CsaV3_3G038680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G038680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein kinase domain-containing protein
Location	chr3: 31846875 .. 31847389 (-)
RNA-Seq Expression	CsaV3_3G038680
Synteny	CsaV3_3G038680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGAGTATTTCATTTCAAAGGCTGGCTGTGAGAGGGGATGATGCAGATGAAGGGAGTATCGAACTCAGGAGGATTTTGATGGAAACCATGTCGGGTCGGATCTGAATGGAGTTTACTCTCTTTTGCAGAAGCCATGCTCGGAATTCGGACTTAATCTTTCGCTCTCGGCTACTGCGGATGTTTACGTTGGCAAAGATGTTCCGGTGTTCATTTCTTTATCGTCCAGATTAGAAGACCAGTTGAAAAACGGAGTGATTTTTCATCCCCTGAATCTCTCTTTTCTTCTCGAAGAGGGTTATGTTGGCCTCTCCGCTTCGAAATTCGATTTAAATACACAGCTGAATTGGATAAAATCATGGCAATTCAACGGGAGAGACGTCGACAACAACGACGACAATGAATCCGATAACCATCGTCGACAGGTGTATGATACGGCTGGCGTAATCGGTGGACTTGCTCTGTTATTTGGGGTTGAACTCTTCCGCTTTTGGGTCGTGGAAGAAACGTAA

mRNA sequence

ATGGGAATGAGTATTTCATTTCAAAGGCTGGCTAAGCCATGCTCGGAATTCGGACTTAATCTTTCGCTCTCGGCTACTGCGGATGTTTACGTTGGCAAAGATGTTCCGGTGTTCATTTCTTTATCGTCCAGATTAGAAGACCAGTTGAAAAACGGAGTGATTTTTCATCCCCTGAATCTCTCTTTTCTTCTCGAAGAGGGTTATGTTGGCCTCTCCGCTTCGAAATTCGATTTAAATACACAGCTGAATTGGATAAAATCATGGCAATTCAACGGGAGAGACGTCGACAACAACGACGACAATGAATCCGATAACCATCGTCGACAGGTGTATGATACGGCTGGCGTAATCGGTGGACTTGCTCTGTTATTTGGGGTTGAACTCTTCCGCTTTTGGGTCGTGGAAGAAACGTAA

Coding sequence (CDS)

ATGGGAATGAGTATTTCATTTCAAAGGCTGGCTAAGCCATGCTCGGAATTCGGACTTAATCTTTCGCTCTCGGCTACTGCGGATGTTTACGTTGGCAAAGATGTTCCGGTGTTCATTTCTTTATCGTCCAGATTAGAAGACCAGTTGAAAAACGGAGTGATTTTTCATCCCCTGAATCTCTCTTTTCTTCTCGAAGAGGGTTATGTTGGCCTCTCCGCTTCGAAATTCGATTTAAATACACAGCTGAATTGGATAAAATCATGGCAATTCAACGGGAGAGACGTCGACAACAACGACGACAATGAATCCGATAACCATCGTCGACAGGTGTATGATACGGCTGGCGTAATCGGTGGACTTGCTCTGTTATTTGGGGTTGAACTCTTCCGCTTTTGGGTCGTGGAAGAAACGTAA

Protein sequence

MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGLALLFGVELFRFWVVEET*

Homology

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BLAST of CsaV3_3G038680 vs. NCBI nr
Match: KGN59429.2 (hypothetical protein Csa_001169 [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNL 60
           MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNL
Sbjct: 1   MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNL 60

Query: 61  SFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGL 120
           SFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGL
Sbjct: 61  SFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGL 120

Query: 121 ALLFGVELFRFWVVEET 138
           ALLFGVELFRFWVVEET
Sbjct: 121 ALLFGVELFRFWVVEET 137

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BLAST of CsaV3_3G038680 vs. NCBI nr
Match: XP_038903656.1 (probable L-type lectin-domain containing receptor kinase S.5 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-38
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 10  LAKPCSEFGLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLL 69
           L KP SEFG+N  LSA ADV+      G++V VF+SLSSRLEDQLKN VIFHPLNLSFL 
Sbjct: 178 LQKPLSEFGVN--LSAMADVFARVDFDGENVSVFVSLSSRLEDQLKNRVIFHPLNLSFLP 237

Query: 70  EEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGLALLF 129
           +E YVG SASKFD N+Q+NWIKSWQF G DVD +D+ ESDNHRR+VY T GVI GL LLF
Sbjct: 238 DEVYVGFSASKFDFNSQINWIKSWQFLGTDVD-DDEEESDNHRRRVYITVGVISGLVLLF 297

Query: 130 GVELFRFWVVEE 137
           GV    FW++++
Sbjct: 298 GVGFLWFWIMKK 306

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BLAST of CsaV3_3G038680 vs. NCBI nr
Match: XP_022935657.1 (probable L-type lectin-domain containing receptor kinase S.5 [Cucurbita moschata])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-29
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 18  GLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEGYVGLS 77
           G+ ++LS TADV+V     G+++ VF+SLSSRLEDQLK+ VIFHPLNLSFL +E YVG S
Sbjct: 187 GIGVNLSGTADVFVRVDFDGENISVFVSLSSRLEDQLKSRVIFHPLNLSFLPDEVYVGFS 246

Query: 78  ASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGV-IGGLALLFGVELFRF 137
           ASKFD ++QLNWIKSWQF+G DV    D ES+NHRR V    GV + G+ LL GV    F
Sbjct: 247 ASKFDYSSQLNWIKSWQFSGDDV---GDVESNNHRRWVNIAIGVGVSGVVLLLGVGFLWF 306

[Close]

BLAST of CsaV3_3G038680 vs. NCBI nr
Match: KAG6580798.1 (putative L-type lectin-domain containing receptor kinase S.5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-29
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 18  GLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEGYVGLS 77
           G+ ++LS TADV+V     G+++ VF+SLSSRLEDQLK+ VIFHPLNLSFL +E YVG S
Sbjct: 187 GIGVNLSGTADVFVRVDFDGENISVFVSLSSRLEDQLKSRVIFHPLNLSFLPDEVYVGFS 246

Query: 78  ASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGV-IGGLALLFGVELFRF 137
           ASKFD ++QLNWIKSWQF+G DV    D ES+NHRR V    GV + G+ LL GV    F
Sbjct: 247 ASKFDYSSQLNWIKSWQFSGDDV---GDVESNNHRRWVNIAIGVGVSGVVLLLGVGFLWF 306

[Close]

BLAST of CsaV3_3G038680 vs. NCBI nr
Match: XP_022982876.1 (probable L-type lectin-domain containing receptor kinase S.5 [Cucurbita maxima])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-28
Identity = 73/125 (58.40%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 18  GLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEGYVGLS 77
           G+ ++LS TADV+V     G+++ VF+SLSSRLEDQLK+ VIFHPLNLSFL +E YVG S
Sbjct: 187 GIGVNLSGTADVFVRVDFDGENIAVFVSLSSRLEDQLKSRVIFHPLNLSFLPDEVYVGFS 246

Query: 78  ASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGV-IGGLALLFGVELFRF 137
           ASKFD  +QLNWIKSWQF G DV   DD ES+N RR V    GV + G+ LL GV    F
Sbjct: 247 ASKFDYISQLNWIKSWQFTGDDV---DDEESNNRRRWVDIAVGVGVSGVVLLLGVGFLWF 306

[Close]

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL
Match: A0A0A0LF07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800700 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNL 60
           MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNL
Sbjct: 1   MGMSISFQRLAKPCSEFGLNLSLSATADVYVGKDVPVFISLSSRLEDQLKNGVIFHPLNL 60

Query: 61  SFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQ 110
           SFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQ
Sbjct: 61  SFLLEEGYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQ 109

[Close]

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL
Match: A0A6J1F671 (probable L-type lectin-domain containing receptor kinase S.5 OS=Cucurbita moschata OX=3662 GN=LOC111442448 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.2e-29
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 18  GLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEGYVGLS 77
           G+ ++LS TADV+V     G+++ VF+SLSSRLEDQLK+ VIFHPLNLSFL +E YVG S
Sbjct: 187 GIGVNLSGTADVFVRVDFDGENISVFVSLSSRLEDQLKSRVIFHPLNLSFLPDEVYVGFS 246

Query: 78  ASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGV-IGGLALLFGVELFRF 137
           ASKFD ++QLNWIKSWQF+G DV    D ES+NHRR V    GV + G+ LL GV    F
Sbjct: 247 ASKFDYSSQLNWIKSWQFSGDDV---GDVESNNHRRWVNIAIGVGVSGVVLLLGVGFLWF 306

[Close]

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL
Match: A0A6J1J0L6 (probable L-type lectin-domain containing receptor kinase S.5 OS=Cucurbita maxima OX=3661 GN=LOC111481592 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.2e-29
Identity = 73/125 (58.40%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 18  GLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEGYVGLS 77
           G+ ++LS TADV+V     G+++ VF+SLSSRLEDQLK+ VIFHPLNLSFL +E YVG S
Sbjct: 187 GIGVNLSGTADVFVRVDFDGENIAVFVSLSSRLEDQLKSRVIFHPLNLSFLPDEVYVGFS 246

Query: 78  ASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGV-IGGLALLFGVELFRF 137
           ASKFD  +QLNWIKSWQF G DV   DD ES+N RR V    GV + G+ LL GV    F
Sbjct: 247 ASKFDYISQLNWIKSWQFTGDDV---DDEESNNRRRWVDIAVGVGVSGVVLLLGVGFLWF 306

[Close]

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL
Match: A0A6J1DVK5 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024852 OS=Momordica charantia OX=3673 GN=LOC111024852 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 12  KPCSEFGLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEE 71
           KP SEF +N  LSA  DV+V     G+++ +++S SSRLEDQLK+ VIFHPLNLS L +E
Sbjct: 178 KPLSEFRVN--LSAMTDVFVRADFDGQNISIYVSTSSRLEDQLKSRVIFHPLNLSVLPDE 237

Query: 72  GYVGLSASKFDLNTQLNWIKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGLALLFGV 131
            YVG SASKF+  +QLNWIKSWQF+G DV ++DD    +HRR       V GGL  + GV
Sbjct: 238 VYVGFSASKFNYESQLNWIKSWQFSGTDVVDDDDK---HHRRGWVWITAVAGGLVFISGV 297

Query: 132 ELFRFWVVEE 137
            +  FWVV +
Sbjct: 298 AILCFWVVRK 302

[Close]

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL
Match: A0A6J1DD00 (probable L-type lectin-domain containing receptor kinase S.5 OS=Momordica charantia OX=3673 GN=LOC111019347 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-24
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 13  PCSEFGLNLSLSATADVYV-----GKDVPVFISLSSRLEDQLKNGVIFHPLNLSFLLEEG 72
           P SEFG+N  LSAT D+YV     GK++ +++SLS+RLED+LKN VIFHPLNLS L +E 
Sbjct: 182 PLSEFGVN--LSATDDIYVRAEFDGKNISIYVSLSARLEDRLKNRVIFHPLNLSVLPDEV 241

Query: 73  YVGLSASKFDLNTQLNW-IKSWQFNGRDVDNNDDNESDNHRRQVYDTAGVIGGLALLFGV 132
           Y+G SASKF+ N QLNW +KSWQF+G D+ +         RR V+   G  GGL LL GV
Sbjct: 242 YLGFSASKFEYNAQLNWGVKSWQFSGTDIGDK--------RRWVWVFLGA-GGLVLLSGV 300

Query: 133 ELFRFWVVEE 137
            L   W++ +
Sbjct: 302 ALLILWIMRK 300

The following BLAST results are available for this feature:

BLAST of CsaV3_3G038680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59429.2	1.9e-71	100.00	hypothetical protein Csa_001169 [Cucumis sativus]	[more]
XP_038903656.1	4.6e-38	66.67	probable L-type lectin-domain containing receptor kinase S.5 [Benincasa hispida]	[more]
XP_022935657.1	6.7e-29	58.40	probable L-type lectin-domain containing receptor kinase S.5 [Cucurbita moschata...	[more]
KAG6580798.1	6.7e-29	58.40	putative L-type lectin-domain containing receptor kinase S.5, partial [Cucurbita...	[more]
XP_022982876.1	1.5e-28	58.40	probable L-type lectin-domain containing receptor kinase S.5 [Cucurbita maxima]	[more]

BLAST of CsaV3_3G038680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF07	1.3e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G800700 PE=4 SV=1	[more]
A0A6J1F671	3.2e-29	58.40	probable L-type lectin-domain containing receptor kinase S.5 OS=Cucurbita moscha...	[more]
A0A6J1J0L6	7.2e-29	58.40	probable L-type lectin-domain containing receptor kinase S.5 OS=Cucurbita maxima...	[more]
A0A6J1DVK5	2.0e-26	53.85	LOW QUALITY PROTEIN: uncharacterized protein LOC111024852 OS=Momordica charantia...	[more]
A0A6J1DD00	2.4e-24	52.31	probable L-type lectin-domain containing receptor kinase S.5 OS=Momordica charan...	[more]

BLAST of CsaV3_3G038680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001220	Legume lectin domain	PFAM	PF00139	Lectin_legB	coord: 47..102 e-value: 2.7E-6 score: 27.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G038680.1	CsaV3_3G038680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0030246	carbohydrate binding