Bhi09G000671 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G000671
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DELLA protein RGL2-like
Location	chr9: 18189190 .. 18190081 (-)
RNA-Seq Expression	Bhi09G000671
Synteny	Bhi09G000671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGGTTTCTTTTCCTTCACACCATTTGATTTCAGTGGCTCACGAGCAGGAACTTTCTTCCCCTCTAATGGCGTCCACGAGAAACCGGAGACTGAGCACAGAGGCAAAGAAGACGATTGTCCATTTAGAATGGAGGAGTTTGGAGATTTCAACTTTCTCTCAGCTAATCAATCTGGCTTATACCAACAGGACATTCTCAAGATTGGAGATCAAACAAACTATCAACAGCCCAACTCAGATTGTCTTATTTTTGACGAATTGCTGTTTGACAACGATTTTACCATTTCCGAATTGATTCGGGAGAAGTCGAAGATATCGGAAAACCCGGCGGCATATTCTATCAGTTTGAACCCCAGTAAACAAGTTTCGAATCCACGTTTAGAATCTTTGCAGCTGCTAAACAGCTATGGTACCAAACAAAGTCAAGAGGAAGAAAGGGACAATTCTTAACAAAAAAGGCGGTAAAGCCAGTGTGAAGAGAACAGAACATTGTCAACTGAAGAGATATTAAGGGTAGCTGGAGCAAGATATGTTCATTTCTTCCCTGATGGTTATGATGACGTTTACATGCTGAGGCATCCGTGTGATTTCTCTATCTCCGGTCTGTTGAAGGATGAGAGAGAAGAAGTTGAGCTTGCCCATGTTCTCTTTGCTGCAGCTGAGAAAGTAGGCTAACAGCAATTTGATCGAGCGAGCCGGCTGCTTCAATGCCGTTAATGGGCTGCATCTGCCTACGGTAACGCAGTCCAGCAGCTCGTTTCTTACTTTGCGAAAGCACTTAGACAATTTCAAAAGAGAAACTGGACAGGAAGCAATTAAGGAGCAAAAAGAAGAGGAAATGAACCTTGAAGCACTTAAAGGATGCACGAAACTTTTCAGCAAGTGA

mRNA sequence

ATGGCTGATGGTTTCTTTTCCTTCACACCATTTGATTTCAGTGGCTCACGAGCAGGAACTTTCTTCCCCTCTAATGGCGTCCACGAGAAACCGGAGACTGAGCACAGAGGCAAAGAAGACGATTGTCCATTTAGAATGGAGGAGTTTGGAGATTTCAACTTTCTCTCAGCTAATCAATCTGGCTTATACCAACAGGACATTCTCAAGATTGGAGATCAAACAAACTATCAACAGCCCAACTCAGATTGTCTTATTTTTGACGAATTGCTGTTTGACAACGATTTTACCATTTCCGAATTGATTCGGGAGAAGTCGAAGATATCGGAAAACCCGGCGGCATATTCTATCAGTTTGAACCCCAGTAAACAAGTTTCGAATCCACGTTTAGAATCTTTGCAGCTGCTAAACAGCTATGAGATATTAAGGGTAGCTGGAGCAAGATATGTTCATTTCTTCCCTGATGGTTATGATGACGTTTACATGCTGAGGCATCCGTGTGATTTCTCTATCTCCGGTCTGTTGAAGGATGAGAGAGAAGAAGTTGAGCTTGCCCATGTTCTCTTTGCTGCAGCTGAGAAATCCAGCAGCTCGTTTCTTACTTTGCGAAAGCACTTAGACAATTTCAAAAGAGAAACTGGACAGGAAGCAATTAAGGAGCAAAAAGAAGAGGAAATGAACCTTGAAGCACTTAAAGGATGCACGAAACTTTTCAGCAAGTGA

Coding sequence (CDS)

ATGGCTGATGGTTTCTTTTCCTTCACACCATTTGATTTCAGTGGCTCACGAGCAGGAACTTTCTTCCCCTCTAATGGCGTCCACGAGAAACCGGAGACTGAGCACAGAGGCAAAGAAGACGATTGTCCATTTAGAATGGAGGAGTTTGGAGATTTCAACTTTCTCTCAGCTAATCAATCTGGCTTATACCAACAGGACATTCTCAAGATTGGAGATCAAACAAACTATCAACAGCCCAACTCAGATTGTCTTATTTTTGACGAATTGCTGTTTGACAACGATTTTACCATTTCCGAATTGATTCGGGAGAAGTCGAAGATATCGGAAAACCCGGCGGCATATTCTATCAGTTTGAACCCCAGTAAACAAGTTTCGAATCCACGTTTAGAATCTTTGCAGCTGCTAAACAGCTATGAGATATTAAGGGTAGCTGGAGCAAGATATGTTCATTTCTTCCCTGATGGTTATGATGACGTTTACATGCTGAGGCATCCGTGTGATTTCTCTATCTCCGGTCTGTTGAAGGATGAGAGAGAAGAAGTTGAGCTTGCCCATGTTCTCTTTGCTGCAGCTGAGAAATCCAGCAGCTCGTTTCTTACTTTGCGAAAGCACTTAGACAATTTCAAAAGAGAAACTGGACAGGAAGCAATTAAGGAGCAAAAAGAAGAGGAAATGAACCTTGAAGCACTTAAAGGATGCACGAAACTTTTCAGCAAGTGA

Protein sequence

MADGFFSFTPFDFSGSRAGTFFPSNGVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQSGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLNPSKQVSNPRLESLQLLNSYEILRVAGARYVHFFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEKSSSSFLTLRKHLDNFKRETGQEAIKEQKEEEMNLEALKGCTKLFSK

Homology

[Close]

BLAST of Bhi09G000671 vs. ExPASy TrEMBL
Match: A0A0A0K9I9 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407700 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.7e-87
Identity = 185/296 (62.50%), Postives = 208/296 (70.27%), Query Frame = 0


Query: 1   MADGFFSFTPFDFSGSRAGTFFPSN-GVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQ 60
           MADGFFSFTPFDFSGS+ GTFFPSN GVHEK ETE RGKEDDCPFRM+EFGDFNF SANQ
Sbjct: 1   MADGFFSFTPFDFSGSQPGTFFPSNGGVHEKQETEQRGKEDDCPFRMDEFGDFNFPSANQ 60

Query: 61  SGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLN 120
            G YQQDI KIGDQTNY+ PN+DCLIFDELLF NDF ISELI+EKSKISE+ AA SIS N
Sbjct: 61  FGFYQQDISKIGDQTNYEHPNTDCLIFDELLFGNDFNISELIQEKSKISESLAADSISFN 120

Query: 121 PSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYVH 180
            +KQVSNP L+SLQLLNSY                             EILRVAGARYVH
Sbjct: 121 SNKQVSNPCLDSLQLLNSYGTKVKRMNGENLNKRGDEVNEENKTLSTEEILRVAGARYVH 180

Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK----------------- 237
           FFP+G+DD YML HPCDF++SGL KDERE+VELAHVLFAAAEK                 
Sbjct: 181 FFPEGHDDFYMLTHPCDFALSGLSKDEREDVELAHVLFAAAEKVGYQQFDRGSRLLQRCE 240

[Close]

BLAST of Bhi09G000671 vs. ExPASy TrEMBL
Match: A0A5A7TXT2 (DELLA protein RGL2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001730 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.2e-85
Identity = 184/296 (62.16%), Postives = 205/296 (69.26%), Query Frame = 0


Query: 1   MADGFFSFTPFDFSGSRAGTFFPSN-GVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQ 60
           MADGFFSFTPFDFSGS+  TFFPSN GVHEK ETE RGKEDDCPFRM+EFGDFNF SANQ
Sbjct: 1   MADGFFSFTPFDFSGSQPETFFPSNGGVHEKQETEQRGKEDDCPFRMDEFGDFNFPSANQ 60

Query: 61  SGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLN 120
            G YQQDI KI DQTNYQ PNSDCLIFDELLF NDFTISELI+EKSKISEN +A SIS N
Sbjct: 61  FGFYQQDISKIVDQTNYQHPNSDCLIFDELLFGNDFTISELIQEKSKISENLSADSISFN 120

Query: 121 PSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYVH 180
            +KQVSNP L+SLQLLNSY                             EI RVAGARYVH
Sbjct: 121 SNKQVSNPCLDSLQLLNSYGTKVKRMKGENLNKRGDEAGEENKTLSTEEIFRVAGARYVH 180

Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK-------SSSSFL---- 237
           FFP+G+DD YML HPCDF++SGL +DERE+VELA+VLFAAAEK        +S  L    
Sbjct: 181 FFPEGHDDFYMLTHPCDFALSGLSEDEREDVELANVLFAAAEKVGYQQFDRASRLLQRCE 240

[Close]

BLAST of Bhi09G000671 vs. ExPASy TrEMBL
Match: A0A1S3BQZ0 (DELLA protein RGL2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492753 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 4.6e-84
Identity = 182/296 (61.49%), Postives = 204/296 (68.92%), Query Frame = 0


Query: 1   MADGFFSFTPFDFSGSRAGTFFPSN-GVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQ 60
           MADGFFSFTPFDFSGS+  TFFPSN GVHEK ETE  GKEDDCPFRM+EFGDFNF SANQ
Sbjct: 1   MADGFFSFTPFDFSGSQPETFFPSNGGVHEKQETEQHGKEDDCPFRMDEFGDFNFPSANQ 60

Query: 61  SGLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLN 120
            G YQQDI KI DQTNYQ PNSDCLIFDELLF NDFTISELI+EKSKISEN +A SIS N
Sbjct: 61  FGFYQQDISKIVDQTNYQHPNSDCLIFDELLFGNDFTISELIQEKSKISENLSADSISFN 120

Query: 121 PSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYVH 180
            +KQVSNP L+SLQLLNSY                             EI RVAGARYVH
Sbjct: 121 SNKQVSNPCLDSLQLLNSYGTKVKRMKGENLNKRGDEAGEENKTLSTEEIFRVAGARYVH 180

Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK-------SSSSFL---- 237
           FFP+G+DD YML HPCDF++SGL +DERE+VELA+VLFAAAEK        +S  L    
Sbjct: 181 FFPEGHDDFYMLTHPCDFALSGLSEDEREDVELANVLFAAAEKVGYQQFDRASRLLQRCE 240

[Close]

BLAST of Bhi09G000671 vs. ExPASy TrEMBL
Match: A0A6J1CTR1 (DELLA protein RGL2-like OS=Momordica charantia OX=3673 GN=LOC111014683 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79
Identity = 177/297 (59.60%), Postives = 201/297 (67.68%), Query Frame = 0


Query: 1   MADGFFSFTPFDFSGSRAGTFFPSNGVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQS 60
           MADGFFSFTPFDF+GS+   FFP NG +EKPE+E RGK DDCPFRMEEFGDFNFLSA+QS
Sbjct: 1   MADGFFSFTPFDFNGSQGEAFFPFNGCYEKPESELRGKADDCPFRMEEFGDFNFLSADQS 60

Query: 61  GLYQQDILKIGDQTNYQQPNSDCLIFDELLFDNDFTISELIREKSKISENPAAYSISLNP 120
           G YQQ++ KIGDQTNYQQP SD LIFDELLF+N+ TISE I EKSKISEN AA SIS NP
Sbjct: 61  GFYQQNVPKIGDQTNYQQPYSDDLIFDELLFNNNITISESIPEKSKISENLAADSISFNP 120

Query: 121 SKQVSNPRLESLQLLNSY------------------------------EILRVAGARYVH 180
           SKQVSNP LESLQLLNSY                              EILRVAGARYVH
Sbjct: 121 SKQVSNPCLESLQLLNSYGAKFKRRMKGTKLGNRGIEASEENKKLSTEEILRVAGARYVH 180

Query: 181 FFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEK-------SSSSFL---- 237
           FFP+G+DD YM  HPCDF++SGL +DE ++VELAHVLFAAAEK        +S  L    
Sbjct: 181 FFPEGHDDFYMPMHPCDFALSGLSEDEIKDVELAHVLFAAAEKVGYQQYDRASRLLQRCE 240

[Close]

BLAST of Bhi09G000671 vs. ExPASy TrEMBL
Match: A0A6J1GPK2 (DELLA protein RGL1-like OS=Cucurbita moschata OX=3662 GN=LOC111455972 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.5e-71
Identity = 165/295 (55.93%), Postives = 188/295 (63.73%), Query Frame = 0


Query: 1   MADGFFSFTPFDFSGSRAGTFFPSNGVHEKPETEHRGKEDDCPFRMEEFGDFNFLSANQS 60
           MAD FF FTPFDF+GS AGTFFPSNG+H+  ETE RGKEDDCPF   E GDFNF+S +QS
Sbjct: 1   MADDFFPFTPFDFNGSLAGTFFPSNGIHQNQETELRGKEDDCPF--GELGDFNFVSPDQS 60

Query: 61  GLYQQDILKIGDQTNYQQPNSDCLIFDELLF--DNDFTISELIREKSKISENPAAYSISL 120
           G YQQDILKIG++T Y QPNSDCLI +E+LF   NDFT+SELI+EKSKIS+N  A SI  
Sbjct: 61  GFYQQDILKIGNETEYPQPNSDCLILNEILFGIGNDFTLSELIQEKSKISDNLNADSI-- 120

Query: 121 NPSKQVSNPRLESLQLLNSY-----------------------------EILRVAGARYV 180
             SKQV NP LESLQLLNSY                             EILRVAGARYV
Sbjct: 121 --SKQVLNPCLESLQLLNSYGAKVKRMKGTDLEKRGGEASEENKSLSTEEILRVAGARYV 180

Query: 181 HFFPDGYDDVYMLRHPCDFSISGLLKDEREEVELAHVLFAAAEKSSSS------------ 237
           HFFP+G+D+ YM  HPCDF+++GL  DER +VELAHVLFAAAEK S              
Sbjct: 181 HFFPEGHDEFYMPMHPCDFALTGLSVDERNDVELAHVLFAAAEKVSYQQYERASRLLQRC 240

The following BLAST results are available for this feature:

BLAST of Bhi09G000671 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000671 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G000671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9I9	7.7e-87	62.50	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G407700 PE=3 S...	[more]
A0A5A7TXT2	4.2e-85	62.16	DELLA protein RGL2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BQZ0	4.6e-84	61.49	DELLA protein RGL2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492753 PE=3 ...	[more]
A0A6J1CTR1	1.2e-79	59.60	DELLA protein RGL2-like OS=Momordica charantia OX=3673 GN=LOC111014683 PE=3 SV=1	[more]
A0A6J1GPK2	3.5e-71	55.93	DELLA protein RGL1-like OS=Cucurbita moschata OX=3662 GN=LOC111455972 PE=3 SV=1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000671	Bhi09M000671	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding