Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAACGAAGCTATAGATAGTTTGAGGTTTCTTGGAGATGTTGGCGACACCGATTTACATGTTCTAGAGCGTATTCTCCCACATTGCACCGTTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGCTGTGGAAAAACTTTTATGAAAAAAAGTTTGGTAAAAATGATTCTGATCTTGTGATTAAGAAGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAAGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG
mRNA sequence
ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAACGAAGCTATAGATAGTTTGAGGTTTCTTGGAGATGTTGGCGACACCGATTTACATGTTCTAGAGCGTATTCTCCCACATTGCACCGTTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGCTGTGGAAAAACTTTTATGAAAAAAAGTTTGGTAAAAATGATTCTGATCTTGTGATTAAGAAGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAAGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG
Coding sequence (CDS)
ATGTGTGAAGAAGTAAGTAAAATAGCTTCATCCTTCCTTAGTCATGATTCTATTAACGAAGCTATAGATAGTTTGAGGTTTCTTGGAGATGTTGGCGACACCGATTTACATGTTCTAGAGCGTATTCTCCCACATTGCACCGTTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGAGATCTCACACCTGTAACTGACAAGCTGTGGAAAAACTTTTATGAAAAAAAGTTTGGTAAAAATGATTCTGATCTTGTGATTAAGAAGATGAAATATAAGAAAGAGTCATTTAAATGGAAGCAATTATATGAGGCAAAGATGGAGGCATTAGAAAAGAAGGCAATGGAAATTGAGGCTCGATATAAACAAAATTGTCAAAAGGAAAACGCTCGAAAACAAAGTCGTAAAATAATATTTTGTGAGGACGTTTCTTCTTCGAACAATAAGAAAAGGAGATCTGAAGGAACTATCAAGTCTGAATGTAATACCACAGAGAGTAAGATTTTGAAGAAGCCAAATAGAGAAGCACAAATGTGTCAAGTTTCATCTGGAGGGACAACCAAACCTGGACACCGTACTAAGCAAAGCAAGATATTGAAAAAGGCAAAGAGAGAAGCGTTGCAGTGTATAGAGACGAAGAATGTAATAGCTTTTCGAAGAAATGCAATGCAGAAATAG
Protein sequence
MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Homology
BLAST of Bhi01G000715 vs. TAIR 10
Match:
AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )
HSP 1 Score: 118.2 bits (295), Expect = 8.3e-27
Identity = 77/210 (36.67%), Postives = 118/210 (56.19%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+ +AID+++++G VG D +LE+IL HCT++QL HIE+++ DL+P+TDK WK FY+K
Sbjct: 18 VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77
Query: 78 KFGKNDSDLVIKKMKYKK-ESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSR 137
+G+ D +I+ +++ K FKW+ LYE K+ A+++K E+ R K+ + EN RKQSR
Sbjct: 78 HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137
Query: 138 KIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQ 197
+ C S + KR G S N GH +
Sbjct: 138 QTKVC---SKAPPSKRPFWGNSASGYNL--------------------------GH--VK 196
Query: 198 SKILKKAKREALQCIETKNVIAFRRNAMQK 227
S I+KKAK + L+ E KN+ A +RN +QK
Sbjct: 198 SNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196
BLAST of Bhi01G000715 vs. TAIR 10
Match:
AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )
HSP 1 Score: 118.2 bits (295), Expect = 8.3e-27
Identity = 77/210 (36.67%), Postives = 118/210 (56.19%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+ +AID+++++G VG D +LE+IL HCT++QL HIE+++ DL+P+TDK WK FY+K
Sbjct: 18 VRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPITDKFWKGFYKK 77
Query: 78 KFGKNDSDLVIKKMKYKK-ESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSR 137
+G+ D +I+ +++ K FKW+ LYE K+ A+++K E+ R K+ + EN RKQSR
Sbjct: 78 HYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERYKDENERKQSR 137
Query: 138 KIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQ 197
+ C S + KR G S N GH +
Sbjct: 138 QTKVC---SKAPPSKRPFWGNSASGYNL--------------------------GH--VK 196
Query: 198 SKILKKAKREALQCIETKNVIAFRRNAMQK 227
S I+KKAK + L+ E KN+ A +RN +QK
Sbjct: 198 SNIMKKAKIDLLKSQEVKNLTAIKRNTIQK 196
BLAST of Bhi01G000715 vs. NCBI nr
Match:
XP_038885873.1 (uncharacterized protein LOC120076176 [Benincasa hispida])
HSP 1 Score: 436.0 bits (1120), Expect = 1.9e-118
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query: 1 MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60
MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG
Sbjct: 1 MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60
Query: 61 RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA
Sbjct: 61 RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
Query: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180
RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180
Query: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 227
QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Sbjct: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226
BLAST of Bhi01G000715 vs. NCBI nr
Match:
XP_038885879.1 (uncharacterized protein LOC120076185 [Benincasa hispida])
HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 215/226 (95.13%), Postives = 220/226 (97.35%), Query Frame = 0
Query: 1 MCEEVSKIASSFLSHDSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKG 60
MCEEVSKIASSFLSHDSINEAID+LRFL DVGDTDLHVL+RILPHCTVDQL+HIENSSKG
Sbjct: 1 MCEEVSKIASSFLSHDSINEAIDNLRFLRDVGDTDLHVLKRILPHCTVDQLLHIENSSKG 60
Query: 61 RDLTPVTDKLWKNFYEKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
RDLT VTDKLWKNFY KKFGKND DL I++MKYKKESFKWKQLYEAKMEALEKKAMEIEA
Sbjct: 61 RDLTLVTDKLWKNFYVKKFGKNDFDLAIERMKYKKESFKWKQLYEAKMEALEKKAMEIEA 120
Query: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMC 180
RYKQNCQKENARKQSRKIIFCEDVSSSNNKK RSEGTIKSECNTTESKILKKPNREAQMC
Sbjct: 121 RYKQNCQKENARKQSRKIIFCEDVSSSNNKKGRSEGTIKSECNTTESKILKKPNREAQMC 180
Query: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 227
QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK
Sbjct: 181 QVSSGGTTKPGHRTKQSKILKKAKREALQCIETKNVIAFRRNAMQK 226
BLAST of Bhi01G000715 vs. NCBI nr
Match:
XP_022979571.1 (uncharacterized protein LOC111479252 [Cucurbita maxima])
HSP 1 Score: 229.9 bits (585), Expect = 2.1e-56
Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 0
Query: 16 DSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFY 75
+ +N+AIDSLRFLGDVG TDL+ LE ILPHCTVDQLMHIEN SKGRDLTP+T+KLWK FY
Sbjct: 3 EQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFY 62
Query: 76 EKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
E+KFGK+D + V+ +MK+ KESF+WKQ+YE K++ LE KA+E+E RY +NCQ E ARKQS
Sbjct: 63 ERKFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQS 122
Query: 136 RKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
R++ CE +S S SK+LKKP ++CQVSS K +
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVHTKVCQVSSANNNKRSYLGG 182
Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
SKILKKA++E LQ IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETLQSIETKNLIAFRRNAIQK 192
BLAST of Bhi01G000715 vs. NCBI nr
Match:
KAG6582092.1 (hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 224.6 bits (571), Expect = 8.9e-55
Identity = 126/209 (60.29%), Postives = 154/209 (73.68%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+N+AIDSLRFLGDVG+TDL+ LERILPHCTV+QLM IEN SKGRDLTPVT+KLWK FYE+
Sbjct: 5 VNKAIDSLRFLGDVGETDLNFLERILPHCTVEQLMRIENCSKGRDLTPVTNKLWKTFYER 64
Query: 78 KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
KFGK+ + V++ MK+ KESFKWKQ+YE K++ LE+KA+EIE RY QNC+ E ARKQSR+
Sbjct: 65 KFGKDAVNGVLEMMKH-KESFKWKQMYEQKIKELEEKAVEIEKRYIQNCKNEKARKQSRQ 124
Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
+ CE +S S SK+LKKP ++CQVSS K + S
Sbjct: 125 VKICE-ISPS-------------------SKVLKKPKVHTKICQVSSANNNKRSYVGGTS 184
Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
KILKKA++E LQ IETKN IAFRRNA+QK
Sbjct: 185 KILKKARKETLQSIETKNAIAFRRNAVQK 192
BLAST of Bhi01G000715 vs. NCBI nr
Match:
KAG6582214.1 (hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 222.2 bits (565), Expect = 4.4e-54
Identity = 124/211 (58.77%), Postives = 154/211 (72.99%), Query Frame = 0
Query: 16 DSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFY 75
+ +N+AIDSLRFLGDVG DL+ LE ILPHCTVDQLMHIEN SKGRDLTPVT+KLWK FY
Sbjct: 3 EQVNKAIDSLRFLGDVGQIDLNFLEHILPHCTVDQLMHIENCSKGRDLTPVTNKLWKTFY 62
Query: 76 EKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
EKKFG++ + V+++MK+ KESF+WKQ+YE KM+ LE+KA+EIE RY QNC+ E RKQS
Sbjct: 63 EKKFGEDGVNGVLERMKH-KESFRWKQMYELKMKELEEKAVEIEKRYIQNCRNEKNRKQS 122
Query: 136 RKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
R++ CE +S S SK+LKKP + ++CQVSS K +
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVQTKICQVSSATNNKRSYGGG 182
Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
SKILKKA++E Q IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETRQSIETKNLIAFRRNAIQK 192
BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match:
A0A6J1IR58 (uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252 PE=4 SV=1)
HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 0
Query: 16 DSINEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFY 75
+ +N+AIDSLRFLGDVG TDL+ LE ILPHCTVDQLMHIEN SKGRDLTP+T+KLWK FY
Sbjct: 3 EQVNKAIDSLRFLGDVGQTDLNFLEHILPHCTVDQLMHIENCSKGRDLTPITNKLWKTFY 62
Query: 76 EKKFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQS 135
E+KFGK+D + V+ +MK+ KESF+WKQ+YE K++ LE KA+E+E RY +NCQ E ARKQS
Sbjct: 63 ERKFGKDDVNCVVDRMKH-KESFRWKQMYELKIKELEDKAVEVEKRYIRNCQNEKARKQS 122
Query: 136 RKIIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTK 195
R++ CE +S S SK+LKKP ++CQVSS K +
Sbjct: 123 RQVKICE-ISPS-------------------SKVLKKPKVHTKVCQVSSANNNKRSYLGG 182
Query: 196 QSKILKKAKREALQCIETKNVIAFRRNAMQK 227
SKILKKA++E LQ IETKN+IAFRRNA+QK
Sbjct: 183 TSKILKKARKETLQSIETKNLIAFRRNAIQK 192
BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match:
A0A6J1ITM2 (uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243 PE=4 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 4.7e-54
Identity = 126/209 (60.29%), Postives = 151/209 (72.25%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+N+AIDSLRFLGDVG TDL+ LE ILPHCTV+QLM IENSSKGRDLTPVT+KLWK FYE+
Sbjct: 5 VNKAIDSLRFLGDVGQTDLNFLEHILPHCTVEQLMRIENSSKGRDLTPVTNKLWKTFYER 64
Query: 78 KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
KFGK+ + V++ MK+ KESFKWKQ+YE K++ LE+KA+EIE RY QNCQ E ARKQSR+
Sbjct: 65 KFGKDAVNGVLEMMKH-KESFKWKQMYELKIKELEEKAVEIEKRYIQNCQNEKARKQSRQ 124
Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
+ CE +S S SK+LKK + CQVSS K + S
Sbjct: 125 VKICE-ISPS-------------------SKVLKKSKVHTKFCQVSSAHNDKRSYLGGTS 184
Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
KILKKA++E LQ IETKNVIAFRRN +QK
Sbjct: 185 KILKKARKETLQSIETKNVIAFRRNTVQK 192
BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match:
A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+N+AID++RFLGDVG+TD+H+LERILPHCTVDQLMH+E SS+GRDLTPVTDKLWK FYE+
Sbjct: 15 VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74
Query: 78 KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
+FGK + VI++M+ K+ +F+W QLYEAKM+ +EK + R KQ+ KENARKQSR+
Sbjct: 75 QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134
Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
I C V S+NK RS G N +K +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193
Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
KILKKAK E LQ E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193
BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match:
A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+N+AID++RFLGDVG+TD+H+LERILPHCTVDQLMH+E SS+GRDLTPVTDKLWK FYE+
Sbjct: 15 VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74
Query: 78 KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
+FGK + VI++M+ K+ +F+W QLYEAKM+ +EK + R KQ+ KENARKQSR+
Sbjct: 75 QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134
Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
I C V S+NK RS G N +K +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193
Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
KILKKAK E LQ E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193
BLAST of Bhi01G000715 vs. ExPASy TrEMBL
Match:
A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)
HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 109/209 (52.15%), Postives = 138/209 (66.03%), Query Frame = 0
Query: 18 INEAIDSLRFLGDVGDTDLHVLERILPHCTVDQLMHIENSSKGRDLTPVTDKLWKNFYEK 77
+N+AID++RFLGDVG+TD+H+LERILPHCTVDQLMH+E SS+GRDLTPVTDKLWK FYE+
Sbjct: 15 VNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYER 74
Query: 78 KFGKNDSDLVIKKMKYKKESFKWKQLYEAKMEALEKKAMEIEARYKQNCQKENARKQSRK 137
+FGK + VI++M+ K+ +F+W QLYEAKM+ +EK + R KQ+ KENARKQSR+
Sbjct: 75 QFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIKQSYLKENARKQSRQ 134
Query: 138 IIFCEDVSSSNNKKRRSEGTIKSECNTTESKILKKPNREAQMCQVSSGGTTKPGHRTKQS 197
I C V S+NK RS G N +K +
Sbjct: 135 IQICSKVPPSSNK--RSFGGSGYGYNVANTK----------------------------N 193
Query: 198 KILKKAKREALQCIETKNVIAFRRNAMQK 227
KILKKAK E LQ E KN+ A+RRNA+QK
Sbjct: 195 KILKKAKIEVLQSQEMKNIKAWRRNAVQK 193
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT2G42780.1 | 8.3e-27 | 36.67 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti... | [more] |
AT2G42780.2 | 8.3e-27 | 36.67 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_038885873.1 | 1.9e-118 | 100.00 | uncharacterized protein LOC120076176 [Benincasa hispida] | [more] |
XP_038885879.1 | 1.3e-111 | 95.13 | uncharacterized protein LOC120076185 [Benincasa hispida] | [more] |
XP_022979571.1 | 2.1e-56 | 59.24 | uncharacterized protein LOC111479252 [Cucurbita maxima] | [more] |
KAG6582092.1 | 8.9e-55 | 60.29 | hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6582214.1 | 4.4e-54 | 58.77 | hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1IR58 | 1.0e-56 | 59.24 | uncharacterized protein LOC111479252 OS=Cucurbita maxima OX=3661 GN=LOC111479252... | [more] |
A0A6J1ITM2 | 4.7e-54 | 60.29 | uncharacterized protein LOC111479243 OS=Cucurbita maxima OX=3661 GN=LOC111479243... | [more] |
A0A5D3BGR1 | 1.3e-43 | 52.15 | Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ... | [more] |
A0A1S4E1U0 | 1.3e-43 | 52.15 | transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36... | [more] |
A0A1S3C4D6 | 1.3e-43 | 52.15 | transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36... | [more] |