CsaV3_5G018770 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G018770
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr5: 14316594 .. 14316803 (-)
RNA-Seq ExpressionCsaV3_5G018770
SyntenyCsaV3_5G018770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCCAGACACAACTTCATAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCATTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAG

mRNA sequence

TTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCCAGACACAACTTCATAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCATTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAG

Coding sequence (CDS)

TTTGGAATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCCAGACACAACTTCATAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCATTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAG

Protein sequence

FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYK
Homology
BLAST of CsaV3_5G018770 vs. NCBI nr
Match: KAE8648316.1 (hypothetical protein Csa_004655, partial [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.0e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
          FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY
Sbjct: 1  FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60

Query: 61 MERPTTMHYK 71
          MERPTTMHYK
Sbjct: 61 MERPTTMHYK 70

BLAST of CsaV3_5G018770 vs. NCBI nr
Match: KAE8648201.1 (hypothetical protein Csa_018467, partial [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
          FGMADCNATKYPMEP+ QLHKDTEGAPIDATEYRSI+GCLRYLLNTRPDLSYVVGMASRY
Sbjct: 1  FGMADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRY 60

Query: 61 MERPTTMHYK 71
          MERPTTMHYK
Sbjct: 61 MERPTTMHYK 70

BLAST of CsaV3_5G018770 vs. NCBI nr
Match: XP_031742485.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1   FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
           FGMADCNATKYPMEP+ QLHKDTEGAPIDATEYRSI+GCLRYLLNTRPDLSY VGMASRY
Sbjct: 42  FGMADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 101

Query: 61  MERPTTMHYK 71
           MERPTTMHYK
Sbjct: 102 MERPTTMHYK 111

BLAST of CsaV3_5G018770 vs. NCBI nr
Match: XP_031742070.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-32
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1   FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
           FGMADCNATKYPMEP+ QLHKDTEGAPIDATEYRSI+GCLRYLLNTRPDLSY VGMASRY
Sbjct: 37  FGMADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 96

Query: 61  MERPTTMHYK 71
           MERPTTMHYK
Sbjct: 97  MERPTTMHYK 106

BLAST of CsaV3_5G018770 vs. NCBI nr
Match: XP_031741734.1 (uncharacterized protein LOC116403928 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1   FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
           FGMADCNATKYPMEP+ QLHK+T+GAPIDATEYRSI+GCLRYLLNTRPDLSY VGMASRY
Sbjct: 142 FGMADCNATKYPMEPKAQLHKETKGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRY 201

Query: 61  MERPTTMHYK 71
           +ERPTTMHYK
Sbjct: 202 IERPTTMHYK 211

BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.8e-08
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 8    ATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYMERPTTM 67
            AT     P+  LH  T+  P D TEYR I+G L+YL  TRPDLSY V   S+YM  PT  
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDD 1264

Query: 68   HY 70
            H+
Sbjct: 1265 HW 1264

BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.4e-07
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 0

Query: 12   PMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYMERPTTMH 69
            PM P  +L   +     D TEYR I+G L+YL  TRPD+SY V   S++M  PT  H
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEH 1280

BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-06
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 2   GMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYM 61
           GM DC     P+  +      T   P D +++RSI+G L+YL  TRPD+SY V +  + M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 62  ERPT 66
             PT
Sbjct: 130 HEPT 132

BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-04
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0

Query: 9   TKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNT-RPDLSYVVGMASRYMERPTTM 68
           T+ P+     L + T     D T Y+SI+G L +  NT RPD+SY V + SR++  P  +
Sbjct: 159 TQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAI 218

BLAST of CsaV3_5G018770 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 43.9 bits (102), Expect = 8.7e-04
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 1    FGMADCNATKYPMEPQTQLHKDTEGAPIDA-TEYRSIIGCLRY-LLNTRPDLSYVVGMAS 60
            F M +CNA   P+   ++++ +   +  D  T  RS+IGCL Y +L TRPDL+  V + S
Sbjct: 1150 FNMENCNAVSTPL--PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILS 1209

Query: 61   RYMER 64
            RY  +
Sbjct: 1210 RYSSK 1212

BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1    FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
            FGM  CN T  PMEP++ LHKD +G PIDATEYR +IGCLRYLL+TRPDLSY VG+ASR+
Sbjct: 1171 FGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRF 1230

Query: 61   MERPTTMHYK 71
            MERPTTMH K
Sbjct: 1231 MERPTTMHLK 1240

BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1    FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
            FGM  CN T  PMEP++ LHKD +G PIDATEYR +IGCLRYLL+TRPDLSY VG+ASR+
Sbjct: 1171 FGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRF 1230

Query: 61   MERPTTMHYK 71
            MERPTTMH K
Sbjct: 1231 MERPTTMHLK 1240

BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 52/70 (74.29%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1    FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
            FGM  CN T  PMEP++ LHKD +G PIDATEYR +IGCLRYLL+TRPDLSY VG+ASR+
Sbjct: 1171 FGMQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRF 1230

Query: 61   MERPTTMHYK 71
            MERPTTMH K
Sbjct: 1231 MERPTTMHLK 1240

BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1   FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
           FGM DCN TK PMEP++QL+KD EG P+DATEYR  IGCLRYL++TRPDL Y VG+ASR+
Sbjct: 200 FGMFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRFIGCLRYLVHTRPDLLYAVGVASRF 259

Query: 61  MERPTTMHYK 71
           MERPT MH+K
Sbjct: 260 MERPTVMHHK 269

BLAST of CsaV3_5G018770 vs. ExPASy TrEMBL
Match: A0A6G1EJC3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014570 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 1   FGMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRY 60
           FGM++CN TK+PME +TQLHKD EG P DA EYR IIGCLRYLL+TRPD+S+ VG+ASR+
Sbjct: 63  FGMSECNPTKFPMELRTQLHKDGEGHPADAMEYRRIIGCLRYLLHTRPDMSFAVGVASRF 122

Query: 61  MERPTTMHYK 71
           +ERPT MH+K
Sbjct: 123 IERPTVMHHK 132

BLAST of CsaV3_5G018770 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 24/67 (35.82%), Postives = 34/67 (50.75%), Query Frame = 0

Query: 2   GMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYM 61
           G+  C  +  PM+P       + G  +DA  YR +IG L YL  TR D+S+ V   S++ 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

Query: 62  ERPTTMH 69
           E P   H
Sbjct: 407 EAPRLAH 413

BLAST of CsaV3_5G018770 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 2.3e-07
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 2   GMADCNATKYPMEPQTQLHKDTEGAPIDATEYRSIIGCLRYLLNTRPDLSYVVGMASRYM 61
           GM DC     P+  +      T   P D +++RSI+G L+YL  TRPD+SY V +  + M
Sbjct: 70  GMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRM 129

Query: 62  ERPT 66
             PT
Sbjct: 130 HEPT 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648316.11.0e-33100.00hypothetical protein Csa_004655, partial [Cucumis sativus][more]
KAE8648201.11.5e-3295.71hypothetical protein Csa_018467, partial [Cucumis sativus][more]
XP_031742485.14.3e-3294.29secreted RxLR effector protein 161-like [Cucumis sativus][more]
XP_031742070.14.3e-3294.29secreted RxLR effector protein 161-like [Cucumis sativus][more]
XP_031741734.11.0e-3090.00uncharacterized protein LOC116403928 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q9ZT945.8e-0850.00Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW26.4e-0745.61Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P925193.2e-0639.06Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P256006.7e-0437.70Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
P041468.7e-0438.46Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
Q0J8A61.3e-2374.29Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE... [more]
B8BDZ61.3e-2374.29Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4... [more]
A0A0P0XB911.3e-2374.29Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE... [more]
A0A5K0VEQ61.8e-2372.86Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym... [more]
A0A6G1EJC36.7e-2371.43Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyerian... [more]
Match NameE-valueIdentityDescription
AT4G23160.12.3e-0735.82cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.12.3e-0739.06DNA/RNA polymerases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G018770.1CsaV3_5G018770.1mRNA