CsaV3_6G001320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G001320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	thylakoid lumenal 15 kDa protein 1, chloroplastic
Location	chr6: 861404 .. 863652 (+)
RNA-Seq Expression	CsaV3_6G001320
Synteny	CsaV3_6G001320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGAAGTAAGATACGAACAGCTGCACTCAAACAAAACTCATAATCCTTTTCCAGATTATCCAATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTCCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTAACCTCCCCTTCTCCCTTCCCACTCCCATTTTCTTCTCCTTTATCTTCCAATGCTTTCATTTTACCCACTATATGAAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGTTCATTTCCTCATTTTCATTCTCATTTCTCTATTGTATTGTACTCTACTGTATGATTGATTTTTGGCTATTAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGGTTTCAACCGAAGTTTCATTATTTCTATTGTTTCTACTTGTACTACAGTAATATGTGGTTGTGACATTGCTTTTATTTTTCTGTTTCTTTTGTATTAGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGTTTAACTCATTTTAATCAACTGCATACTCTTATAATTCAGGATTTTCTATCCAGTTAATGCTGACTTCTATTATTTCTTCCATTGTCTAATTGTTAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGTGGTGATTGTTTGATATGTGTGCAATTAAATGCTTCTTTGTTTAATCTTTAGTTTGCCCCTTTTCAGATTTTCAAATTTGAATGATTGTATTATTATATACATAACAAGTTAGTTAGGACTGGAGGTCAAATTTTGCAATCTCAGTCTTGAATGTTAAAAAATTTGCTCAATTACGATAGGAAACTACTTAGCAAAAAGTATTCATGTGATACAACAACCACGAACTTTGTATGCAGTTTGAGATGCAGAGTAACCTACAGTTTTTATCTGCGGTTTTACATGCAAGCGCTGTGCTTTGATGTTAGAAAACAGTGAAGTTGTAACTTTATACTGAATGGTTGTTTTTTTCTGCTTTGAGCAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGGTATGGAAACCCAACATCTATTTTGCTTTTAGTATCTCATCGGGGATCCTCTTTTTTTTTTTATCCGTTTACTCTCTCTCCCCCCACGTTCAATTAATACTTTATATATTTTCCAAAGGTACTCTATACATATTTGAAAGCTTCTATTAGTTCATTATAAGACCTAAAAGTCGAGTTTAGGAGATTTGAAAGGCGAGAATGGCCAAGATTGATCTTAGATACACAAATAGAATCTGATTCTCTTTTTCATAGTATATTTCTTGTAAACCCAACATTTATGTGCTTTTAGTATCTCATTGGGGATTCTCTCATATCCATAATTATTTTAGATGCCATGAGGCATTAACATAGGTTATTATTCCAACCTCTCTATGCTTCAAAAGAAATTTGACTTTTAGGCATTTAGCTGAAACTAATTTTTGTCAGCAATGTTCTTAGACGAAAGAGTAATAGGAAAATGCAATTCAACTAACAATGAATATAATTTTCTGAAAACTAACAATGGGGTGGTTGTACGAAGAAATACTTGTGCATAATTTACCTCATAATGGCAGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGTAAAAACAAATTCTTGTGTTTATTAGGTTTGACTGTAAATGGTTCATGATAAATAGAACAGGATACTTATTCATTTTTGTCTACAGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGAGACTCAAATTAGATGGCAAGCTATTGAACTACAAGAATCGTACAGATCAACTTAAAAATGTATAAAGTTTTCAATAACAATATCAGTATATCCAATCCAATGAGTT

mRNA sequence

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTCCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Coding sequence (CDS)

ATGGGGGTTCGGTCGGTGGTGACATTATCGGTTATCCAATTCGAAAACGAAAACAAACTTTTGAATTTCAGCTTTCCGGAAATGGCTCTGCTCAATGCTTCATTATGTTGTTCCACTCCCAAAATTCCTTCAAGATCTCACCTCCTTCTTCCTCCCTCCATTTCCCTCCATTCTACTTCTCAGGTATTCAACCAACAACTTCAAGCTACAAGGAATTTCGTTCTTTCCCTTGGACAACCCACTTTCCTCGCTTTCGTTTCTGCCTCTTTGTTCCTCGCCGATCCTGCCCTAGCTTTTAAGGGCGGAGGTCCTTACGGAGCTGGGGTCACTAGAGGTCAGGATCTCTCTGGGAAAGATTTCAGTGGGAAGACCTTAATCAAGCAAGATTTCAAAACGTCTATTTTACGGCAAGCTAATTTTAAAGGTGCCAACTTATTAGGTGCTAGCTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCAGATGCTGATCTCAGAGGTGCAGATTTTTCTCTTGCCAATGTTACCAAGGCAAATTTAAGCAATGCCAACCTTGAAGGTGCACTGGCCACGGGAAATACCTCTTTCCGTGGTTCAACAATAAACGGCGCTGACTTCACTGACGTGCCATTGAGAGAGGATCAGCGGGAATACCTTTGCAAAGTTGCAGATGGGGTAAACCCAACTACTGGAAATGCAACCCGAGAGACCTTGCTCTGTGATTGA

Protein sequence

MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD*

Homology

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BLAST of CsaV3_6G001320 vs. NCBI nr
Match: XP_004138481.2 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 hypothetical protein Csa_005512 [Cucumis sativus])

HSP 1 Score: 468.0 bits (1203), Expect = 4.9e-128
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTS 60
           MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTS
Sbjct: 1   MGVRSVVTLSVIQFENENKLLNFSFPEMALLNASLCCSTPKIPSRSHLLLPPSISLHSTS 60

Query: 61  QVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDF 120
           QVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDF
Sbjct: 61  QVFNQQLQATRNFVLSLGQPTFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDF 120

Query: 121 SGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANL 180
           SGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANL
Sbjct: 121 SGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANL 180

Query: 181 SNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 240
           SNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC
Sbjct: 181 SNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 240

Query: 241 D 242
           D
Sbjct: 241 D 241

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BLAST of CsaV3_6G001320 vs. NCBI nr
Match: XP_008441390.1 (PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA0041434.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa] >TYK24308.1 thylakoid lumenal 15 kDa protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 1.8e-106
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSIS--LHSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

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BLAST of CsaV3_6G001320 vs. NCBI nr
Match: XP_022133545.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 362.8 bits (930), Expect = 2.2e-96
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQ----PTFL 87
           MALLNASLCCST +IP   HL LPPSIS H T  V  QQL+A+RN +LS+G+     TFL
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSISAHPTPPVLKQQLEASRNLILSVGESASKATFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTI G
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIEG 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           ADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

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BLAST of CsaV3_6G001320 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 361.3 bits (926), Expect = 6.5e-96
Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQ----PTFL 87
           MALLNASLC ST +IPSR HL LPPS+S  S  QV   Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS ING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

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BLAST of CsaV3_6G001320 vs. NCBI nr
Match: XP_023552471.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.9 bits (925), Expect = 8.5e-96
Identity = 190/218 (87.16%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQ----PTFL 87
           MALLNASLC ST +IPSR HL LPPSIS  S  QV   Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSISALSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS ING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

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BLAST of CsaV3_6G001320 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 279.6 bits (714), Expect = 3.3e-74
Identity = 157/224 (70.09%), Postives = 171/224 (76.34%), Query Frame = 0


Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 209
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 210 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

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BLAST of CsaV3_6G001320 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 0


Query: 115 LSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADFSLAN 174
           L G+DFSGK+L    F  + L  +NF  A+L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 175 VTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 234
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 235 RETLLC 241
           RE+L C
Sbjct: 174 RESLGC 178

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BLAST of CsaV3_6G001320 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

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BLAST of CsaV3_6G001320 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.9e-08
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 111 RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 170
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 171 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 218
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

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BLAST of CsaV3_6G001320 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.9e-07
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 112 GQDLSGKDFSGKTL---------IKQDFK-------TSILRQANFKGANLLGASFFDADL 171
           G DL G D SG TL         ++Q+ K        +IL +A+ +GAN+ G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 172 TGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPL 212
           + A+L +A+LR  D     + KA+LS ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

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BLAST of CsaV3_6G001320 vs. ExPASy TrEMBL
Match: A0A0A0KA71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 8.2e-113
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 87
           MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS
Sbjct: 1   MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQPTFLAFVS 60

Query: 88  ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 147
           ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG
Sbjct: 61  ASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLG 120

Query: 148 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 207
           ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT
Sbjct: 121 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFT 180

Query: 208 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           DVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 DVPLREDQREYLCKVADGVNPTTGNATRETLLCD 214

[Close]

BLAST of CsaV3_6G001320 vs. ExPASy TrEMBL
Match: A0A5A7TDC5 (Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00790 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.8e-107
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSIS--LHSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of CsaV3_6G001320 vs. ExPASy TrEMBL
Match: A0A1S3B3C6 (thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485520 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.8e-107
Identity = 206/216 (95.37%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSIS--LHSTSQVFNQQLQATRNFVLSLGQPTFLAF 87
           MALLNASLCCSTPKI SRSHLLLPPSIS   HSTSQVFNQQL+ATRN VLSLGQPTFL F
Sbjct: 1   MALLNASLCCSTPKIHSRSHLLLPPSISPGPHSTSQVFNQQLEATRNLVLSLGQPTFLVF 60

Query: 88  VSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANL 147
           +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA L
Sbjct: 61  ISASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKL 120

Query: 148 LGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGAD 207
           LGASFFDADLTGADLSDADLRGADFSLANVTKANL+NANLEGALATGNTSFRGSTINGAD
Sbjct: 121 LGASFFDADLTGADLSDADLRGADFSLANVTKANLTNANLEGALATGNTSFRGSTINGAD 180

Query: 208 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD
Sbjct: 181 FTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 216

[Close]

BLAST of CsaV3_6G001320 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.1e-96
Identity = 189/218 (86.70%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQ----PTFL 87
           MALLNASLCCST +IP   HL LPPSIS H T  V  QQL+A+RN +LS+G+     TFL
Sbjct: 1   MALLNASLCCSTSRIPPAPHLHLPPSISAHPTPPVLKQQLEASRNLILSVGESASKATFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTI G
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTIEG 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           ADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of CsaV3_6G001320 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 3.1e-96
Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 28  MALLNASLCCSTPKIPSRSHLLLPPSISLHSTSQVFNQQLQATRNFVLSLGQ----PTFL 87
           MALLNASLC ST +IPSR HL LPPS+S  S  QV   Q++ATRNFVLS+G+     +FL
Sbjct: 1   MALLNASLCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKASFL 60

Query: 88  AFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGA 147
           A +SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANFKGA
Sbjct: 61  ALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGA 120

Query: 148 NLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTING 207
            LLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS ING
Sbjct: 121 KLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSIING 180

Query: 208 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC+
Sbjct: 181 ADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of CsaV3_6G001320 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-75
Identity = 157/224 (70.09%), Postives = 171/224 (76.34%), Query Frame = 0


Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 209
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

Query: 210 GSTINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCD 242
           GS I GADFTDVPLR+DQR YLCKVADGVN TTGNATR+TLLC+
Sbjct: 184 GSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of CsaV3_6G001320 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-54
Identity = 125/187 (66.84%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 30  LLNASL--CCSTPKIPSRSHLLLPPSISLHSTSQVFNQQ------LQATRNFVLSLGQP- 89
           L N SL  CC+  + PS   L  P S S H   +    Q          R+ V SLG+  
Sbjct: 4   LSNVSLFSCCNISQKPS---LFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEV 63

Query: 90  ---TFLAFVSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQ 149
              +  A VSASLF  DPALAFKGGGPYG GVTRGQDLSGKDFSG+TLI+QDFKTSILRQ
Sbjct: 64  SKRSLFALVSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQ 123

Query: 150 ANFKGANLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFR 205
           ANFKGA LLGASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+
Sbjct: 124 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFK 183

[Close]

BLAST of CsaV3_6G001320 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 101 GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 160

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 161 FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 220

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 221 CKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of CsaV3_6G001320 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-11
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 103 GPYGAGVTR---GQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGAD 162
           G +G G        DLS    S +   + +F ++ +R+++F G+   GA    A    A+
Sbjct: 27  GEFGIGSAAQYGSADLSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKAN 86

Query: 163 LSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSTINGADFTDVPLREDQREYL 222
            S ADL         + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ L
Sbjct: 87  FSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQAL 146

Query: 223 CKVADGVNPTTGNATRETLLC 241
           CK A G NP TG  TR++L C
Sbjct: 147 CKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of CsaV3_6G001320 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-09
Identity = 43/111 (38.74%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 111 RGQDLSGKDFSGKTLIKQDFKTSILRQANFKGANLLGASFFDADLTGADLSDADLRGADF 170
           R  D  G  F    L + +F ++ LR A   G NL  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 171 SLANVTKANLSNANLEGALATG----NTSFRGSTINGADFTDVPLREDQRE 218
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of CsaV3_6G001320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138481.2	4.9e-128	100.00	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis sativus] >KGN45739.2 ...	[more]
XP_008441390.1	1.8e-106	95.37	PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucumis melo] >KAA...	[more]
XP_022133545.1	2.2e-96	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Momordica charanti...	[more]
XP_022955559.1	6.5e-96	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata...	[more]
XP_023552471.1	8.5e-96	87.16	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G001320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	3.3e-74	70.09	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	1.3e-14	43.65	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	1.3e-09	33.33	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	6.9e-08	38.74	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	5.9e-07	37.93	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of CsaV3_6G001320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA71	8.2e-113	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008700 PE=4 SV=1	[more]
A0A5A7TDC5	8.8e-107	95.37	Thylakoid lumenal 15 kDa protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B3C6	8.8e-107	95.37	thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1BVJ8	1.1e-96	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charan...	[more]
A0A6J1GWM1	3.1e-96	86.70	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]

BLAST of CsaV3_6G001320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	2.3e-75	70.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	1.3e-54	66.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	9.0e-11	33.33	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	9.0e-11	33.33	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	4.9e-09	38.74	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.160.20.80		coord: 98..241 e-value: 3.7E-47 score: 161.1
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 110..212
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 133..171 e-value: 1.5E-12 score: 46.9
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 53..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G001320.1	CsaV3_6G001320.1	mRNA