CsaV3_6G039010 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G039010
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type domain-containing protein
Location	chr6: 22363926 .. 22367461 (-)
RNA-Seq Expression	CsaV3_6G039010
Synteny	CsaV3_6G039010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAGTGATTTCCAAGAAATAAATTTATACGACCGAATGAAGGGAAAGAAAATCCCCTTTGGCGGTGAAGATAATGTACGCAACAAAGTTTGAATATAAAAAAGATAAATAAGTAAAAACGAGCCCTAGATTTTGTATAAAAGGGGACTTGCAATTCACAACTTGTAAATTTTCTCCTCAAGAACTCTTAGATCGTGAGTAGAGAATATTCTCGAGCATCGTTTCTTTTCTTCTGGTTCAGAATAATTCCCTTCAGCATCTCTGTTCATTTCAAACTTTTGATTGATTTTGTGCTGAACAACAAACTATTTGGGGTTCTTGTGTAATTTAAGAAGAGCGAGGAAGATCGGAAGGACAAACCCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCGAATTGACAGATGCGGTTCAAGGACTAGTTCTTTGCGATCAGGTTTTATTATTTATCTATTCATTTTCGAAGTTGATGTACTTTTACGCGCTTTCTTTATTCAAGAGAATCTTGGGGGTGTGTGAGAAATGGTTGTTTTCGATTTGTGTTGAGAGTTCTTATTGATTTAGTCTTGGTGTCATTTGCTTTTCAAGATTTGCGTTTCTTGGGGGCTAATTAAATAAGTCAGAGATTGTTGGGTTAGTCTTGTTTTTTTCATCATCGAGATTATGGACGTCGGGGTGATTGTTTTCTGCGTTTGGATATCTAGGGGGAATATGGTTCAATCGAATTGAATTGATTTTTGTGGTTGGTTGTATGGGTTTGGGGAATCATAATAATCAGAAGCTATTGTTTGTGTTCACCCGTTTGTCAGTAATGGTTGTTTTTCTTTCGCGAAATTGGTTGGTCGCCTGGGAATGAATTTCTTTATTCTTTAAAGAAGATAGTTCTTTCCTCTCTTTGAGTTCGAGTTGCATAGCCATGATTTTGTCTAAGTGTCTGTTTTCTAATTTGCTGGACTTGTATGTTTAGTTGGAAATGTAGATCTTTCTTGCTTTTGGTTCAGAAGAATTCTTTAGTCTCTCTCTCTCTTTTTTATAAGTTTTGATTTGTGCTGAACAACTATTTGGGTTCTGTGTTTTTTAGAGCGATAAAGATCGGAGGGCTATGGCAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCTGTTCAAGAACAAGTAACTTGCGACCAGGTTTTATCTATCTATTCATTTTCGAAGTCGATCTACTTTCGCGCACTTTCTTTTTCCTAGAGAATCAAGGGCGTAAAACTCTGCTAGGAAATGGTTGTCTACAATTTGTTTTGATAGTTCTTATTGGAAATATAGTGTTCTCAAATCTGAAATCGTTAATCTAGTTTTGTTGCCCTTTGTTTTTCAAGATCTGTAACCGTTGGGCTAATCTTGTTTCTTTCATTGTCAAGATTACGGATATCAGGCCCTGCGATATAATATCTAGGGAGAATATGGTTTATTTGAATTGAATTTGAGATTGGTTGTATGGCTAGATACTATTGCTTATGTTCATCTTGTTTTTCTCTTGCGTGTGCTTGTTTTTCTTTATTCTATCAGGAAGATTTCCTCTCCTTCAGTTAGAGCTGCATATCTATGATTCTGTTTGATTGCTTGTTTTCGAATATTGAATATTCACTCCATACTTCAAGGATCTCTTATTTGGTGGATTTGTATGTTTAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATCTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGGTTTGTTCCTATCGATTCATCTTTCATCTACTTATTAATATTTTCTATGGCATGACTTATTCATTTCGTTGTCGCTCTATGCTTGTATTGGAGATGGAGTTTTAAGTTGTTGCGAACGTATTCCTGGGAGTCCGCTAAACTTTGTAGGAGAAAATTCACTGTATCCATATTGCCTTTGGTGCAATGTTTCTAATTGTACTTGCGGTTGCTCGGATTTAATTGGAAGAGGTATGCTGTTTTAGATTTATAACCAAAACATCTCGGAGTTATGGAGTCGATAGATAATTTGTTATTTAAAAGATACATCATGAACTAGCCGAAGTCTTGTCTTATATAGTTTATTGATCGTTGAACTTAAAATGCTTGCTTTGTGGCATTTGGACCAAATTAGTTTGGATAAGGTGTTTGTATTCTGCATATGTTAGATTGGCAACTGCTGTTTAAATTATTATGACATGTTGGACACGCTTGTTGAACTTGACACATCAAACACCGTGTTGAATATTTGATGGGTACAAAGTACAATAGACACAGAATGAAGCACATATTGATGTTGCATTTTGGATTTTTGAACACATGTTGGAACAATTATTAGCCATTTGGATATGGATGTTTGAAAAATGGCATGTCAGCCTTTTTGGGAAGCGAGCTACCCTTTCAACTCCTCCAAATTATGTATTTACATGCTTGGATGCATTTTATTTTCTTTATTCTTTCTTTTACTTTCATGAAGTGCAACTTGCATCCTTCGATGGGCATCATACACTAAGAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCTTGATCGTTCATCGTTCTCTTGATGGGAGGTTCGTCCATTCATCATTCTATGGAGATATTTTATAGATTATAGTTTAGATTTGTGAACCCTGTTATCTTTTTAAATTACTGTTCTTATTATATATTTCCTTTGCATTGTTAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCCAATCATTGAAGAACGGGAGGAAACATATGATGATCCTGAGGATGACCAATACTATCCTTATGAGGATGATGATGAAGAGTTAGAGGATGCTTACTTGGGTGAATCACCATCTCTTCGCATTGGGAATCGAAGGTGGGGATACAATGGTTATGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGACCTAGTTCATCGAGGGAGCCCGTAACAAAACAGGCTTCTTCCAAGGACAAAACAGGCCGACGTGCTAAAAGGGCCTTGAAACGAGAAGCTGCAGATAAAGCAGCAGCAGCCAAGCATCAAGAGCATCTGGCTAGGTTTGGCCGGAAGTGATTTTTATGTTTAAAACTCCTGTATAGAACTAAGCTCTGCTCTTTTCTATCTGTACAGCTCTTTGATTCAATCTTCTTTCCTAGCTGATGCACCTTACTAAAGGCTGGTAGCTCCCAATGAAAAACTAAGATAGAGATCATAAATGCTGATAAGGTTGTACATGAGGCCAGCGAATTCTTTGTATAAAATTTGTCTTTTCAGGTGAACAACTGAAGATGGCCTACATGGGTTTGGGTTCGGGTTGAGTTGGTGATCGATTTGTTTTTGCTTTTGTTTTTAATTTTATTTTGAGTAATTTTCTAATGTTAAAAAATTGTGAAATCAAATAGGAAAGA

mRNA sequence

ATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCGAATTGACAGATGCGGTTCAAGGACTAGTTCTTTGCGATCAGAGCGATAAAGATCGGAGGGCTATGGCAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCTGTTCAAGAACAAGTAACTTGCGACCAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATCTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGTGCAACTTGCATCCTTCGATGGGCATCATACACTAAGAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCTTGATCGTTCATCGTTCTCTTGATGGGAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCCAATCATTGAAGAACGGGAGGAAACATATGATGATCCTGAGGATGACCAATACTATCCTTATGAGGATGATGATGAAGAGTTAGAGGATGCTTACTTGGGTGAATCACCATCTCTTCGCATTGGGAATCGAAGGTGGGGATACAATGGTTATGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGACCTAGTTCATCGAGGGAGCCCGTAACAAAACAGGCTTCTTCCAAGGACAAAACAGGCCGACGTGCTAAAAGGGCCTTGAAACGAGAAGCTGCAGATAAAGCAGCAGCAGCCAAGCATCAAGAGCATCTGGCTAGGTTTGGCCGGAAGTGA

Coding sequence (CDS)

ATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCGAATTGACAGATGCGGTTCAAGGACTAGTTCTTTGCGATCAGAGCGATAAAGATCGGAGGGCTATGGCAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCTGTTCAAGAACAAGTAACTTGCGACCAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATCTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGTGCAACTTGCATCCTTCGATGGGCATCATACACTAAGAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCTTGATCGTTCATCGTTCTCTTGATGGGAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCCAATCATTGAAGAACGGGAGGAAACATATGATGATCCTGAGGATGACCAATACTATCCTTATGAGGATGATGATGAAGAGTTAGAGGATGCTTACTTGGGTGAATCACCATCTCTTCGCATTGGGAATCGAAGGTGGGGATACAATGGTTATGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGACCTAGTTCATCGAGGGAGCCCGTAACAAAACAGGCTTCTTCCAAGGACAAAACAGGCCGACGTGCTAAAAGGGCCTTGAAACGAGAAGCTGCAGATAAAGCAGCAGCAGCCAAGCATCAAGAGCATCTGGCTAGGTTTGGCCGGAAGTGA

Protein sequence

MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK*

Homology

[Close]

BLAST of CsaV3_6G039010 vs. NCBI nr
Match: XP_004140197.1 (uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus] >KGN48101.1 hypothetical protein Csa_003121 [Cucumis sativus])

HSP 1 Score: 547.0 bits (1408), Expect = 9.5e-152
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE
Sbjct: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQAS 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQAS
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQAS 240

Query: 241 SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 277
           SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Sbjct: 241 SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of CsaV3_6G039010 vs. NCBI nr
Match: TYJ96112.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 512.3 bits (1318), Expect = 2.6e-141
Identity = 264/277 (95.31%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 277
            SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Sbjct: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of CsaV3_6G039010 vs. NCBI nr
Match: XP_016900768.1 (PREDICTED: uncharacterized protein LOC103491476 [Cucumis melo])

HSP 1 Score: 502.3 bits (1292), Expect = 2.7e-138
Identity = 259/272 (95.22%), Postives = 263/272 (96.69%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
            SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLA 271

[Close]

BLAST of CsaV3_6G039010 vs. NCBI nr
Match: KAA0061770.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 495.4 bits (1274), Expect = 3.3e-136
Identity = 258/272 (94.85%), Postives = 261/272 (95.96%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYDDPEDDQY  Y 
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDDPEDDQY--YH 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
            SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLA 269

[Close]

BLAST of CsaV3_6G039010 vs. NCBI nr
Match: XP_011657615.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus])

HSP 1 Score: 490.7 bits (1262), Expect = 8.1e-135
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0


Query: 33  MATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 92
           MATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA
Sbjct: 1   MATSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETA 60

Query: 93  LVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 152
           LVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR
Sbjct: 61  LVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLR 120

Query: 153 ASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA 212
           ASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA
Sbjct: 121 ASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRA 180

Query: 213 GRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 272
           GRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR
Sbjct: 181 GRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLAR 240

Query: 273 FGRK 277
           FGRK
Sbjct: 241 FGRK 244

[Close]

BLAST of CsaV3_6G039010 vs. ExPASy Swiss-Prot
Match: Q99590 (Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 2.8e-05
Identity = 21/60 (35.00%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 79  CAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSI 138
           C ICLN +  +E      C H +C TCIL+WA      +CP  + PF+ +    +L+G +
Sbjct: 41  CPICLNCLLEKEVGFPESCNHVFCMTCILKWAE--TLASCPIDRKPFQAVFKFSALEGYV 98

[Close]

BLAST of CsaV3_6G039010 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 4.6e-152
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE
Sbjct: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQAS 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQAS
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQAS 240

Query: 241 SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 277
           SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Sbjct: 241 SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of CsaV3_6G039010 vs. ExPASy TrEMBL
Match: A0A5D3B8D7 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00750 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.3e-141
Identity = 264/277 (95.31%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 277
            SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK
Sbjct: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK 276

[Close]

BLAST of CsaV3_6G039010 vs. ExPASy TrEMBL
Match: A0A1S4DXR5 (uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.3e-138
Identity = 259/272 (95.22%), Postives = 263/272 (96.69%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYD+PEDDQYY YE
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDEPEDDQYYHYE 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
            SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLA 271

[Close]

BLAST of CsaV3_6G039010 vs. ExPASy TrEMBL
Match: A0A5A7V3C1 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001490 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 258/272 (94.85%), Postives = 261/272 (95.96%), Query Frame = 0


Query: 1   MSSSGISSQSSELTDAVQGLVLCDQSDKDRRAMATSSGISIQSAEISDAVQEQVTCDQLE 60
           MSSSGISSQSS+LTDAVQGLVL DQSDKDRR M TSSGISIQSAEISDAVQEQVTC QLE
Sbjct: 1   MSSSGISSQSSQLTDAVQGLVLSDQSDKDRRVMTTSSGISIQSAEISDAVQEQVTCHQLE 60

Query: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQ 120
           MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYT+KPTCPQ
Sbjct: 61  MGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTQKPTCPQ 120

Query: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYE 180
           CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP I EEREETYDDPEDDQY  Y 
Sbjct: 121 CKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIFEEREETYDDPEDDQY--YH 180

Query: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT-GPSSSREPVTKQA 240
           DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFT GPSSSR+PVTKQA
Sbjct: 181 DDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGGPSSSRDPVTKQA 240

Query: 241 SSKDKTGRRAKRALKREAADKAAAAKHQEHLA 272
            SKDKTGRRAKRALKREAADKAAAAKHQEHLA
Sbjct: 241 -SKDKTGRRAKRALKREAADKAAAAKHQEHLA 269

[Close]

BLAST of CsaV3_6G039010 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.4e-113
Identity = 208/240 (86.67%), Postives = 223/240 (92.92%), Query Frame = 0


Query: 35  TSSGISIQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALV 94
           TSSGIS++SAE+SDAVQ+   CDQ+EM KK+EIQGTGHGSHDGACAICLNKI+L ETALV
Sbjct: 2   TSSGISLKSAELSDAVQDLKVCDQVEMWKKLEIQGTGHGSHDGACAICLNKISLPETALV 61

Query: 95  RGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 154
           RGCEHAYC TCILRWASYT+KPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS
Sbjct: 62  RGCEHAYCTTCILRWASYTQKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRAS 121

Query: 155 WYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGR 214
           WY+P I+++REETYDDPE  +YYPYED DEELE+AYLG SPSLRIGNRRWG NGYVRAGR
Sbjct: 122 WYEPLIVKDREETYDDPE--EYYPYEDQDEELEEAYLGASPSLRIGNRRWGDNGYVRAGR 181

Query: 215 QEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 274
           QEARPVLR EF+G SSSREP TK A SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG
Sbjct: 182 QEARPVLRPEFSGASSSREPTTKDA-SKDKTGRRAKRALKREAADKAAAAKHQEHLARFG 238

[Close]

BLAST of CsaV3_6G039010 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein )

HSP 1 Score: 252.7 bits (644), Expect = 3.5e-67
Identity = 138/249 (55.42%), Postives = 176/249 (70.68%), Query Frame = 0


Query: 41  IQSAEISDAVQEQVTCDQLEMGKKVEIQGTGHGSHDGACAICLNKIALQETALVRGCEHA 100
           +   ++ D +Q+    +Q +   + EI     G+H G CAICL++I LQETA+V+GCEH 
Sbjct: 8   VSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHT 67

Query: 101 YCATCILRWASYTKKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP-P 160
           YC TCILRWAS  + PTCPQCKHPF+FL VHR+LDGSI D++FEESVCLLLRASW+ P  
Sbjct: 68  YCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLD 127

Query: 161 IIEEREETYDDPED-DQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEAR 220
           ++E+   ++   +D D  Y YED+D++L++ YL  S SLRIGNRRWG NG+VR+GRQEAR
Sbjct: 128 VVEQASYSHGYHDDFDIPYDYEDEDDDLDEFYLHGS-SLRIGNRRWGGNGFVRSGRQEAR 187

Query: 221 PVLRQEFTGP-------SSSREPVTKQASSKDKTGRRAKRALKREAADKA----AAAKHQ 277
           PV R   +G        SSS EP  KQ  + + TGRRAKRA+KREAA+KA    AAAKH+
Sbjct: 188 PVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHE 247

[Close]

BLAST of CsaV3_6G039010 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein )

HSP 1 Score: 249.6 bits (636), Expect = 2.9e-66
Identity = 135/224 (60.27%), Postives = 165/224 (73.66%), Query Frame = 0


Query: 66  EIQGTGHGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPF 125
           EI     G+H G CAICL++I LQETA+V+GCEH YC TCILRWAS  + PTCPQCKHPF
Sbjct: 18  EIHEPSFGNHGGCCAICLSEIPLQETAMVKGCEHTYCVTCILRWASCKESPTCPQCKHPF 77

Query: 126 EFLIVHRSLDGSIHDYMFEESVCLLLRASWYKP-PIIEEREETYDDPED-DQYYPYEDDD 185
           +FL VHR+LDGSI D++FEESVCLLLRASW+ P  ++E+   ++   +D D  Y YED+D
Sbjct: 78  DFLSVHRALDGSIEDFLFEESVCLLLRASWFVPLDVVEQASYSHGYHDDFDIPYDYEDED 137

Query: 186 EELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGP-------SSSREPVT 245
           ++L++ YL  S SLRIGNRRWG NG+VR+GRQEARPV R   +G        SSS EP  
Sbjct: 138 DDLDEFYLHGS-SLRIGNRRWGGNGFVRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKD 197

Query: 246 KQASSKDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK 277
           KQ  + + TGRRAKRA+KREAA+KA    AAAKH+ HL R GRK
Sbjct: 198 KQVKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLVRLGRK 240

[Close]

BLAST of CsaV3_6G039010 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-62
Identity = 128/219 (58.45%), Postives = 158/219 (72.15%), Query Frame = 0


Query: 73  GSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTKKPTCPQCKHPFEFLIVHR 132
           G+H G CAICL+ I LQETA+V+GCEHAYC TCILRWASY +KPTCPQCK PF+FL VHR
Sbjct: 37  GNHGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHR 96

Query: 133 SLDGSIHDYMFEESVCLLLRASWYKPPIIEEREE-----TYDDPEDDQYYPYEDDDEELE 192
           +LDGS+ D+MFEESVCLLLRASW++P    ER        YD     +Y   ++DD++L+
Sbjct: 97  ALDGSVEDFMFEESVCLLLRASWFQPLEAVERVSDNDNFNYDFDIPPEYEEEDEDDDDLD 156

Query: 193 DAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVT------KQASS 252
           + Y+ +  SLR+GNRRWG NG+VRAGRQEARPV  +   G +S  EP +      K+ +S
Sbjct: 157 EFYM-QGSSLRLGNRRWGDNGFVRAGRQEARPVQHKNRGGQASGSEPASSSSCEPKEKTS 216

Query: 253 KDKTGRRAKRALKREAADKA----AAAKHQEHLARFGRK 277
              TGRRAKRA+KREAA+KA    AAAKH+  L R GRK
Sbjct: 217 SAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLGRK 254

The following BLAST results are available for this feature:

BLAST of CsaV3_6G039010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140197.1	9.5e-152	100.00	uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus] >KGN48101.1 hy...	[more]
TYJ96112.1	2.6e-141	95.31	E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_016900768.1	2.7e-138	95.22	PREDICTED: uncharacterized protein LOC103491476 [Cucumis melo]	[more]
KAA0061770.1	3.3e-136	94.85	E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_011657615.1	8.1e-135	100.00	E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_6G039010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99590	2.8e-05	35.00	Protein SCAF11 OS=Homo sapiens OX=9606 GN=SCAF11 PE=1 SV=2	[more]

BLAST of CsaV3_6G039010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK15	4.6e-152	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 P...	[more]
A0A5D3B8D7	1.3e-141	95.31	E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S4DXR5	1.3e-138	95.22	uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=...	[more]
A0A5A7V3C1	1.6e-136	94.85	E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1FXD4	9.4e-113	86.67	uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]

BLAST of CsaV3_6G039010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19430.1	3.5e-67	55.42	RING/U-box superfamily protein	[more]
AT5G19430.2	2.9e-66	60.27	RING/U-box superfamily protein	[more]
AT5G12310.1	2.6e-62	58.45	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 79..121 e-value: 9.4E-6 score: 35.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 78..122 e-value: 1.3E-8 score: 35.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 79..122 score: 12.430266
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 60..145 e-value: 9.0E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..276
None	No IPR available	PANTHER	PTHR47361	RING/U-BOX SUPERFAMILY PROTEIN	coord: 39..276
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 78..129
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 97..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G039010.1	CsaV3_6G039010.1	mRNA