Bhi11G000680 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000680
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Glutamate receptor, ionotropic kainate 1, 2, 3
Location	chr11: 21923776 .. 21924050 (+)
RNA-Seq Expression	Bhi11G000680
Synteny	Bhi11G000680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCCGTAGGAGTTAGACTTGGAATTTGGGTAGGAGTTTCAGTTGTAAGAGTTGGGGTGGGGGTTGGATTGAGATATGATGTAGGAATCAGAGAAGGGATTTCAGTGGGATCTGTAGTAGGCTGTGGACTAGGGGTGGGAATGGCTTGTGGTGTAAAAGTTAGAGTGGGATCTGTAGGGTTGAAGGGATTGGGGATTGGATTGGCTTCCATTCTCAGACTGGACTTGGAATGGAGTAGGGGTTGGAAAAGCTTCCAGTATGTGAAGTTGGGCTGA

mRNA sequence

GAGCCGTAGGAGTTAGACTTGGAATTTGGGTAGGAGTTTCAGTTGTAAGAGTTGGGGTGGGGGTTGGATTGAGATATGATGTAGGAATCAGAGAAGGGATTTCAGTGGGATCTGTAGTAGGCTGTGGACTAGGGGTGGGAATGGCTTGTGGTGTAAAAGTTAGAGTGGGATCTGTAGGGTTGAAGGGATTGGGGATTGGATTGGCTTCCATTCTCAGACTGGACTTGGAATGGAGTAGGGGTTGGAAAAGCTTCCAGTATGTGAAGTTGGGCTGA

Coding sequence (CDS)

GAGCCGTAGGAGTTAGACTTGGAATTTGGGTAGGAGTTTCAGTTGTAAGAGTTGGGGTGGGGGTTGGATTGAGATATGATGTAGGAATCAGAGAAGGGATTTCAGTGGGATCTGTAGTAGGCTGTGGACTAGGGGTGGGAATGGCTTGTGGTGTAAAAGTTAGAGTGGGATCTGTAGGGTTGAAGGGATTGGGGATTGGATTGGCTTCCATTCTCAGACTGGACTTGGAATGGAGTAGGGGTTGGAAAAGCTTCCAGTATGTGAAGTTGGGCTGA

Protein sequence

AVGVRLGIWVGVSVVRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVGSVGLKGLGIGLASILRLDLEWSRGWKSFQYVKLG

Homology

[Close]

BLAST of Bhi11G000680 vs. NCBI nr
Match: EDS31408.1 (glutamate receptor, ionotropic kainate 1, 2, 3 [Culex quinquefasciatus])

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-06
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG-SVG 61
           VGV +G+ VGV V V VGVGVG+   VG+  G+ VG  VG G+GVG+  GV V VG  VG
Sbjct: 32  VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 91

Query: 62  LKGLGIGLASILRLDLEWSRGWKSFQYV 88
           + G+G+G+ + + L   W  GWKSF  +
Sbjct: 92  V-GVGVGVGAYVDLVAAW--GWKSFTII 116

[Close]

BLAST of Bhi11G000680 vs. NCBI nr
Match: OLQ12049.1 (Ankyrin-1 [Symbiodinium microadriaticum])

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG-SVG 61
           VGV +G+ VGV V V VGVGVG+   VG+  G+ VG  VG G+GVG+  GV V VG  VG
Sbjct: 419 VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 478

Query: 62  LKGLGIGLASILRLDLEWSRGWKSFQYVKL 90
           + G+G+G+   + +   W   W++F   +L
Sbjct: 479 V-GVGVGVGVGVGVGDSWLLIWRAFTRQRL 507

[Close]

BLAST of Bhi11G000680 vs. NCBI nr
Match: OLP84848.1 (hypothetical protein AK812_SmicGene34229 [Symbiodinium microadriaticum])

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG-SVG 61
           VGV +G+ VGV V V VGVGVG+   VG+  G+ VG  VG G+GVG+  GV V VG  VG
Sbjct: 521 VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 580

Query: 62  LKGLGIGLASILRLDL 76
           + G+G+GL  + RL L
Sbjct: 581 V-GVGVGLPDMFRLPL 595

[Close]

BLAST of Bhi11G000680 vs. NCBI nr
Match: SEJ42973.1 (hypothetical protein SAMN04487917_105457 [Arthrobacter sp. yr096])

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 2  VGVRLGIWVGVSV-----VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG 61
          VGV +G+ VGV+V     VRVGVGVG+  DVG+  G+++G  VG G+GV +   + VRVG
Sbjct: 11 VGVGVGVGVGVAVGLALGVRVGVGVGVAVDVGVGVGVALGVRVGVGVGVAVGLALGVRVG 70

Query: 62 SVGLKGLGIGLASI 71
             L  +G+GLA +
Sbjct: 71 VAVLVAVGVGLAVV 84

[Close]

BLAST of Bhi11G000680 vs. NCBI nr
Match: KAG9294104.1 (hypothetical protein G9A89_015514, partial [Geosiphon pyriformis])

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-04
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG---S 61
           +G+ LG+W+G+ + + +G+G+GL   +GI  GI +G  +G G+G+G+  G+ + +G    
Sbjct: 269 IGLGLGLWIGIGIGIGIGLGLGLGIGIGIGLGIGIGIGIGIGIGIGIGIGIGIGIGIGIG 328

Query: 62  VGLK---GLGIGLASILRLDL 76
           +GL+   GLG+GL   LRL L
Sbjct: 329 IGLRLGLGLGLGLGLGLRLGL 349

[Close]

BLAST of Bhi11G000680 vs. ExPASy TrEMBL
Match: B0XK75 (Glutamate receptor, ionotropic kainate 1, 2, 3 OS=Culex quinquefasciatus OX=7176 GN=6054072 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG-SVG 61
           VGV +G+ VGV V V VGVGVG+   VG+  G+ VG  VG G+GVG+  GV V VG  VG
Sbjct: 32  VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 91

Query: 62  LKGLGIGLASILRLDLEWSRGWKSFQYV 88
           + G+G+G+ + + L   W  GWKSF  +
Sbjct: 92  V-GVGVGVGAYVDLVAAW--GWKSFTII 116

[Close]

BLAST of Bhi11G000680 vs. ExPASy TrEMBL
Match: A0A1Q9EXB5 (Ankyrin-1 OS=Symbiodinium microadriaticum OX=2951 GN=ANK1 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG-SVG 61
           VGV +G+ VGV V V VGVGVG+   VG+  G+ VG  VG G+GVG+  GV V VG  VG
Sbjct: 419 VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 478

Query: 62  LKGLGIGLASILRLDLEWSRGWKSFQYVKL 90
           + G+G+G+   + +   W   W++F   +L
Sbjct: 479 V-GVGVGVGVGVGVGDSWLLIWRAFTRQRL 507

[Close]

BLAST of Bhi11G000680 vs. ExPASy TrEMBL
Match: A0A1Q9CPJ3 (Uncharacterized protein OS=Symbiodinium microadriaticum OX=2951 GN=AK812_SmicGene34229 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 2   VGVRLGIWVGVSV-VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG-SVG 61
           VGV +G+ VGV V V VGVGVG+   VG+  G+ VG  VG G+GVG+  GV V VG  VG
Sbjct: 521 VGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVGVG 580

Query: 62  LKGLGIGLASILRLDL 76
           + G+G+GL  + RL L
Sbjct: 581 V-GVGVGLPDMFRLPL 595

[Close]

BLAST of Bhi11G000680 vs. ExPASy TrEMBL
Match: A0A1H6YNT6 (Uncharacterized protein OS=Arthrobacter sp. yr096 OX=1761750 GN=SAMN04487917_105457 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 2  VGVRLGIWVGVSV-----VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG 61
          VGV +G+ VGV+V     VRVGVGVG+  DVG+  G+++G  VG G+GV +   + VRVG
Sbjct: 11 VGVGVGVGVGVAVGLALGVRVGVGVGVAVDVGVGVGVALGVRVGVGVGVAVGLALGVRVG 70

Query: 62 SVGLKGLGIGLASI 71
             L  +G+GLA +
Sbjct: 71 VAVLVAVGVGLAVV 84

[Close]

BLAST of Bhi11G000680 vs. ExPASy TrEMBL
Match: A0A372DE93 (Uncharacterized protein OS=Limnothrix sp. CACIAM 69d OX=1890733 GN=BJG00_015910 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 2  VGVRLGIWVGVSV-----VRVGVGVGLRYDVGIREGISVGSVVGCGLGVGMACGVKVRVG 61
          VGVR+G+ VGV V     VRVGVGVG+R  VG+  G  VG  VG G  VG+  GV++ VG
Sbjct: 7  VGVRVGVGVGVRVGVGVGVRVGVGVGVRVGVGVGVGGRVGVGVGVGGRVGIGLGVRMGVG 66

Query: 62 SVGLKGLGIGLASILRLDL 76
            G  G+G+G+   L L L
Sbjct: 67 VGGRVGVGVGVTGRLGLGL 85

The following BLAST results are available for this feature:

BLAST of Bhi11G000680 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000680 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000680 vs. NCBI nr


Match Name	E-value	Identity	Description
EDS31408.1	6.7e-06	48.86	glutamate receptor, ionotropic kainate 1, 2, 3 [Culex quinquefasciatus]	[more]
OLQ12049.1	3.7e-04	44.44	Ankyrin-1 [Symbiodinium microadriaticum]	[more]
OLP84848.1	4.8e-04	52.63	hypothetical protein AK812_SmicGene34229 [Symbiodinium microadriaticum]	[more]
SEJ42973.1	4.8e-04	47.30	hypothetical protein SAMN04487917_105457 [Arthrobacter sp. yr096]	[more]
KAG9294104.1	6.3e-04	38.27	hypothetical protein G9A89_015514, partial [Geosiphon pyriformis]	[more]

BLAST of Bhi11G000680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B0XK75	3.3e-06	48.86	Glutamate receptor, ionotropic kainate 1, 2, 3 OS=Culex quinquefasciatus OX=7176...	[more]
A0A1Q9EXB5	1.8e-04	44.44	Ankyrin-1 OS=Symbiodinium microadriaticum OX=2951 GN=ANK1 PE=4 SV=1	[more]
A0A1Q9CPJ3	2.3e-04	52.63	Uncharacterized protein OS=Symbiodinium microadriaticum OX=2951 GN=AK812_SmicGen...	[more]
A0A1H6YNT6	2.3e-04	47.30	Uncharacterized protein OS=Arthrobacter sp. yr096 OX=1761750 GN=SAMN04487917_105...	[more]
A0A372DE93	4.0e-04	49.37	Uncharacterized protein OS=Limnothrix sp. CACIAM 69d OX=1890733 GN=BJG00_015910 ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000680	Bhi11M000680	mRNA