.250.3180		coord: 24..130 e-value: 4.4E-22 score: 80.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..193
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 17..178
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 29..138 e-value: 1.5E-24 score: 86.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000715	Bhi01M000715	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus